Clone Sequence Records
BO12108.3prime Sequence
922 bp (841 high quality bases) assembled on 2006-04-20
> BO12108.3prime
ATGGTCTAGAAAGCTTGCAACGTTGGTGGGCGTGGTTTCTGCGGCGCCCA
CTGTACACGGCGTGTTGGCAAGCAGGTCAGCGGTTCGGCAGCCAATTATT
TGGAACTTGACCTCGTTCGCGGGCAAGTCGCCGCCAACAAAGAGTTTCGG
CTGGCTGCTCAAGGCCCACAGCTCCTCCTCTCCCTTGGAATTCCTGTTGA
TCTTGAGGCCCGTGACGAACTTGATCTTGTGCGGATTGTAGGCCACCACA
CGCAGGTCATCCGCCGTGTAGTTGGACACGGACTCCTCCCATTTCACCAG
CGCCCCTAAACTGATGAGGCTGCAGTAGAGATTCCCCGACTGATCCATCA
CCTCCGATTCGCACTGGATTCCTCGGGTGCCCAGGCTGTGGAAGCTATCC
CTGCTGGCATTCGCAGACTTCCAGAAGGTCTCGTTGTTGATCAGGGAGAG
CGGAACCCTCATCTCATTAAAGGAGTTCAGCGTGTGAAAGTACAGAAAGC
GGTCTTCCACTTCGCTGGGACTGAGGCTCACTGTAAATATTCCCGCCTGC
GAGTTGCTGGAGCGTCCTAATCTCAGCAAGGGCGACGGCTTCATGGACTC
ATGCTCTATGCGCCAGGATCGTCCCGTCAGGGAGTCAAACACGATTAGAC
CATAACCCCAGGCATCGGCTATATACGCTCTGCCGCCAACACATCGGTTG
GGTGTGCCCCTCTCGGCCAGATCCACCACCAAAGCCGTGAAGATGGATAC
GCTGGGAATGTAGGAATCGGGCGGAAGTGCGTGTCGTTGGACTAGTTCGT
CCTTCACCAAATCAAATGTGAGAATTTGTGGCGGGCACAACTGCAGGGAG
TTTACCTGCCCTGAATCACCACCCAGAGTCGCCAGCACTCGTCGATATAA
GTCCTAATGGCTGAGGTGATGC
BO12108.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17045-PA | 1230 | yellow-e3-RA | 379..1227 | 867..19 | 4245 | 100 | Minus |
CG17045-PA | 1230 | yellow-e3-RA | 323..378 | 922..867 | 280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:46:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-e3-RA | 1319 | CG17045-RA | 387..1291 | 922..19 | 4500 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:46:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13403451..13403937 | 19..505 | 2435 | 100 | Plus |
3R | 32079331 | 3R | 13404001..13404394 | 504..896 | 1920 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:46:38 has no hits.
BO12108.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:12 Download gff for
BO12108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17045-PA | 323..1230 | 15..922 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:57:57 Download gff for
BO12108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17045-PA | 323..1230 | 15..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:34:11 Download gff for
BO12108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-e3-RA | 387..1296 | 11..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:49:05 Download gff for
BO12108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-e3-RA | 387..1296 | 11..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:49:05 Download gff for
BO12108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13403446..13403935 | 11..503 | 99 | <- | Plus |
3R | 13404001..13404394 | 504..896 | 99 | <- | Plus |
3R | 13404459..13404484 | 897..922 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:34:11 Download gff for
BO12108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9229168..9229657 | 11..503 | 99 | <- | Plus |
arm_3R | 9229723..9230116 | 504..896 | 99 | <- | Plus |
arm_3R | 9230181..9230206 | 897..922 | 100 | | Plus |
BO12108.5prime Sequence
820 bp (803 high quality bases) assembled on 2006-04-20
> BO12108.5prime
GAAGTTATCAGTCGACATGTTGGTCGTCCTGCTCGCATTATTTTGTGCAG
TCCAGGGCCAGGCATTGGTCCTCAAGGAGCTGCACACCCTGCATCAGTGG
ACGAACCTCAGTTTGGGCGACGATCTGTCCAAGGGCAATCGCTTTCTGCC
GGTGGATGTGGACATTGAGTACGGCGATGAGGGCAGGCATCGCACCTTTC
TCACGATTCCGCGACTGGGGATGGCCACACCCTTCACACTGGCCACCGTC
ATTGCGGAGCACAATGAGCTGGTGGAGAATCCCAGACTGGAACCGTATCC
