Clone BO12106 Report

Search the DGRC for BO12106

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG3446-RA
Protein status:BO12106.pep: validated full length
Sequenced Size:496

Clone Sequence Records

BO12106.3prime Sequence

494 bp (493 high quality bases) assembled on 2006-04-20

> BO12106.3prime
ATGGTCTAGAAAGCTTGCGGACCAGAGCTTCAAGTGGGCACGCTTGGCGT
ACGACTTCCAGTCGGAGTGGGCGTAGAACTCCTTGAAAATGGGCGTGACC
AGGGTATCCTCGGGCAGGGTCTTGAAAACGGGCTCACCATACCAGGTGCC
CACCTCCCAGCCGGGCACGTTCTTCATCAGCTCGGCCTCCTCGTCCCGAT
TGCGTCGCAACTGGCGCAGGAATTCGCGATCCCGCTCGGCGACCAAAATG
GGAAAGATGACATTCTGGGCGGAACGCATCTCGATCTCGTCGCGCTTCAC
CTTCTTGGCGGTCAAGTAGTAGATGCCCAGGCCAACGGCTGTCACAACCA
CATAGGTGCCGATGGTGGTGAAGCCTGTGAAGTAGCTCTTCGGTGGCACG
CGGGCAAAGGGTATCTTCTTGTAGCCGCCCGGCGGTGGAAGGTCCTGTTT
CGGGGGACAATGCGGCACTGCCGTCGCCATGTCGACTGATAACT

BO12106.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3446-PA 465 CG3446-RA 1..462 480..19 2310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3446-RC 1265 CG3446-RC 120..582 481..19 2315 100 Minus
CG3446-RB 713 CG3446-RB 120..582 481..19 2315 100 Minus
CG3446-RA 957 CG3446-RA 120..582 481..19 2315 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 01:09:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6349699..6350057 19..377 1795 100 Plus
X 23542271 X 6350121..6350228 374..481 540 100 Plus
Blast to na_te.dros performed on 2015-02-11 01:09:45 has no hits.

BO12106.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:08 Download gff for BO12106.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3446-PA 1..465 15..480 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:57:50 Download gff for BO12106.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3446-PA 1..465 15..480 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 15:10:39 Download gff for BO12106.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3446-RA 114..585 15..487 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:27:48 Download gff for BO12106.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3446-RA 114..585 15..487 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:27:48 Download gff for BO12106.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6349695..6350054 15..374 99 <- Plus
X 6350122..6350234 375..487 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 15:10:39 Download gff for BO12106.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6243728..6244087 15..374 99 <- Plus
arm_X 6244155..6244267 375..487 98   Plus

BO12106.5prime Sequence

494 bp (493 high quality bases) assembled on 2006-04-20

> BO12106.5prime
GAAGTTATCAGTCGACATGGCGACGGCAGTGCCGCATTGTCCCCCGAAAC
AGGACCTTCCACCGCCGGGCGGCTACAAGAAGATACCCTTTGCCCGCGTG
CCACCGAAGAGCTACTTCACAGGCTTCACCACCATCGGCACCTATGTGGT
TGTGACAGCCGTTGGCCTGGGCATCTACTACTTGACCGCCAAGAAGGTGA
AGCGCGACGAGATCGAGATGCGTTCCGCCCAGAATGTCATCTTTCCCATT
TTGGTCGCCGAGCGGGATCGCGAATTCCTGCGCCAGTTGCGACGCAATCG
GGACGAGGAGGCCGAGCTGATGAAGAACGTGCCCGGCTGGGAGGTGGGCA
CCTGGTATGGTGAGCCCGTTTTCAAGACCCTGCCCGAGGATACCCTGGTC
ACGCCCATTTTCAAGGAGTTCTACGCCCACTCCGACTGGAAGTCGTACGC
CAAGCGTGCCCACTTGAAGCTCTGGTCCGCAAGCTTTCTAGACC

BO12106.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3446-PA 465 CG3446-RA 1..462 17..478 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG3446-RC 1265 CG3446-RC 120..582 16..478 2315 100 Plus
CG3446-RB 713 CG3446-RB 120..582 16..478 2315 100 Plus
CG3446-RA 957 CG3446-RA 120..582 16..478 2315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6349699..6350057 478..120 1795 100 Minus
X 23542271 X 6350121..6350228 123..16 540 100 Minus
Blast to na_te.dros performed on 2015-02-13 09:23:05 has no hits.

