Clone BO12109 Report

Search the DGRC for BO12109

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG17737-RA
Protein status:BO12109.pep: validated full length
Sequenced Size:364

Clone Sequence Records

BO12109.3prime Sequence

362 bp (361 high quality bases) assembled on 2006-04-20

> BO12109.3prime
ATGGTCTAGAAAGCTTGCGAAGCCGTGCACCTTCAGCTGATCCGGCTTAG
CTAGACCCACCTTCGTCAACCATTGACAGATGTTCTCACGCTGATCGCCC
TGGAGCTGCAGAACCTCACCATACTCTGGGTGCTCGATTACAGTGCCATT
GCATGCGAATTCCTTCTTGCAGGAGCGGACTATCTTCTTCAAGTCATACT
CCGCGGACAGGCCCTGGACAGTGGTTAGCGTCTTGCGACCGTTCCTCTGC
TGGATTCTTATATGCACTAGCCCGTCTTGAATATCATCATCATTGCCCTT
GATTGCATCAGCAAAGGGGTCACGAGTGTTTAAATTCTGGATGGACATGT
CGACTGATAACT

BO12109.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17737-PA 333 CG17737-RA 1..330 348..19 1650 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG17737-RA 681 CG17737-RA 159..488 348..19 1650 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:03:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3223769..3223928 321..162 800 100 Minus
3L 28110227 3L 3224312..3224457 164..19 730 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:03:42 has no hits.

BO12109.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:14 Download gff for BO12109.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17737-PA 1..333 15..348 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:00 Download gff for BO12109.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17737-PA 1..333 15..348 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:45:56 Download gff for BO12109.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17737-RA 149..497 9..360 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:05:00 Download gff for BO12109.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17737-RA 149..497 9..360 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:05:00 Download gff for BO12109.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3223770..3223927 163..320 100 -> Minus
3L 3224314..3224466 9..162 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:45:56 Download gff for BO12109.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3223770..3223927 163..320 100 -> Minus
arm_3L 3224314..3224466 9..162 97   Minus

BO12109.5prime Sequence

362 bp (361 high quality bases) assembled on 2006-04-20

> BO12109.5prime
GAAGTTATCAGTCGACATGTCCATCCAGAATTTAAACACTCGTGACCCCT
TTGCTGATGCAATCAAGGGCAATGATGATGATATTCAAGACGGGCTAGTG
CATATAAGAATCCAGCAGAGGAACGGTCGCAAGACGCTAACCACTGTCCA
GGGCCTGTCCGCGGAGTATGACTTGAAGAAGATAGTCCGCTCCTGCAAGA
AGGAATTCGCATGCAATGGCACTGTAATCGAGCACCCAGAGTATGGTGAG
GTTCTGCAGCTCCAGGGCGATCAGCGTGAGAACATCTGTCAATGGTTGAC
GAAGGTGGGTCTAGCTAAGCCGGATCAGCTGAAGGTGCACGGCTTCGCAA
GCTTTCTAGACC

BO12109.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17737-PA 333 CG17737-RA 1..330 17..346 1650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17737-RA 681 CG17737-RA 159..488 17..346 1650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3223769..3223928 44..203 800 100 Plus
3L 28110227 3L 3224312..3224457 201..346 730 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:33:09 has no hits.

BO12109.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:15 Download gff for BO12109.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17737-PA 1..333 17..350 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:02 Download gff for BO12109.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17737-PA 1..333 17..350 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:12:50 Download gff for BO12109.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17737-RA 149..497 5..356 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:43:13 Download gff for BO12109.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17737-RA 149..497 5..356 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:43:13 Download gff for BO12109.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3223770..3223927 45..202 100 -> Plus
3L 3224314..3224466 203..356 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:12:50 Download gff for BO12109.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3223770..3223927 45..202 100 -> Plus
arm_3L 3224314..3224466 203..356 97   Plus

BO12109.complete Sequence

364 bp assembled on 2006-10-11

GenBank Submission: FJ632312

> BO12109.complete
GAAGTTATCAGTCGACATGTCCATCCAGAATTTAAACACTCGTGACCCCT
TTGCTGATGCAATCAAGGGCAATGATGATGATATTCAAGACGGGCTAGTG
CATATAAGAATCCAGCAGAGGAACGGTCGCAAGACGCTAACCACTGTCCA
GGGCCTGTCCGCGGAGTATGACTTGAAGAAGATAGTCCGCTCCTGCAAGA
AGGAATTCGCATGCAATGGCACTGTAATCGAGCACCCAGAGTATGGTGAG
GTTCTGCAGCTCCAGGGCGATCAGCGTGAGAACATCTGTCAATGGTTGAC
GAAGGTGGGTCTAGCTAAGCCGGATCAGCTGAAGGTGCACGGCTTCGCAA
GCTTTCTAGACCAT

BO12109.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG17737-RA 333 CG17737-PA 1..330 17..346 1650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17737-RA 681 CG17737-RA 159..488 17..346 1650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3223769..3223928 44..203 800 100 Plus
3L 28110227 3L 3224312..3224457 201..346 730 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:54:05 has no hits.

BO12109.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:35:41 Download gff for BO12109.complete
Subject Subject Range Query Range Percent Splice Strand
CG17737-RA 1..333 17..350 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:51 Download gff for BO12109.complete
Subject Subject Range Query Range Percent Splice Strand
CG17737-RA 140..488 5..356 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:37 Download gff for BO12109.complete
Subject Subject Range Query Range Percent Splice Strand
CG17737-RA 159..488 17..348 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:35:41 Download gff for BO12109.complete
Subject Subject Range Query Range Percent Splice Strand
CG17737-RA 140..488 5..356 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:56 Download gff for BO12109.complete
Subject Subject Range Query Range Percent Splice Strand
CG17737-RA 159..488 17..348 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:56 Download gff for BO12109.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3224314..3224457 203..348 98   Plus
3L 3223499..3223526 17..44 100 -> Plus
3L 3223770..3223927 45..202 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:37 Download gff for BO12109.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3223499..3223526 17..44 100 -> Plus
arm_3L 3223770..3223927 45..202 100 -> Plus
arm_3L 3224314..3224457 203..348 98   Plus

BO12109.pep Sequence

Translation from 16 to 364

> BO12109.pep
MSIQNLNTRDPFADAIKGNDDDIQDGLVHIRIQQRNGRKTLTTVQGLSAE
YDLKKIVRSCKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKVGLA
KPDQLKVHGFASFLDH

BO12109.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG17737-PA 110 CG17737-PA 1..110 1..110 581 100 Plus