Clone Sequence Records
BO12112.3prime Sequence
896 bp (848 high quality bases) assembled on 2006-04-20
> BO12112.3prime
ATGGTCTAGAAAGCTTGCATCCAACACCTGGCGAATTTGAAAGTCCTCCA
AGTCCTCCTGCGGAATTAGCCGCAGTTTCAAATCGTTGGCCAAATGCAGA
ACCGCATAGAATGCCACCGACGGGGACAGCGAGTCTGACATTTTGGTGGT
CAAAAGGTCGGGCAGCTTCTGATACACCTGCTGAAAACTCGCGAAACCCT
TTGAATAGTGTTCGCCCTTTTTCTTGGGATGCGAGGGTATCGTCTCCTCC
GGCACAGCGTTTAGCAATTGTTTCTGTATTAGAGAGTTGCAGGACTTTTT
CAGATTCTTCATGTCTATAACCTTGGCTCTCTTCGCGAATGGAACAATCA
CTTTGGCAACCTGCGACGGCGCACCCTCGAACTCGGTGCCGATCTCGAAG
ACTGTGTTGTTGCAAGTGGCGTTCATCTGGGTGAGGCCAATCTCACCCGC
GGACACGTTCATCATGCTTGCCTCGGCCGCTTGCTCCGCAGCAATCGCGG
CAATAACGCTCACGTTGGCGGGAACGGCGTCGGTAAAATGCTCGTTGTTG
AATAGCTCCTGGTCATTGTCATCATCGTGGTGCATATCCGCATCCATATC
GATGCCAAGATCTCCACCCTCATCCGAATCAGGTTCACCTGCGCGTTTCG
ACAACTTTATGCTGGGAGCGGATTCGTACTTGAAGAAAAGATCCGGGTCC
AATTCGAACTTGGTGGGCAATATCAGCTTTCGGGGATCCCACTTCTTTTG
GAAATTCGCCTTGCGCTGCCTTATGGTGGTGTCCAGCTGTTGGAAGAAGT
TTTCCGTCACATTGCCATAGTCCAAAGCCTTGGCTCTTCGGTTGGCATTC
AGATGCGCTGACTTCTTCGCTCGTTGAGTGCGAATAGGCTGAGTGT
BO12112.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10726-PA | 2208 | barr-RA | 1328..2205 | 896..19 | 4390 | 100 | Minus |
| CG10726-PB | 2208 | barr-RB | 1328..2205 | 896..19 | 4390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:38:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| barr-RC | 2908 | CG10726-RC | 1806..2683 | 896..19 | 4390 | 100 | Minus |
| barr-RB | 2684 | CG10726-RB | 1582..2459 | 896..19 | 4390 | 100 | Minus |
| barr-RA | 2580 | CG10726-RA | 1478..2355 | 896..19 | 4390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:38:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20058800..20059337 | 359..896 | 2690 | 100 | Plus |
| 2L | 23513712 | 2L | 20058388..20058733 | 19..364 | 1730 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:38:35 has no hits.
