Clone Sequence Records
BO12110.complete Sequence
1945 bp assembled on 2010-04-13
GenBank Submission: KX796901
> BO12110.complete
GAAGTTATCAGTCGACATGTTGGCACAAACGCAAATTATCCCAACGCCTT
GGCGACTTTTGACCCTGGCTTTATTCTGCTCAGCTTTATTTTTGGCCAGT
GAGGCTCAAAATGCCATCCCAAAAACGAATCCTGCCTCGCTGCTGATACA
GAAGACATCCTTCTCCTGCGCCGGACGTCCAGCCGGATATTATGCGGATG
TGGAGACGGGCTGCCAGGTGTACCACATGTGCGATGGCCTGGGTCGCCAG
TTCAGCTACACCTGCCCAAACACGACACTTTTCCAGCAGCGAATGCTTAT
CTGCGACCACTGGTACATGGTGAACTGCTCCAAGGCGGAGAGCAACTATG
CTGCCAATCTCCTAATTGGTCAGCGGGACAAGCCCTTCGTAAACGACGAG
GAAAACAGCTTGCGCACTCCAAGACCCGATCTTCTGGATCGTCCTTATGC
GCCCGACTATTCCGGCGAGTCCTTCAGAAGCCAATATAAGCAGTTTACTT
CCAACCAGAATCAGATACGTGATGAGTCCGTCAAAGGAGCCGGTGCGGGT
AAATCGGATCCCCAGATATCGCAGACGCGTTGGCGCATTCCACCACCCAG
CCGGACGATCCTTCCACCGGCCTATGAACCGCAAATCGAGCTGCCCAGTG
CCCAATCGGCCAAGCCCAGGATACCCATTATCACTAGCACCACCACAACC
ACTCGAGCGACCACCACCACCCGACCAACAACCACAACTCGTGCCACCAC
CACAACAACAACCACTCGAAGACCTCCGGTAACCGCCAGGCCGAAGGAGG
CCTTGCACAACAGGCGGCCAAATTTCCAGGAGCATGATATGGATGACTTG
GGCACCAGCCACAGCACACGGTACAACACCTCGGCAGACTTCAACTCGGC
GGAGTCGCCGCTCCGTGAAACGAAACAGTCCAGCACCAAGCTGACCAAGT
TCATCAAGCCGCCGTCCAAGATCTATGAGCCACCCTTTGTGTACCCCATC
TACAATCTAGAAGAGTCCCAGACCCAGAACGCGGCAGTCGCCACCACACT
GCGCACATCAACGGCGGCTCCTTTCAGTCCTGTTCCAAGTCGCAAGGAGG
TCAGCACCACAACTCCACGACCACTGAGTCGACCGACGACCTTGGCCGGT
GTACCCTTCTCCTCTGCCACACACCCAACTACGGTTACGACGGTCGGAGT
ACCGCCACGCAGCGATAATCGGACTCCAGCTCCGGCCCAGAGCTTCCGCC
TGGCCACGCCCACCAGCACTGCAGCACCACCATCGCGCCCGGCACAGTTG
CCCTTCAACGATTTACTGCCGCCGTTCGTTGACTTTGTGCCCCACGATAT
AGCCACCACCCAAGGACCGCCTATCTATTACGAATGGAAGGTGCCCTCGA
ACGGTCTTGAGCCTCCCAAATTAGACCCACCCATTGGTGTGGATGGACGT
GAGTATCCCGAGACCACTGGAGACTACGGGGTCACCAGCAAGCAGGATGT
ATTCAACACCCGACTAAACGATATTGGAAGCCATCAAAAGAAGCCAGTCC
AGATAACCTCGCCGCTCCAACAGTCGAGCACAAGCCATCGTTTGGCCATC
TCGAGATCCATTAAGCCCAAAGAGGAGCAGGAATCGGCACAGCGGCGATC
CGATGTGGTGGCCAGCTCCACGGATATAAGCCATCTGCGCAAGCAATTCC
TCATTCCGGAGTACGCCTTCCCGCTGGAAACCATTGGGCGCACGGGTTAT
GGTCCTGGTGCAGGAGCAGCGGCTGGGGGCTCCGGCTCCAGCAACGGCGA
TCTGTATAACTCGTTCCAGCTGAAGATCCCCGAGCAGCGCGCTAAGTGGT
TCGGAGAGAACCCCAAGTGCCCGGAGTGCCATCCTTCGTTCGTTCTGCCG
GGCACCTGCGAGCCCTGCCTGCGCAGAGCAAGCTTTCTAGACCAT
BO12110.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:24:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14880-RA | 1914 | CG14880-PA | 1..1911 | 17..1927 | 9555 | 100 | Plus |
| CG14880-RB | 1914 | CG14880-PB | 1..1911 | 17..1927 | 9555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:24:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14880-RA | 2591 | CG14880-RA | 505..2421 | 11..1927 | 9570 | 99.9 | Plus |
| CG14880-RB | 2599 | CG14880-RB | 513..2429 | 11..1927 | 9570 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:24:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16360499..16361937 | 1927..489 | 7195 | 100 | Minus |
| 3R | 32079331 | 3R | 16362179..16362447 | 370..102 | 1345 | 100 | Minus |
| 3R | 32079331 | 3R | 16362002..16362124 | 490..368 | 615 | 100 | Minus |