CAACGAGGAGTGGCACGTGCCACCCAACAATTGCTCCGGCATCACCTCAG
CCATTAGGACTTATATCGACGAGTGCTGGCGACTCTGGGTGGTGGATTCA
GGGCAGGTAAACTCCCTGCAGTTGTGCCCGCCACAAATTCTCACATTTGA
TTTGGTGAAGGACGAACTAGTCCAACGACACGCACTTCCGCCCGATTCCT
ACATTCCCAGCGTATCCATCTTCACGGCTTTGGTGGTGGATCTGGCCGAG
AGGGGCACACCCAACCGATGTGTTGGCGGCAGAGCGTATATAGCCGATGC
CTGGGGTTATGGTCTAATCGTGTTTGACTCCCTGACGGGACGATCCTGGC
GCATAGAGCATGAGTCCATGAAGCCGTCGCCCTTGCTGAGATTAGGACGC
TCCAGCAACTCGCAGGCGGGAATATTTACAGTGAGCCTCAGTCCCAGCGA
AGTGGAAGACCGCTTTCTGTACTTTCACACGCTGAACTCCTTTAATGAGA
TGAGGGGTCCGCTCTCCCTG
BO12108.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17045-PA | 1230 | yellow-e3-RA | 1..804 | 17..820 | 3995 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:20:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-e3-RA | 1319 | CG17045-RA | 64..868 | 16..820 | 4010 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:20:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13404001..13404394 | 758..365 | 1970 | 100 | Minus |
3R | 32079331 | 3R | 13404459..13404807 | 364..16 | 1745 | 100 | Minus |
3R | 32079331 | 3R | 13403874..13403937 | 820..757 | 305 | 98.4 | Minus |
Blast to na_te.dros performed on 2015-02-09 09:20:15 has no hits.
BO12108.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:13 Download gff for
BO12108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17045-PA | 1..804 | 17..820 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:57:58 Download gff for
BO12108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17045-PA | 1..804 | 17..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:18:14 Download gff for
BO12108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-e3-RA | 59..868 | 7..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:48:25 Download gff for
BO12108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-e3-RA | 59..868 | 7..820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:48:25 Download gff for
BO12108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13403874..13403935 | 759..820 | 98 | <- | Minus |
3R | 13404001..13404394 | 365..758 | 100 | <- | Minus |
3R | 13404459..13404812 | 7..364 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:18:14 Download gff for
BO12108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9229596..9229657 | 759..820 | 98 | <- | Minus |
arm_3R | 9229723..9230116 | 365..758 | 100 | <- | Minus |
arm_3R | 9230181..9230534 | 7..364 | 98 | | Minus |
BO12108.complete Sequence
1261 bp assembled on 2006-10-11
GenBank Submission: FJ632311
> BO12108.complete
GAAGTTATCAGTCGACATGTTGGTCGTCCTGCTCGCATTATTTTGTGCAG
TCCAGGGCCAGGCATTGGTCCTCAAGGAGCTGCACACCCTGCATCAGTGG
ACGAACCTCAGTTTGGGCGACGATCTGTCCAAGGGCAATCGCTTTCTGCC
GGTGGATGTGGACATTGAGTACGGCGATGAGGGCAGGCATCGCACCTTTC
TCACGATTCCGCGACTGGGGATGGCCACACCCTTCACACTGGCCACCGTC
ATTGCGGAGCACAATGAGCTGGTGGAGAATCCCAGACTGGAACCGTATCC
CAACGAGGAGTGGCACGTGCCACCCAACAATTGCTCCGGCATCACCTCAG
CCATTAGGACTTATATCGACGAGTGCTGGCGACTCTGGGTGGTGGATTCA
GGGCAGGTAAACTCCCTGCAGTTGTGCCCGCCACAAATTCTCACATTTGA
TTTGGTGAAGGACGAACTAGTCCAACGACACGCACTTCCGCCCGATTCCT
ACATTCCCAGCGTATCCATCTTCACGGCTTTGGTGGTGGATCTGGCCGAG
AGGGGCACACCCAACCGATGTGTTGGCGGCAGAGCGTATATAGCCGATGC
CTGGGGTTATGGTCTAATCGTGTTTGACTCCCTGACGGGACGATCCTGGC
GCATAGAGCATGAGTCCATGAAGCCGTCGCCCTTGCTGAGATTAGGACGC
TCCAGCAACTCGCAGGCGGGAATATTTACAGTGAGCCTCAGTCCCAGCGA
AGTGGAAGACCGCTTTCTGTACTTTCACACGCTGAACTCCTTTAATGAGA