BO12112.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:20 Download gff for
BO12112.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barr-PB | 1328..2208 | 16..896 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:10 Download gff for
BO12112.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10726-PB | 1328..2208 | 16..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:07:07 Download gff for
BO12112.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barr-RA | 1478..2364 | 8..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:19:44 Download gff for
BO12112.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barr-RA | 1478..2364 | 8..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:44 Download gff for
BO12112.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20058379..20058729 | 8..360 | 98 | <- | Plus |
| 2L | 20058802..20059337 | 361..896 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:07:07 Download gff for
BO12112.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20058379..20058729 | 8..360 | 98 | <- | Plus |
| arm_2L | 20058802..20059337 | 361..896 | 100 | | Plus |
BO12112.5prime Sequence
936 bp (795 high quality bases) assembled on 2006-04-20
> BO12112.5prime
GAAGTTATCAGTCGACATGACTCTGCCCCGCTTAGAAACTCCGCTCAGGC
GGTCCGCAGTAGGCAGTTACCAGGAGGGGGTGTCCCGCATGCTAACCCCC
TTTAACGACGACGAGGCGGAAAGGCGGGAAGCCCGACGTCGCACGCTCCT
TCAGCAGCATCACCGGTCGAGCACTCTGGAGTCCATCGAGGACAATGAGA
CCATCAAAAATTGCTTGGAGCTCTACAATGGCAACAAGGTGAGCAAGGAC
AACGCCTGGAACCTGATGCTCATCGATTCGTTGGCCAATTTGCTGGATCA
CCATCACAAGCGCATGAGCAACTTCAAGATGGCTGGTTCCTCTTTAGAAG
CCTCTTCCAAGGTTTACGGCCTGCGTGTGGACTCCATCTACTTGGACGCC
ATGCGCATTTCAGCTGGCTTGAGTGCACGAACTCTTACGGATAAGCAAAT
AAATGCTGCCGAGGATGATGATGGCCCCCAAGGTGAACAGGCTACTGGCG
AGGGTCAGGACTCAGCGCAACAGGCAGCAAAAGAAGCAGCACCGAAGCCC
AAACGGCAAAAGAAACCCATATCCACCGTGACCAAAAACAGAGAAACGCT
GAACAGCCGGCTGGATACGGCTCCCTTGCAGGATCCTGTGTTTGGCAAGC
TGAACTCCACTGTGGGCTCTATAAATGCTTCCAATCGTCTGATGCACAAC
ATTCTTCCTAGTTTCGACTCTGAATTGCGCTTGCGTACCACCTACAATTT
TTGGAACAGCGAAGAGTCCACCGAGGAGGTCCAGGACCACACTACACTNC
ATGCAGAAATGGAACAATGGCCAGCCACATCACTTATGAGCACCAATCTT
ATGCGCAAACTGCTGCCACATGCTGAAAGGTCAAATCTGCGACCGCTGCA
TACGGGCTACATCATCACAAGTGCTCCCAATCCCAA
BO12112.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10726-PA | 2208 | barr-RA | 1..920 | 17..936 | 4556 | 99.7 | Plus |
| CG10726-PB | 2208 | barr-RB | 1..920 | 17..936 | 4556 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:28:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| barr-RC | 2908 | CG10726-RC | 479..1398 | 17..936 | 4574 | 99.8 | Plus |
| barr-RB | 2684 | CG10726-RB | 255..1174 | 17..936 | 4574 | 99.8 | Plus |
| barr-RA | 2580 | CG10726-RA | 151..1070 | 17..936 | 4574 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:28:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20059745..20060354 | 936..327 | 3024 | 99.7 | Minus |
| 2L | 23513712 | 2L | 20060408..20060723 | 332..17 | 1565 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-02 11:28:21 has no hits.
BO12112.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:21 Download gff for
BO12112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barr-PB | 1..918 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:12 Download gff for
BO12112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10726-PB | 1..918 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:18:59 Download gff for
BO12112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barr-RA | 151..1068 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:30:53 Download gff for
BO12112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barr-RA | 151..1068 | 17..934 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:30:53 Download gff for
