Clone Sequence Records
BO12106.3prime Sequence
494 bp (493 high quality bases) assembled on 2006-04-20
> BO12106.3prime
ATGGTCTAGAAAGCTTGCGGACCAGAGCTTCAAGTGGGCACGCTTGGCGT
ACGACTTCCAGTCGGAGTGGGCGTAGAACTCCTTGAAAATGGGCGTGACC
AGGGTATCCTCGGGCAGGGTCTTGAAAACGGGCTCACCATACCAGGTGCC
CACCTCCCAGCCGGGCACGTTCTTCATCAGCTCGGCCTCCTCGTCCCGAT
TGCGTCGCAACTGGCGCAGGAATTCGCGATCCCGCTCGGCGACCAAAATG
GGAAAGATGACATTCTGGGCGGAACGCATCTCGATCTCGTCGCGCTTCAC
CTTCTTGGCGGTCAAGTAGTAGATGCCCAGGCCAACGGCTGTCACAACCA
CATAGGTGCCGATGGTGGTGAAGCCTGTGAAGTAGCTCTTCGGTGGCACG
CGGGCAAAGGGTATCTTCTTGTAGCCGCCCGGCGGTGGAAGGTCCTGTTT
CGGGGGACAATGCGGCACTGCCGTCGCCATGTCGACTGATAACT
BO12106.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3446-PA | 465 | CG3446-RA | 1..462 | 480..19 | 2310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:09:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3446-RC | 1265 | CG3446-RC | 120..582 | 481..19 | 2315 | 100 | Minus |
CG3446-RB | 713 | CG3446-RB | 120..582 | 481..19 | 2315 | 100 | Minus |
CG3446-RA | 957 | CG3446-RA | 120..582 | 481..19 | 2315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 01:09:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6349699..6350057 | 19..377 | 1795 | 100 | Plus |
X | 23542271 | X | 6350121..6350228 | 374..481 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 01:09:45 has no hits.
BO12106.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:08 Download gff for
BO12106.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3446-PA | 1..465 | 15..480 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:57:50 Download gff for
BO12106.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3446-PA | 1..465 | 15..480 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 15:10:39 Download gff for
BO12106.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3446-RA | 114..585 | 15..487 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:27:48 Download gff for
BO12106.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3446-RA | 114..585 | 15..487 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:27:48 Download gff for
BO12106.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6349695..6350054 | 15..374 | 99 | <- | Plus |
X | 6350122..6350234 | 375..487 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 15:10:39 Download gff for
BO12106.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6243728..6244087 | 15..374 | 99 | <- | Plus |
arm_X | 6244155..6244267 | 375..487 | 98 | | Plus |
BO12106.5prime Sequence
494 bp (493 high quality bases) assembled on 2006-04-20
> BO12106.5prime
GAAGTTATCAGTCGACATGGCGACGGCAGTGCCGCATTGTCCCCCGAAAC
AGGACCTTCCACCGCCGGGCGGCTACAAGAAGATACCCTTTGCCCGCGTG
CCACCGAAGAGCTACTTCACAGGCTTCACCACCATCGGCACCTATGTGGT
TGTGACAGCCGTTGGCCTGGGCATCTACTACTTGACCGCCAAGAAGGTGA
AGCGCGACGAGATCGAGATGCGTTCCGCCCAGAATGTCATCTTTCCCATT
TTGGTCGCCGAGCGGGATCGCGAATTCCTGCGCCAGTTGCGACGCAATCG
GGACGAGGAGGCCGAGCTGATGAAGAACGTGCCCGGCTGGGAGGTGGGCA
CCTGGTATGGTGAGCCCGTTTTCAAGACCCTGCCCGAGGATACCCTGGTC
ACGCCCATTTTCAAGGAGTTCTACGCCCACTCCGACTGGAAGTCGTACGC
CAAGCGTGCCCACTTGAAGCTCTGGTCCGCAAGCTTTCTAGACC
BO12106.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3446-PA | 465 | CG3446-RA | 1..462 | 17..478 | 2310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:23:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3446-RC | 1265 | CG3446-RC | 120..582 | 16..478 | 2315 | 100 | Plus |
CG3446-RB | 713 | CG3446-RB | 120..582 | 16..478 | 2315 | 100 | Plus |
CG3446-RA | 957 | CG3446-RA | 120..582 | 16..478 | 2315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:23:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6349699..6350057 | 478..120 | 1795 | 100 | Minus |
X | 23542271 | X | 6350121..6350228 | 123..16 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:23:05 has no hits.