| 3R | 32079331 | 3R | 16365516..16365609 | 104..11 | 455 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:24:39 has no hits.
BO12110.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:40 Download gff for
BO12110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14880-RA | 514..2419 | 22..1929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:27 Download gff for
BO12110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14880-RB | 524..2429 | 22..1929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:01 Download gff for
BO12110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14880-RB | 524..2429 | 22..1929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:01 Download gff for
BO12110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16360497..16361935 | 491..1929 | 99 | <- | Minus |
| 3R | 16362002..16362123 | 369..490 | 100 | <- | Minus |
| 3R | 16362181..16362445 | 104..368 | 100 | <- | Minus |
| 3R | 16365517..16365598 | 22..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:27 Download gff for
BO12110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12186219..12187657 | 491..1929 | 99 | <- | Minus |
| arm_3R | 12187724..12187845 | 369..490 | 100 | <- | Minus |
| arm_3R | 12187903..12188167 | 104..368 | 100 | <- | Minus |
| arm_3R | 12191239..12191320 | 22..103 | 100 | | Minus |
BO12110.3prime Sequence
824 bp (822 high quality bases) assembled on 2006-04-20
> BO12110.3prime
ATGGTCTAGAAAGCTTGCTCTGCGCAGGCAGGGCTCGCAGGTGCCCGGCA
GAACGAACGAAGGATGGCACTCCGGGCACTTGGGGTTCTCTCCGAACCAC
TTAGCGCGCTGCTCGGGGATCTTCAGCTGGAACGAGTTATACAGATCGCC
GTTGCTGGAGCCGGAGCCCCCAGCCGCTGCTCCTGCACCAGGACCATAAC
CCGTGCGCCCAATGGTTTCCAGCGGGAAGGCGTACTCCGGAATGAGGAAT
TGCTTGCGCAGATGGCTTATATCCGTGGAGCTGGCCACCACATCGGATCG
CCGCTGTGCCGATTCCTGCTCCTCTTTGGGCTTAATGGATCTCGAGATGG
CCAAACGATGGCTTGTGCTCGACTGTTGGAGCGGCGAGGTTATCTGGACT
GGCTTCTTTTGATGGCTTCCAATATCGTTTAGTCGGGTGTTGAATACATC
CTGCTTGCTGGTGACCCCGTAGTCTCCAGTGGTCTCGGGATACTCACGTC
CATCCACACCAATGGGTGGGTCTAATTTGGGAGGCTCAAGACCGTTCGAG
GGCACCTTCCATTCGTAATAGATAGGCGGTCCTTGGGTGGTGGCTATATC
GTGGGGCACAAAGTCAACGAACGGCGGCAGTAAATCGTTGAAGGGCAACT
GTGCCGGGCGCGATGGTGGTGCTGCAGTGCTGGTGGGCGTGGCCAGGCGG
AAGCTCTGGGCCGGAGCTGGAGTCCGATTATCGCTGCGTGGCGGTACTCC
GACCGTCGTAACCGTAGTTGGGTGTGTGGCAGAGGAGAAGGGTACACCGG
CCAAGGTCGTCGGTCGACTCAGTG
BO12110.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14880-PB | 1914 | CG14880-RB | 1106..1911 | 824..19 | 4030 | 100 | Minus |
| CG14880-PA | 1914 | CG14880-RA | 1106..1911 | 824..19 | 4030 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:53:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14880-RA | 2591 | CG14880-RA | 1616..2421 | 824..19 | 4030 | 100 | Minus |
| CG14880-RB | 2599 | CG14880-RB | 1624..2429 | 824..19 | 4030 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:53:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16360499..16361304 | 19..824 | 4030 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:53:48 has no hits.
