Clone BO12108 Report

Search the DGRC for BO12108

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:8
Vector:pDNR-Dual
Associated Gene/Transcriptyellow-e3-RA
Protein status:BO12108.pep: validated full length
Sequenced Size:1261

Clone Sequence Records

BO12108.3prime Sequence

922 bp (841 high quality bases) assembled on 2006-04-20

> BO12108.3prime
ATGGTCTAGAAAGCTTGCAACGTTGGTGGGCGTGGTTTCTGCGGCGCCCA
CTGTACACGGCGTGTTGGCAAGCAGGTCAGCGGTTCGGCAGCCAATTATT
TGGAACTTGACCTCGTTCGCGGGCAAGTCGCCGCCAACAAAGAGTTTCGG
CTGGCTGCTCAAGGCCCACAGCTCCTCCTCTCCCTTGGAATTCCTGTTGA
TCTTGAGGCCCGTGACGAACTTGATCTTGTGCGGATTGTAGGCCACCACA
CGCAGGTCATCCGCCGTGTAGTTGGACACGGACTCCTCCCATTTCACCAG
CGCCCCTAAACTGATGAGGCTGCAGTAGAGATTCCCCGACTGATCCATCA
CCTCCGATTCGCACTGGATTCCTCGGGTGCCCAGGCTGTGGAAGCTATCC
CTGCTGGCATTCGCAGACTTCCAGAAGGTCTCGTTGTTGATCAGGGAGAG
CGGAACCCTCATCTCATTAAAGGAGTTCAGCGTGTGAAAGTACAGAAAGC
GGTCTTCCACTTCGCTGGGACTGAGGCTCACTGTAAATATTCCCGCCTGC
GAGTTGCTGGAGCGTCCTAATCTCAGCAAGGGCGACGGCTTCATGGACTC
ATGCTCTATGCGCCAGGATCGTCCCGTCAGGGAGTCAAACACGATTAGAC
CATAACCCCAGGCATCGGCTATATACGCTCTGCCGCCAACACATCGGTTG
GGTGTGCCCCTCTCGGCCAGATCCACCACCAAAGCCGTGAAGATGGATAC
GCTGGGAATGTAGGAATCGGGCGGAAGTGCGTGTCGTTGGACTAGTTCGT
CCTTCACCAAATCAAATGTGAGAATTTGTGGCGGGCACAACTGCAGGGAG
TTTACCTGCCCTGAATCACCACCCAGAGTCGCCAGCACTCGTCGATATAA
GTCCTAATGGCTGAGGTGATGC

BO12108.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG17045-PA 1230 yellow-e3-RA 379..1227 867..19 4245 100 Minus
CG17045-PA 1230 yellow-e3-RA 323..378 922..867 280 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-e3-RA 1319 CG17045-RA 387..1291 922..19 4500 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13403451..13403937 19..505 2435 100 Plus
3R 32079331 3R 13404001..13404394 504..896 1920 99.7 Plus
Blast to na_te.dros performed on 2015-02-03 07:46:38 has no hits.

BO12108.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:12 Download gff for BO12108.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17045-PA 323..1230 15..922 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:57:57 Download gff for BO12108.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17045-PA 323..1230 15..922 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:34:11 Download gff for BO12108.3prime
Subject Subject Range Query Range Percent Splice Strand
yellow-e3-RA 387..1296 11..922 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:49:05 Download gff for BO12108.3prime
Subject Subject Range Query Range Percent Splice Strand
yellow-e3-RA 387..1296 11..922 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:49:05 Download gff for BO12108.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13403446..13403935 11..503 99 <- Plus
3R 13404001..13404394 504..896 99 <- Plus
3R 13404459..13404484 897..922 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:34:11 Download gff for BO12108.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9229168..9229657 11..503 99 <- Plus
arm_3R 9229723..9230116 504..896 99 <- Plus
arm_3R 9230181..9230206 897..922 100   Plus