TGAGGGTTCCGCTCTCCCTGATCAACAACGAGACCTTCTGGAAGTCTGCG
AATGCCAGCAGGGATAGCTTCCACAGCCTGGGCACCCGAGGAATCCAGTG
CGAATCGGAGGTGATGGATCAGTCGGGGAATCTCTACTGCAGCCTCATCA
GTTTAGGGGCGCTGGTGAAATGGGAGGAGTCCGTGTCCAACTACACGGCG
GATGACCTGCGTGTGGTGGCCTACAATCCGCACAAGATCAAGTTCGTCAC
GGGCCTCAAGATCAACAGGAATTCCAAGGGAGAGGAGGAGCTGTGGGCCT
TGAGCAGCCAGCCGAAACTCTTTGTTGGCGGCGACTTGCCCGCGAACGAG
GTCAAGTTCCAAATAATTGGCTGCCGAACCGCTGACCTGCTTGCCAACAC
GCCGTGTACAGTGGGCGCCGCAGAAACCACGCCCACCAACGTTGCAAGCT
TTCTAGACCAT
BO12108.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:01:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-e3-RA | 1230 | CG17045-PA | 1..1227 | 17..1243 | 6135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-e3-RA | 1319 | CG17045-RA | 64..1291 | 16..1243 | 6140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13403451..13403937 | 1243..757 | 2435 | 100 | Minus |
3R | 32079331 | 3R | 13404001..13404394 | 758..365 | 1970 | 100 | Minus |
3R | 32079331 | 3R | 13404459..13404807 | 364..16 | 1745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:01:34 has no hits.
BO12108.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:36 Download gff for
BO12108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-e3-RA | 1..1230 | 17..1247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:24 Download gff for
BO12108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-e3-RA | 57..1294 | 7..1251 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:57 Download gff for
BO12108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-e3-RA | 70..1291 | 22..1245 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:37 Download gff for
BO12108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-e3-RA | 57..1294 | 7..1251 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:38 Download gff for
BO12108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-e3-RA | 70..1291 | 22..1245 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:38 Download gff for
BO12108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13404459..13404801 | 22..364 | 100 | | Minus |
3R | 13403449..13403935 | 759..1245 | 99 | <- | Minus |
3R | 13404001..13404394 | 365..758 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:57 Download gff for
BO12108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9229171..9229657 | 759..1245 | 99 | <- | Minus |
arm_3R | 9229723..9230116 | 365..758 | 100 | <- | Minus |
arm_3R | 9230181..9230523 | 22..364 | 100 | | Minus |
BO12108.pep Sequence
Translation from 16 to 1261
> BO12108.pep
MLVVLLALFCAVQGQALVLKELHTLHQWTNLSLGDDLSKGNRFLPVDVDI
EYGDEGRHRTFLTIPRLGMATPFTLATVIAEHNELVENPRLEPYPNEEWH
VPPNNCSGITSAIRTYIDECWRLWVVDSGQVNSLQLCPPQILTFDLVKDE
LVQRHALPPDSYIPSVSIFTALVVDLAERGTPNRCVGGRAYIADAWGYGL
IVFDSLTGRSWRIEHESMKPSPLLRLGRSSNSQAGIFTVSLSPSEVEDRF
LYFHTLNSFNEMRVPLSLINNETFWKSANASRDSFHSLGTRGIQCESEVM
DQSGNLYCSLISLGALVKWEESVSNYTADDLRVVAYNPHKIKFVTGLKIN
RNSKGEEELWALSSQPKLFVGGDLPANEVKFQIIGCRTADLLANTPCTVG
AAETTPTNVASFLDH
BO12108.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-e3-PA | 409 | CG17045-PA | 1..409 | 1..409 | 2156 | 100 | Plus |
yellow-d2-PA | 412 | CG9891-PA | 44..411 | 32..397 | 581 | 35.1 | Plus |
yellow-d-PA | 432 | CG9889-PA | 31..413 | 19..391 | 555 | 35.8 | Plus |
yellow-e2-PB | 435 | CG17044-PB | 46..434 | 27..397 | 552 | 32.1 | Plus |
yellow-h-PA | 463 | CG1629-PA | 79..440 | 34..397 | 430 | 30 | Plus |