Clone Sequence Records
BO12109.3prime Sequence
362 bp (361 high quality bases) assembled on 2006-04-20
> BO12109.3prime
ATGGTCTAGAAAGCTTGCGAAGCCGTGCACCTTCAGCTGATCCGGCTTAG
CTAGACCCACCTTCGTCAACCATTGACAGATGTTCTCACGCTGATCGCCC
TGGAGCTGCAGAACCTCACCATACTCTGGGTGCTCGATTACAGTGCCATT
GCATGCGAATTCCTTCTTGCAGGAGCGGACTATCTTCTTCAAGTCATACT
CCGCGGACAGGCCCTGGACAGTGGTTAGCGTCTTGCGACCGTTCCTCTGC
TGGATTCTTATATGCACTAGCCCGTCTTGAATATCATCATCATTGCCCTT
GATTGCATCAGCAAAGGGGTCACGAGTGTTTAAATTCTGGATGGACATGT
CGACTGATAACT
BO12109.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17737-PA | 333 | CG17737-RA | 1..330 | 348..19 | 1650 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:03:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17737-RA | 681 | CG17737-RA | 159..488 | 348..19 | 1650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:03:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3223769..3223928 | 321..162 | 800 | 100 | Minus |
3L | 28110227 | 3L | 3224312..3224457 | 164..19 | 730 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:03:42 has no hits.
BO12109.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:14 Download gff for
BO12109.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17737-PA | 1..333 | 15..348 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:00 Download gff for
BO12109.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17737-PA | 1..333 | 15..348 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:45:56 Download gff for
BO12109.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17737-RA | 149..497 | 9..360 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:05:00 Download gff for
BO12109.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17737-RA | 149..497 | 9..360 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:05:00 Download gff for
BO12109.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3223770..3223927 | 163..320 | 100 | -> | Minus |
3L | 3224314..3224466 | 9..162 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:45:56 Download gff for
BO12109.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3223770..3223927 | 163..320 | 100 | -> | Minus |
arm_3L | 3224314..3224466 | 9..162 | 97 | | Minus |
BO12109.5prime Sequence
362 bp (361 high quality bases) assembled on 2006-04-20
> BO12109.5prime
GAAGTTATCAGTCGACATGTCCATCCAGAATTTAAACACTCGTGACCCCT
TTGCTGATGCAATCAAGGGCAATGATGATGATATTCAAGACGGGCTAGTG
CATATAAGAATCCAGCAGAGGAACGGTCGCAAGACGCTAACCACTGTCCA
GGGCCTGTCCGCGGAGTATGACTTGAAGAAGATAGTCCGCTCCTGCAAGA
AGGAATTCGCATGCAATGGCACTGTAATCGAGCACCCAGAGTATGGTGAG
GTTCTGCAGCTCCAGGGCGATCAGCGTGAGAACATCTGTCAATGGTTGAC
GAAGGTGGGTCTAGCTAAGCCGGATCAGCTGAAGGTGCACGGCTTCGCAA
GCTTTCTAGACC
BO12109.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17737-PA | 333 | CG17737-RA | 1..330 | 17..346 | 1650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:33:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17737-RA | 681 | CG17737-RA | 159..488 | 17..346 | 1650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:33:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3223769..3223928 | 44..203 | 800 | 100 | Plus |
3L | 28110227 | 3L | 3224312..3224457 | 201..346 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:33:09 has no hits.
BO12109.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:15 Download gff for
BO12109.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17737-PA | 1..333 | 17..350 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:02 Download gff for
BO12109.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17737-PA | 1..333 | 17..350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:12:50 Download gff for
BO12109.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17737-RA | 149..497 | 5..356 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:43:13 Download gff for
BO12109.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17737-RA | 149..497 | 5..356 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:43:13 Download gff for
BO12109.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3223770..3223927 | 45..202 | 100 | -> | Plus |
3L | 3224314..3224466 | 203..356 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:12:50 Download gff for
BO12109.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3223770..3223927 | 45..202 | 100 | -> | Plus |
arm_3L | 3224314..3224466 | 203..356 | 97 | | Plus |
BO12109.complete Sequence
364 bp assembled on 2006-10-11
GenBank Submission: FJ632312
> BO12109.complete
GAAGTTATCAGTCGACATGTCCATCCAGAATTTAAACACTCGTGACCCCT
TTGCTGATGCAATCAAGGGCAATGATGATGATATTCAAGACGGGCTAGTG
CATATAAGAATCCAGCAGAGGAACGGTCGCAAGACGCTAACCACTGTCCA
GGGCCTGTCCGCGGAGTATGACTTGAAGAAGATAGTCCGCTCCTGCAAGA
AGGAATTCGCATGCAATGGCACTGTAATCGAGCACCCAGAGTATGGTGAG
GTTCTGCAGCTCCAGGGCGATCAGCGTGAGAACATCTGTCAATGGTTGAC
GAAGGTGGGTCTAGCTAAGCCGGATCAGCTGAAGGTGCACGGCTTCGCAA
GCTTTCTAGACCAT
BO12109.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:54:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17737-RA | 333 | CG17737-PA | 1..330 | 17..346 | 1650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17737-RA | 681 | CG17737-RA | 159..488 | 17..346 | 1650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3223769..3223928 | 44..203 | 800 | 100 | Plus |
3L | 28110227 | 3L | 3224312..3224457 | 201..346 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:54:05 has no hits.
BO12109.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:35:41 Download gff for
BO12109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17737-RA | 1..333 | 17..350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:51 Download gff for
BO12109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17737-RA | 140..488 | 5..356 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:37 Download gff for
BO12109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17737-RA | 159..488 | 17..348 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:35:41 Download gff for
BO12109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17737-RA | 140..488 | 5..356 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:56 Download gff for
BO12109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17737-RA | 159..488 | 17..348 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:56 Download gff for
BO12109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3224314..3224457 | 203..348 | 98 | | Plus |
3L | 3223499..3223526 | 17..44 | 100 | -> | Plus |
3L | 3223770..3223927 | 45..202 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:37 Download gff for
BO12109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3223499..3223526 | 17..44 | 100 | -> | Plus |
arm_3L | 3223770..3223927 | 45..202 | 100 | -> | Plus |
arm_3L | 3224314..3224457 | 203..348 | 98 | | Plus |
BO12109.pep Sequence
Translation from 16 to 364
> BO12109.pep
MSIQNLNTRDPFADAIKGNDDDIQDGLVHIRIQQRNGRKTLTTVQGLSAE
YDLKKIVRSCKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKVGLA
KPDQLKVHGFASFLDH
BO12109.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17737-PA | 110 | CG17737-PA | 1..110 | 1..110 | 581 | 100 | Plus |