BO12108.5prime Sequence

820 bp (803 high quality bases) assembled on 2006-04-20

> BO12108.5prime
GAAGTTATCAGTCGACATGTTGGTCGTCCTGCTCGCATTATTTTGTGCAG
TCCAGGGCCAGGCATTGGTCCTCAAGGAGCTGCACACCCTGCATCAGTGG
ACGAACCTCAGTTTGGGCGACGATCTGTCCAAGGGCAATCGCTTTCTGCC
GGTGGATGTGGACATTGAGTACGGCGATGAGGGCAGGCATCGCACCTTTC
TCACGATTCCGCGACTGGGGATGGCCACACCCTTCACACTGGCCACCGTC
ATTGCGGAGCACAATGAGCTGGTGGAGAATCCCAGACTGGAACCGTATCC
CAACGAGGAGTGGCACGTGCCACCCAACAATTGCTCCGGCATCACCTCAG
CCATTAGGACTTATATCGACGAGTGCTGGCGACTCTGGGTGGTGGATTCA
GGGCAGGTAAACTCCCTGCAGTTGTGCCCGCCACAAATTCTCACATTTGA
TTTGGTGAAGGACGAACTAGTCCAACGACACGCACTTCCGCCCGATTCCT
ACATTCCCAGCGTATCCATCTTCACGGCTTTGGTGGTGGATCTGGCCGAG
AGGGGCACACCCAACCGATGTGTTGGCGGCAGAGCGTATATAGCCGATGC
CTGGGGTTATGGTCTAATCGTGTTTGACTCCCTGACGGGACGATCCTGGC
GCATAGAGCATGAGTCCATGAAGCCGTCGCCCTTGCTGAGATTAGGACGC
TCCAGCAACTCGCAGGCGGGAATATTTACAGTGAGCCTCAGTCCCAGCGA
AGTGGAAGACCGCTTTCTGTACTTTCACACGCTGAACTCCTTTAATGAGA
TGAGGGGTCCGCTCTCCCTG

BO12108.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG17045-PA 1230 yellow-e3-RA 1..804 17..820 3995 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:20:19
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-e3-RA 1319 CG17045-RA 64..868 16..820 4010 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:20:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13404001..13404394 758..365 1970 100 Minus
3R 32079331 3R 13404459..13404807 364..16 1745 100 Minus
3R 32079331 3R 13403874..13403937 820..757 305 98.4 Minus
Blast to na_te.dros performed on 2015-02-09 09:20:15 has no hits.

BO12108.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:13 Download gff for BO12108.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17045-PA 1..804 17..820 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:57:58 Download gff for BO12108.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17045-PA 1..804 17..820 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:18:14 Download gff for BO12108.5prime
Subject Subject Range Query Range Percent Splice Strand
yellow-e3-RA 59..868 7..820 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:48:25 Download gff for BO12108.5prime
Subject Subject Range Query Range Percent Splice Strand
yellow-e3-RA 59..868 7..820 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:48:25 Download gff for BO12108.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13403874..13403935 759..820 98 <- Minus
3R 13404001..13404394 365..758 100 <- Minus
3R 13404459..13404812 7..364 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:18:14 Download gff for BO12108.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9229596..9229657 759..820 98 <- Minus
arm_3R 9229723..9230116 365..758 100 <- Minus
arm_3R 9230181..9230534 7..364 98   Minus