BO12112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20059747..20060352 | 329..934 | 99 | <- | Minus |
| 2L | 20060412..20060726 | 10..328 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:18:59 Download gff for
BO12112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20059747..20060352 | 329..934 | 99 | <- | Minus |
| arm_2L | 20060412..20060726 | 10..328 | 98 | | Minus |
BO12112.complete Sequence
2239 bp assembled on 2008-01-17
GenBank Submission: FJ632313
> BO12112.complete
GAAGTTATCAGTCGACATGACTCTGCCCCGCTTAGAAACTCCGCTCAGGC
GGTCCGCAGTAGGCAGTTACCAGGAGGGGGTGTCCCGCATGCTAACCCCC
TTTAACGACGACGAGGCGGAAAGGCGGGAAGCCCGACGTCGCACGCTCCT
TCAGCAGCATCACCGGTCGAGCACTCTGGAGTCCATCGAGGACAATGAGA
CCATCAAAAATTGCTTGGAGCTCTACAATGGCAACAAGGTGAGCAAGGAC
AACGCCTGGAACCTGATGCTCATCGATTCGTTGGCCAATTTGCTGGATCA
CCATCACAAGCGCATGAGCAACTTCAAGATGGCTGGTTCCTCTTTAGAAG
CCTCTTCCAAGGTTTACGGCCTGCGTGTGGACTCCATCTACTTGGACGCC
ATGCGCATTTCAGCTGGCTTGAGTGCACGAACTCTTACGGATAAGCAAAT
AAATGCTGCCGAGGATGATGATGGCCCCCAAGGTGAACAGGCTACTGGCG
AGGGTCAGGACTCAGCGCAACAGGCAGCAAAAGAAGCAGCACCGAAGCCC
AAACGGCAAAAGAAACCCATATCCACCGTGACCAAAAACAGAGAAACGCT
GAACAGCCGGCTGGATACGGCTCCCTTGCAGGATCCTGTGTTTGGCAAGC
TGAACTCCACTGTGGGCTCTATAAATGCTTCCAATCGTCTGATGCACAAC
ATTCTTCCTAGTTTCGACTCTGAATTGCGCTTGCGTACCACCTACAATTT
TTGGAACAGCGAAGAGTCCACCGAGGAGGTCCAGGACCACACTACACTCA
ATGCAGAAATGGAACAATGGCCAGCCACATCACTTATGAGCACCAATCTT
ATGCGCAAACTGCTGCCACATGCTGAAAGGTCAAATCTGCGACCGCTGCA
TACGGGCTACATCATCACAAGTGCTCCCAATCCCAAGTCGGCAAATGAAA
AGGCCGCCGAGGTAGTGCAGGATGAAGATCATGACGAGGGTCTGGATAAT
GCCGACGATATGTGTGTAAATGAGATTTCCATGGCCTTTGACATCAATGC
CGAGTGTGAGCCCATGCCGGACCTGGATGGACCACCGCCTCTGGTGCTGG
AGGTGGACTCCAATGAGCTGGAAGAGCTCACTGCCGAGGAGCAAATGGTG
ATCAATAATTGCCGTCGGCTACGTAAGCAGACAGAGTTCATCGAGGATTT
GCGACCGGTAGACGGGAATTCCAAGCTAGAGTACTCCTACAGGCCGATGG
ACCAGATCTCCCAGTTTTGGGCCGGCCCCTCGCATTGGAAGTTTAAGCGG
ACTCGCCCGCGCAGCACTTTCTCGCAGACCAATGGACAGGTGGACACTCA
GCCTATTCGCACTCAACGAGCGAAGAAGTCAGCGCATCTGAATGCCAACC
GAAGAGCCAAGGCTTTGGACTATGGCAATGTGACGGAAAACTTCTTCCAA
CAGCTGGACACCACCATAAGGCAGCGCAAGGCGAATTTCCAAAAGAAGTG
GGATCCCCGAAAGCTGATATTGCCCACCAAGTTCGAATTGGACCCGGATC
TTTTCTTCAAGTACGAATCCGCTCCCAGCATAAAGTTGTCGAAACGCGCA
GGTGAACCTGATTCGGATGAGGGTGGAGATCTTGGCATCGATATGGATGC
GGATATGCACCACGATGATGACAATGACCAGGAGCTATTCAACAACGAGC
ATTTTACCGACGCCGTTCCCGCCAACGTGAGCGTTATTGCCGCGATTGCT
GCGGAGCAAGCGGCCGAGGCAAGCATGATGAACGTGTCCGCGGGTGAGAT
TGGCCTCACCCAGATGAACGCCACTTGCAACAACACAGTCTTCGAGATCG
GCACCGAGTTCGAGGGTGCGCCGTCGCAGGTTGCCAAAGTGATTGTTCCA
TTCGCGAAGAGAGCCAAGGTTATAGACATGAAGAATCTGAAAAAGTCCTG
CAACTCTCTAATACAGAAACAATTGCTAAACGCTGTGCCGGAGGAGACGA
TACCCTCGCATCCCAAGAAAAAGGGCGAACACTATTCAAAGGGTTTCGCG
AGTTTTCAGCAGGTGTATCAGAAGCTGCCCGACCTTTTGACCACCAAAAT
GTCAGACTCGCTGTCCCCGTCGGTGGCATTCTATGCGGTTCTGCATTTGG
CCAACGATTTGAAACTGCGGCTAATTCCGCAGGAGGACTTGGAGGACTTT
CAAATTCGCCAGGTGTTGGATGCAAGCTTTCTAGACCAT
BO12112.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:28:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| barr-RC | 2208 | CG10726-PC | 1..2205 | 17..2221 | 11025 | 100 | Plus |
| barr-RB | 2208 | CG10726-PB | 1..2205 | 17..2221 | 11025 | 100 | Plus |
| barr-RA | 2208 | CG10726-PA | 1..2205 | 17..2221 | 11025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| barr-RC | 2908 | CG10726-RC | 479..2683 | 17..2221 | 11025 | 100 | Plus |
| barr-RB | 2684 | CG10726-RB | 255..2459 | 17..2221 | 11025 | 100 | Plus |
| barr-RA | 2580 | CG10726-RA | 151..2355 | 17..2221 | 11025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20058800..20060354 | 1881..327 | 7775 | 100 | Minus |
| 2L | 23513712 | 2L | 20058388..20058733 | 2221..1876 | 1730 | 100 | Minus |
| 2L | 23513712 | 2L | 20060408..20060723 | 332..17 | 1565 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:28:35 has no hits.