BO12106.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:09 Download gff for BO12106.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3446-PA 1..465 17..482 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:57:52 Download gff for BO12106.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3446-PA 1..465 17..482 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 15:53:11 Download gff for BO12106.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3446-RA 114..585 10..482 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:59:52 Download gff for BO12106.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3446-RA 114..585 10..482 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:59:52 Download gff for BO12106.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6349695..6350054 123..482 99 <- Minus
X 6350122..6350234 10..122 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:53:11 Download gff for BO12106.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6243728..6244087 123..482 99 <- Minus
arm_X 6244155..6244267 10..122 98   Minus

BO12106.complete Sequence

496 bp assembled on 2006-10-11

GenBank Submission: FJ632310

> BO12106.complete
GAAGTTATCAGTCGACATGGCGACGGCAGTGCCGCATTGTCCCCCGAAAC
AGGACCTTCCACCGCCGGGCGGCTACAAGAAGATACCCTTTGCCCGCGTG
CCACCGAAGAGCTACTTCACAGGCTTCACCACCATCGGCACCTATGTGGT
TGTGACAGCCGTTGGCCTGGGCATCTACTACTTGACCGCCAAGAAGGTGA
AGCGCGACGAGATCGAGATGCGTTCCGCCCAGAATGTCATCTTTCCCATT
TTGGTCGCCGAGCGGGATCGCGAATTCCTGCGCCAGTTGCGACGCAATCG
GGACGAGGAGGCCGAGCTGATGAAGAACGTGCCCGGCTGGGAGGTGGGCA
CCTGGTATGGTGAGCCCGTTTTCAAGACCCTGCCCGAGGATACCCTGGTC
ACGCCCATTTTCAAGGAGTTCTACGCCCACTCCGACTGGAAGTCGTACGC
CAAGCGTGCCCACTTGAAGCTCTGGTCCGCAAGCTTTCTAGACCAT

BO12106.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG3446-RC 465 CG3446-PC 1..462 17..478 2310 100 Plus
CG3446-RB 465 CG3446-PB 1..462 17..478 2310 100 Plus
CG3446-RA 465 CG3446-PA 1..462 17..478 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:17:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3446-RC 1265 CG3446-RC 120..582 16..478 2315 100 Plus
CG3446-RB 713 CG3446-RB 120..582 16..478 2315 100 Plus
CG3446-RA 957 CG3446-RA 120..582 16..478 2315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6349699..6350057 478..120 1795 100 Minus
X 23542271 X 6350121..6350228 123..16 540 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:17:52 has no hits.

BO12106.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:23 Download gff for BO12106.complete
Subject Subject Range Query Range Percent Splice Strand
CG3446-RA 1..465 17..482 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:27 Download gff for BO12106.complete
Subject Subject Range Query Range Percent Splice Strand
CG3446-RA 112..583 10..482 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:00 Download gff for BO12106.complete
Subject Subject Range Query Range Percent Splice Strand
CG3446-RA 121..582 17..480 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:23 Download gff for BO12106.complete
Subject Subject Range Query Range Percent Splice Strand
CG3446-RA 112..583 10..482 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:20 Download gff for BO12106.complete
Subject Subject Range Query Range Percent Splice Strand
CG3446-RA 121..582 17..480 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:20 Download gff for BO12106.complete
Subject Subject Range Query Range Percent Splice Strand
X 6349697..6350054 123..480 99 <- Minus
X 6350122..6350227 17..122 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:00 Download gff for BO12106.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6243730..6244087 123..480 99 <- Minus
arm_X 6244155..6244260 17..122 100   Minus

BO12106.pep Sequence

Translation from 16 to 496

> BO12106.pep
MATAVPHCPPKQDLPPPGGYKKIPFARVPPKSYFTGFTTIGTYVVVTAVG
LGIYYLTAKKVKRDEIEMRSAQNVIFPILVAERDREFLRQLRRNRDEEAE
LMKNVPGWEVGTWYGEPVFKTLPEDTLVTPIFKEFYAHSDWKSYAKRAHL
KLWSASFLDH

BO12106.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3446-PC 154 CG3446-PC 1..154 1..154 830 100 Plus
CG3446-PB 154 CG3446-PB 1..154 1..154 830 100 Plus
CG3446-PA 154 CG3446-PA 1..154 1..154 830 100 Plus