BO12108.complete Sequence

1261 bp assembled on 2006-10-11

GenBank Submission: FJ632311

> BO12108.complete
GAAGTTATCAGTCGACATGTTGGTCGTCCTGCTCGCATTATTTTGTGCAG
TCCAGGGCCAGGCATTGGTCCTCAAGGAGCTGCACACCCTGCATCAGTGG
ACGAACCTCAGTTTGGGCGACGATCTGTCCAAGGGCAATCGCTTTCTGCC
GGTGGATGTGGACATTGAGTACGGCGATGAGGGCAGGCATCGCACCTTTC
TCACGATTCCGCGACTGGGGATGGCCACACCCTTCACACTGGCCACCGTC
ATTGCGGAGCACAATGAGCTGGTGGAGAATCCCAGACTGGAACCGTATCC
CAACGAGGAGTGGCACGTGCCACCCAACAATTGCTCCGGCATCACCTCAG
CCATTAGGACTTATATCGACGAGTGCTGGCGACTCTGGGTGGTGGATTCA
GGGCAGGTAAACTCCCTGCAGTTGTGCCCGCCACAAATTCTCACATTTGA
TTTGGTGAAGGACGAACTAGTCCAACGACACGCACTTCCGCCCGATTCCT
ACATTCCCAGCGTATCCATCTTCACGGCTTTGGTGGTGGATCTGGCCGAG
AGGGGCACACCCAACCGATGTGTTGGCGGCAGAGCGTATATAGCCGATGC
CTGGGGTTATGGTCTAATCGTGTTTGACTCCCTGACGGGACGATCCTGGC
GCATAGAGCATGAGTCCATGAAGCCGTCGCCCTTGCTGAGATTAGGACGC
TCCAGCAACTCGCAGGCGGGAATATTTACAGTGAGCCTCAGTCCCAGCGA
AGTGGAAGACCGCTTTCTGTACTTTCACACGCTGAACTCCTTTAATGAGA
TGAGGGTTCCGCTCTCCCTGATCAACAACGAGACCTTCTGGAAGTCTGCG
AATGCCAGCAGGGATAGCTTCCACAGCCTGGGCACCCGAGGAATCCAGTG
CGAATCGGAGGTGATGGATCAGTCGGGGAATCTCTACTGCAGCCTCATCA
GTTTAGGGGCGCTGGTGAAATGGGAGGAGTCCGTGTCCAACTACACGGCG
GATGACCTGCGTGTGGTGGCCTACAATCCGCACAAGATCAAGTTCGTCAC
GGGCCTCAAGATCAACAGGAATTCCAAGGGAGAGGAGGAGCTGTGGGCCT
TGAGCAGCCAGCCGAAACTCTTTGTTGGCGGCGACTTGCCCGCGAACGAG
GTCAAGTTCCAAATAATTGGCTGCCGAACCGCTGACCTGCTTGCCAACAC
GCCGTGTACAGTGGGCGCCGCAGAAACCACGCCCACCAACGTTGCAAGCT
TTCTAGACCAT

BO12108.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-e3-RA 1230 CG17045-PA 1..1227 17..1243 6135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-e3-RA 1319 CG17045-RA 64..1291 16..1243 6140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13403451..13403937 1243..757 2435 100 Minus
3R 32079331 3R 13404001..13404394 758..365 1970 100 Minus
3R 32079331 3R 13404459..13404807 364..16 1745 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:01:34 has no hits.

BO12108.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:36 Download gff for BO12108.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-e3-RA 1..1230 17..1247 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:24 Download gff for BO12108.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-e3-RA 57..1294 7..1251 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:57 Download gff for BO12108.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-e3-RA 70..1291 22..1245 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:37 Download gff for BO12108.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-e3-RA 57..1294 7..1251 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:38 Download gff for BO12108.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-e3-RA 70..1291 22..1245 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:38 Download gff for BO12108.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13404459..13404801 22..364 100   Minus
3R 13403449..13403935 759..1245 99 <- Minus
3R 13404001..13404394 365..758 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:57 Download gff for BO12108.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9229171..9229657 759..1245 99 <- Minus
arm_3R 9229723..9230116 365..758 100 <- Minus
arm_3R 9230181..9230523 22..364 100   Minus

BO12108.pep Sequence

Translation from 16 to 1261

> BO12108.pep
MLVVLLALFCAVQGQALVLKELHTLHQWTNLSLGDDLSKGNRFLPVDVDI
EYGDEGRHRTFLTIPRLGMATPFTLATVIAEHNELVENPRLEPYPNEEWH
VPPNNCSGITSAIRTYIDECWRLWVVDSGQVNSLQLCPPQILTFDLVKDE
LVQRHALPPDSYIPSVSIFTALVVDLAERGTPNRCVGGRAYIADAWGYGL
IVFDSLTGRSWRIEHESMKPSPLLRLGRSSNSQAGIFTVSLSPSEVEDRF
LYFHTLNSFNEMRVPLSLINNETFWKSANASRDSFHSLGTRGIQCESEVM
DQSGNLYCSLISLGALVKWEESVSNYTADDLRVVAYNPHKIKFVTGLKIN
RNSKGEEELWALSSQPKLFVGGDLPANEVKFQIIGCRTADLLANTPCTVG
AAETTPTNVASFLDH

BO12108.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-e3-PA 409 CG17045-PA 1..409 1..409 2156 100 Plus
yellow-d2-PA 412 CG9891-PA 44..411 32..397 581 35.1 Plus
yellow-d-PA 432 CG9889-PA 31..413 19..391 555 35.8 Plus
yellow-e2-PB 435 CG17044-PB 46..434 27..397 552 32.1 Plus
yellow-h-PA 463 CG1629-PA 79..440 34..397 430 30 Plus