BO12112.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:55 Download gff for
BO12112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barr-RB | 1..2208 | 17..2224 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:12 Download gff for
BO12112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barr-RB | 253..2457 | 17..2223 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:09 Download gff for
BO12112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barr-RA | 151..2355 | 17..2223 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:55 Download gff for
BO12112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barr-RB | 250..2466 | 10..2232 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:29 Download gff for
BO12112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barr-RA | 151..2355 | 17..2223 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:29 Download gff for
BO12112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20058385..20058729 | 1880..2223 | 99 | <- | Minus |
| 2L | 20058802..20060352 | 329..1879 | 100 | <- | Minus |
| 2L | 20060412..20060723 | 17..328 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:09 Download gff for
BO12112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20058385..20058729 | 1880..2223 | 99 | <- | Minus |
| arm_2L | 20058802..20060352 | 329..1879 | 100 | <- | Minus |
| arm_2L | 20060412..20060723 | 17..328 | 100 | | Minus |
BO12112.pep Sequence
Translation from 16 to 2239
> BO12112.pep
MTLPRLETPLRRSAVGSYQEGVSRMLTPFNDDEAERREARRRTLLQQHHR
SSTLESIEDNETIKNCLELYNGNKVSKDNAWNLMLIDSLANLLDHHHKRM
SNFKMAGSSLEASSKVYGLRVDSIYLDAMRISAGLSARTLTDKQINAAED
DDGPQGEQATGEGQDSAQQAAKEAAPKPKRQKKPISTVTKNRETLNSRLD
TAPLQDPVFGKLNSTVGSINASNRLMHNILPSFDSELRLRTTYNFWNSEE
STEEVQDHTTLNAEMEQWPATSLMSTNLMRKLLPHAERSNLRPLHTGYII
TSAPNPKSANEKAAEVVQDEDHDEGLDNADDMCVNEISMAFDINAECEPM
PDLDGPPPLVLEVDSNELEELTAEEQMVINNCRRLRKQTEFIEDLRPVDG
NSKLEYSYRPMDQISQFWAGPSHWKFKRTRPRSTFSQTNGQVDTQPIRTQ
RAKKSAHLNANRRAKALDYGNVTENFFQQLDTTIRQRKANFQKKWDPRKL
ILPTKFELDPDLFFKYESAPSIKLSKRAGEPDSDEGGDLGIDMDADMHHD
DDNDQELFNNEHFTDAVPANVSVIAAIAAEQAAEASMMNVSAGEIGLTQM
NATCNNTVFEIGTEFEGAPSQVAKVIVPFAKRAKVIDMKNLKKSCNSLIQ
KQLLNAVPEETIPSHPKKKGEHYSKGFASFQQVYQKLPDLLTTKMSDSLS
PSVAFYAVLHLANDLKLRLIPQEDLEDFQIRQVLDASFLDH
BO12112.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:26:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| barr-PC | 735 | CG10726-PC | 1..735 | 1..735 | 3799 | 100 | Plus |
| barr-PB | 735 | CG10726-PB | 1..735 | 1..735 | 3799 | 100 | Plus |
| barr-PA | 735 | CG10726-PA | 1..735 | 1..735 | 3799 | 100 | Plus |
