Clone Sequence Records
BO12104.5prime Sequence
383 bp (382 high quality bases) assembled on 2006-04-20
> BO12104.5prime
GAAGTTATCAGTCGACATGCCGCCTAAGAAGGACGCGAAGTCTTCGGCCA
AGCAGCCGCAAAAGACACAAAAGAAGAAGGAGGGATCCGGCGGCGGCAAG
GCCAAGAAGAAGAAGTGGTCCAAGGGAAAAGTCAGGGACAAGCTGAACAA
CCAGGTGCTGTTCGACAAGGCCACCTACGAGAAGCTGTACAAGGAAGTGC
CCGCCTACAAGCTGATCACCCCATCGGTGGTCTCCGAGCGTCTGAAGATC
CGCGGCTCCCTGGCCAAGCGTGCTCTCATCGAGCTGCGCGAGAAGGGTCT
GATCAAGCAGGTCGTGCAGCATCATTCCCAGGTCATCTACACACGTGCCA
CCAAGGGTGATGAGGCGGCAAGCTTTCTAGACC
BO12104.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6684-PA | 354 | RpS25-RA | 1..351 | 17..367 | 1755 | 100 | Plus |
| CG6684-PB | 354 | RpS25-RB | 1..351 | 17..367 | 1755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:21:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS25-RB | 515 | CG6684-RB | 27..377 | 17..367 | 1755 | 100 | Plus |
| RpS25-RA | 850 | CG6684-RA | 27..377 | 17..367 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:21:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11215691..11215970 | 298..19 | 1400 | 100 | Minus |
| 3R | 32079331 | 3R | 11215554..11215625 | 367..296 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 09:21:49 has no hits.
BO12104.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:05 Download gff for
BO12104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS25-PB | 1..354 | 17..371 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:57:45 Download gff for
BO12104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6684-PB | 1..354 | 17..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:18:34 Download gff for
BO12104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS25-RA | 22..380 | 8..371 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:48:40 Download gff for
BO12104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS25-RA | 22..380 | 8..371 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:48:40 Download gff for
BO12104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11215550..11215624 | 297..371 | 97 | <- | Minus |
| 3R | 11215693..11215977 | 9..296 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:18:34 Download gff for
BO12104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7041272..7041346 | 297..371 | 97 | <- | Minus |
| arm_3R | 7041415..7041699 | 9..296 | 98 | | Minus |
BO12104.3prime Sequence
383 bp (382 high quality bases) assembled on 2006-04-20
> BO12104.3prime
ATGGTCTAGAAAGCTTGCCGCCTCATCACCCTTGGTGGCACGTGTGTAGA
TGACCTGGGAATGATGCTGCACGACCTGCTTGATCAGACCCTTCTCGCGC
AGCTCGATGAGAGCACGCTTGGCCAGGGAGCCGCGGATCTTCAGACGCTC
GGAGACCACCGATGGGGTGATCAGCTTGTAGGCGGGCACTTCCTTGTACA
GCTTCTCGTAGGTGGCCTTGTCGAACAGCACCTGGTTGTTCAGCTTGTCC
CTGACTTTTCCCTTGGACCACTTCTTCTTCTTGGCCTTGCCGCCGCCGGA
TCCCTCCTTCTTCTTTTGTGTCTTTTGCGGCTGCTTGGCCGAAGACTTCG
CGTCCTTCTTAGGCGGCATGTCGACTGATAACT
BO12104.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6684-PA | 354 | RpS25-RA | 1..351 | 369..19 | 1755 | 100 | Minus |
| CG6684-PB | 354 | RpS25-RB | 1..351 | 369..19 | 1755 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS25-RB | 515 | CG6684-RB | 27..377 | 369..19 | 1755 | 100 | Minus |
| RpS25-RA | 850 | CG6684-RA | 27..377 | 369..19 | 1755 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11215691..11215970 | 88..367 | 1400 | 100 | Plus |
| 3R | 32079331 | 3R | 11215554..11215625 | 19..90 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:50:24 has no hits.
BO12104.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:03 Download gff for
BO12104.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS25-PB | 1..354 | 15..369 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:57:43 Download gff for
BO12104.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6684-PB | 1..354 | 15..369 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:49:37 Download gff for
BO12104.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS25-RA | 22..380 | 15..378 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:05:34 Download gff for
BO12104.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS25-RA | 22..380 | 15..378 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:05:34 Download gff for
BO12104.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11215550..11215624 | 15..89 | 97 | <- | Plus |
| 3R | 11215693..11215977 | 90..377 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:49:37 Download gff for
BO12104.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7041272..7041346 | 15..89 | 97 | <- | Plus |
| arm_3R | 7041415..7041699 | 90..377 | 98 | | Plus |
BO12104.complete Sequence
385 bp assembled on 2006-10-11
GenBank Submission: FJ632309
> BO12104.complete
GAAGTTATCAGTCGACATGCCGCCTAAGAAGGACGCGAAGTCTTCGGCCA
AGCAGCCGCAAAAGACACAAAAGAAGAAGGAGGGATCCGGCGGCGGCAAG
GCCAAGAAGAAGAAGTGGTCCAAGGGAAAAGTCAGGGACAAGCTGAACAA
CCAGGTGCTGTTCGACAAGGCCACCTACGAGAAGCTGTACAAGGAAGTGC
CCGCCTACAAGCTGATCACCCCATCGGTGGTCTCCGAGCGTCTGAAGATC
CGCGGCTCCCTGGCCAAGCGTGCTCTCATCGAGCTGCGCGAGAAGGGTCT
GATCAAGCAGGTCGTGCAGCATCATTCCCAGGTCATCTACACACGTGCCA
CCAAGGGTGATGAGGCGGCAAGCTTTCTAGACCAT
BO12104.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS25-RB | 354 | CG6684-PB | 1..351 | 17..367 | 1755 | 100 | Plus |
| RpS25-RA | 354 | CG6684-PA | 1..351 | 17..367 | 1755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS25-RB | 515 | CG6684-RB | 27..377 | 17..367 | 1755 | 100 | Plus |
| RpS25-RA | 850 | CG6684-RA | 27..377 | 17..367 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11215691..11215970 | 298..19 | 1400 | 100 | Minus |
| 3R | 32079331 | 3R | 11215554..11215625 | 367..296 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:38:46 has no hits.
BO12104.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:44 Download gff for
BO12104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS25-RB | 1..354 | 17..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:25 Download gff for
BO12104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS25-RA | 50..408 | 8..371 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:02 Download gff for
BO12104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS25-RA | 27..377 | 17..369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:44 Download gff for
BO12104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS25-RA | 50..408 | 8..371 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:40 Download gff for
BO12104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS25-RA | 27..377 | 17..369 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:40 Download gff for
BO12104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11215552..11215624 | 297..369 | 97 | <- | Minus |
| 3R | 11215693..11215971 | 17..296 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:02 Download gff for
BO12104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7041274..7041346 | 297..369 | 97 | <- | Minus |
| arm_3R | 7041415..7041693 | 17..296 | 99 | | Minus |
BO12104.pep Sequence
Translation from 16 to 385
> BO12104.pep
MPPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFD
KATYEKLYKEVPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVV
QHHSQVIYTRATKGDEAASFLDH
BO12104.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS25-PB | 117 | CG6684-PB | 1..117 | 1..117 | 591 | 100 | Plus |
| RpS25-PA | 117 | CG6684-PA | 1..117 | 1..117 | 591 | 100 | Plus |