BO12110.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:16 Download gff for
BO12110.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14880-PB | 1106..1914 | 18..824 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:03 Download gff for
BO12110.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14880-PA | 1106..1914 | 18..824 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:35:13 Download gff for
BO12110.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14880-RB | 1624..2429 | 19..824 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:50:06 Download gff for
BO12110.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14880-RB | 1624..2429 | 19..824 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:50:06 Download gff for
BO12110.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16360499..16361304 | 19..824 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:35:13 Download gff for
BO12110.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12186221..12187026 | 19..824 | 100 | | Plus |
BO12110.5prime Sequence
817 bp (791 high quality bases) assembled on 2006-04-20
> BO12110.5prime
GAAGTTATCAGTCGACATGTTGGCACAAACGCAAATTATCCCAACGCCTT
GGCGACTTTTGACCCTGGCTTTATTCTGCTCAGCTTTATTTTTGGCCAGT
GAGGCTCAAAATGCCATCCCAAAAACGAATCCTGCCTCGCTGCTGATACA
GAAGACATCCTTCTCCTGCGCCGGACGTCCAGCCGGATATTATGCGGATG
TGGAGACGGGCTGCCAGGTGTACCACATGTGCGATGGCCTGGGTCGCCAG
TTCAGCTACACCTGCCCAAACACGACACTTTTCCAGCAGCGAATGCTTAT
CTGCGACCACTGGTACATGGTGAACTGCTCCAAGGCGGAGAGCAACTATG
CTGCCAATCTCCTAATTGGTCAGCGGGACAAGCCCTTCGTAAACGACGAG
GAAAACAGCTTGCGCACTCCAAGACCCGATCTTCTGGATCGTCCTTATGC
GCCCGACTATTCCGGCGAGTCCTTCAGAAGCCAATATAAGCAGTTTACTT
CCAACCAGAATCAGATACGTGATGAGTCCGTCAAAGGAGCCGGTGCGGGT
AAATCGGATCCCCAGATATCGCAGACGCGTTGGCGCATTCCACCACCCAG
CCGGACGATCCTTCCACCGGCCTATGAACCGCAAATCGAGCTGCCCAGTG
CCCAATCGGCCAAGCCCAGGATACCCATTATCACTAGCACCACCACAACC
ACTCGAGCGACCACCACCACCCGACCAACAACCACAACTCGTGCCACCAC
CACAACAACAACCACTCGAAGACCTCCGGTAACCGCCAGGCCGAAGGAGG
CCTTGCACAACAGGCGG
BO12110.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14880-PB | 1914 | CG14880-RB | 1..801 | 17..817 | 4005 | 100 | Plus |
| CG14880-PA | 1914 | CG14880-RA | 1..801 | 17..817 | 4005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:55:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14880-RA | 2591 | CG14880-RA | 505..1311 | 11..817 | 4020 | 99.9 | Plus |
| CG14880-RB | 2599 | CG14880-RB | 513..1319 | 11..817 | 4020 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:55:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16361609..16361937 | 817..489 | 1645 | 100 | Minus |
| 3R | 32079331 | 3R | 16362179..16362447 | 370..102 | 1345 | 100 | Minus |
| 3R | 32079331 | 3R | 16362002..16362124 | 490..368 | 615 | 100 | Minus |
| 3R | 32079331 | 3R | 16365516..16365609 | 104..11 | 455 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:55:30 has no hits.