BO12106.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:09 Download gff for
BO12106.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3446-PA | 1..465 | 17..482 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:57:52 Download gff for
BO12106.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3446-PA | 1..465 | 17..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 15:53:11 Download gff for
BO12106.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3446-RA | 114..585 | 10..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:59:52 Download gff for
BO12106.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3446-RA | 114..585 | 10..482 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:59:52 Download gff for
BO12106.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6349695..6350054 | 123..482 | 99 | <- | Minus |
X | 6350122..6350234 | 10..122 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:53:11 Download gff for
BO12106.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6243728..6244087 | 123..482 | 99 | <- | Minus |
arm_X | 6244155..6244267 | 10..122 | 98 | | Minus |
BO12106.complete Sequence
496 bp assembled on 2006-10-11
GenBank Submission: FJ632310
> BO12106.complete
GAAGTTATCAGTCGACATGGCGACGGCAGTGCCGCATTGTCCCCCGAAAC
AGGACCTTCCACCGCCGGGCGGCTACAAGAAGATACCCTTTGCCCGCGTG
CCACCGAAGAGCTACTTCACAGGCTTCACCACCATCGGCACCTATGTGGT
TGTGACAGCCGTTGGCCTGGGCATCTACTACTTGACCGCCAAGAAGGTGA
AGCGCGACGAGATCGAGATGCGTTCCGCCCAGAATGTCATCTTTCCCATT
TTGGTCGCCGAGCGGGATCGCGAATTCCTGCGCCAGTTGCGACGCAATCG
GGACGAGGAGGCCGAGCTGATGAAGAACGTGCCCGGCTGGGAGGTGGGCA
CCTGGTATGGTGAGCCCGTTTTCAAGACCCTGCCCGAGGATACCCTGGTC
ACGCCCATTTTCAAGGAGTTCTACGCCCACTCCGACTGGAAGTCGTACGC
CAAGCGTGCCCACTTGAAGCTCTGGTCCGCAAGCTTTCTAGACCAT
BO12106.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:17:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3446-RC | 465 | CG3446-PC | 1..462 | 17..478 | 2310 | 100 | Plus |
CG3446-RB | 465 | CG3446-PB | 1..462 | 17..478 | 2310 | 100 | Plus |
CG3446-RA | 465 | CG3446-PA | 1..462 | 17..478 | 2310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:17:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3446-RC | 1265 | CG3446-RC | 120..582 | 16..478 | 2315 | 100 | Plus |
CG3446-RB | 713 | CG3446-RB | 120..582 | 16..478 | 2315 | 100 | Plus |
CG3446-RA | 957 | CG3446-RA | 120..582 | 16..478 | 2315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:17:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6349699..6350057 | 478..120 | 1795 | 100 | Minus |
X | 23542271 | X | 6350121..6350228 | 123..16 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:17:52 has no hits.
BO12106.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:23 Download gff for
BO12106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3446-RA | 1..465 | 17..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:27 Download gff for
BO12106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3446-RA | 112..583 | 10..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:00 Download gff for
BO12106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3446-RA | 121..582 | 17..480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:23 Download gff for
BO12106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3446-RA | 112..583 | 10..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:20 Download gff for
BO12106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3446-RA | 121..582 | 17..480 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:20 Download gff for
BO12106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6349697..6350054 | 123..480 | 99 | <- | Minus |
X | 6350122..6350227 | 17..122 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:00 Download gff for
BO12106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6243730..6244087 | 123..480 | 99 | <- | Minus |
arm_X | 6244155..6244260 | 17..122 | 100 | | Minus |
BO12106.pep Sequence
Translation from 16 to 496
> BO12106.pep
MATAVPHCPPKQDLPPPGGYKKIPFARVPPKSYFTGFTTIGTYVVVTAVG
LGIYYLTAKKVKRDEIEMRSAQNVIFPILVAERDREFLRQLRRNRDEEAE
LMKNVPGWEVGTWYGEPVFKTLPEDTLVTPIFKEFYAHSDWKSYAKRAHL
KLWSASFLDH
BO12106.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3446-PC | 154 | CG3446-PC | 1..154 | 1..154 | 830 | 100 | Plus |
CG3446-PB | 154 | CG3446-PB | 1..154 | 1..154 | 830 | 100 | Plus |
CG3446-PA | 154 | CG3446-PA | 1..154 | 1..154 | 830 | 100 | Plus |