BO12110.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:17 Download gff for
BO12110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14880-PB | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:05 Download gff for
BO12110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14880-PA | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:03:49 Download gff for
BO12110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14880-RB | 505..1319 | 1..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:22:56 Download gff for
BO12110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14880-RB | 505..1319 | 1..817 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:22:56 Download gff for
BO12110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16361609..16361935 | 491..817 | 100 | <- | Minus |
| 3R | 16362002..16362123 | 369..490 | 100 | <- | Minus |
| 3R | 16362181..16362445 | 104..368 | 100 | <- | Minus |
| 3R | 16365517..16365617 | 1..103 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:03:49 Download gff for
BO12110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12187331..12187657 | 491..817 | 100 | <- | Minus |
| arm_3R | 12187724..12187845 | 369..490 | 100 | <- | Minus |
| arm_3R | 12187903..12188167 | 104..368 | 100 | <- | Minus |
| arm_3R | 12191239..12191339 | 1..103 | 95 | | Minus |
BO12110.pep Sequence
Translation from 16 to 1945
> BO12110.pep
MLAQTQIIPTPWRLLTLALFCSALFLASEAQNAIPKTNPASLLIQKTSFS
CAGRPAGYYADVETGCQVYHMCDGLGRQFSYTCPNTTLFQQRMLICDHWY
MVNCSKAESNYAANLLIGQRDKPFVNDEENSLRTPRPDLLDRPYAPDYSG
ESFRSQYKQFTSNQNQIRDESVKGAGAGKSDPQISQTRWRIPPPSRTILP
PAYEPQIELPSAQSAKPRIPIITSTTTTTRATTTTRPTTTTRATTTTTTT
RRPPVTARPKEALHNRRPNFQEHDMDDLGTSHSTRYNTSADFNSAESPLR
ETKQSSTKLTKFIKPPSKIYEPPFVYPIYNLEESQTQNAAVATTLRTSTA
APFSPVPSRKEVSTTTPRPLSRPTTLAGVPFSSATHPTTVTTVGVPPRSD
NRTPAPAQSFRLATPTSTAAPPSRPAQLPFNDLLPPFVDFVPHDIATTQG
PPIYYEWKVPSNGLEPPKLDPPIGVDGREYPETTGDYGVTSKQDVFNTRL
NDIGSHQKKPVQITSPLQQSSTSHRLAISRSIKPKEEQESAQRRSDVVAS
STDISHLRKQFLIPEYAFPLETIGRTGYGPGAGAAAGGSGSSNGDLYNSF
QLKIPEQRAKWFGENPKCPECHPSFVLPGTCEPCLRRASFLDH
BO12110.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:14:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14880-PA | 637 | CG14880-PA | 1..637 | 1..637 | 3381 | 100 | Plus |
| CG14880-PB | 637 | CG14880-PB | 1..637 | 1..637 | 3381 | 100 | Plus |
| CG13643-PC | 807 | CG13643-PC | 51..427 | 46..419 | 215 | 27.5 | Plus |
| CG13643-PB | 807 | CG13643-PB | 51..427 | 46..419 | 215 | 27.5 | Plus |
| CG13675-PC | 151 | CG13675-PC | 69..135 | 48..114 | 199 | 50.7 | Plus |
