Clone Sequence Records
BO12113.3prime Sequence
909 bp (835 high quality bases) assembled on 2006-04-20
> BO12113.3prime
ATGGTCTAGAAAGCTTGCAACGGACAGATTGGTGCATGCACCATTAGATT
TAGGTGCATGTGCCTCCCACCAGTCAATGGCATCGATCATGCTCTCGTCC
GAAAGGCAGCCAGCGGTTGTATTGTTGGGCTGATCTTGCTGCAAAATATC
GCTGAATTCCTTCTTGAATCCGGGAAGGACTACGTTGTCGTAGAAGCTCA
CGGGCTCCTGGTCGTAGAACGCGGGTAAAATAGGCGACGATCCCAGGTTC
TGAACTTGCTGCTGCTGCTGCGGGGAAGTCTGTGCGTTGCTGCTGCTGCT
AATGTTGGTACTGACGTATTCCTGTTTGATTACTTGCTGTTGCAGCGGTG
TGGCACACGTCTGTGTCTGTAACAGCAATTCAGTCGAGGCGACAGGTGAA
ACTGGAGAAGAGCAGGGACTTCTTACCACCTTTTGTGGCACGGGCGATCG
CGATAACTGGCCCGAAGCAGCTGTTTCTTCAAGTTTTTGCTCGTGACTCA
AATCGCCCAATAAGTCAGTCGTCAGCAGTTGGTAGGTGTTGGTTCCTGGT
ATTCTGATGTATTGCAACCCATTTAATGTAGTCAAACTAGGCAGGAGATC
ACTGGCTTGCGGAGGGTTTAGCATATCCTCGGATAAAGTTTGTTGGACAG
TCTGTTGCTCATCCATTTCGTAGTTGCTCAGCGAGTCGTCGAAATGTTCA
TCCAGACAATCGAATTCGTCCTTAATAAACATAAAGCTATCATCGCCGGA
ACCAGAACTATTCCCCTGACTGTTGAGAGGTGGAAAATCAAATCCCAGCA
GTTTTTCCAAACTTCTTATGTACTCTACGGCCATGCGGAGGGTCTCCACT
TTGGATAGCTTTCTGCTTGCTCCTCTACCCGCCCCCTGGGCCTCAAAAGC
CTCAGATAC
BO12113.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3258-PA | 1461 | ase-RA | 568..1458 | 909..19 | 4405 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:32:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ase-RA | 2430 | CG3258-RA | 777..1667 | 909..19 | 4425 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:32:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 461523..462413 | 909..19 | 4425 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-01-31 12:32:44 has no hits.
BO12113.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:22 Download gff for
BO12113.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ase-PA | 538..567 | 834..863 | 74 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:13 Download gff for
BO12113.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3258-PA | 568..1461 | 18..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 00:01:17 Download gff for
BO12113.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ase-RA | 777..1671 | 13..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:05:49 Download gff for
BO12113.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ase-RA | 777..1671 | 13..909 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:05:49 Download gff for
BO12113.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 461523..462417 | 13..909 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 00:01:17 Download gff for
BO12113.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 355556..356450 | 13..909 | 99 | | Minus |
BO12113.5prime Sequence
833 bp (821 high quality bases) assembled on 2006-04-20
> BO12113.5prime
GAAGTTATCAGTCGACATGGCCGCCTTAAGCTTCAGCCCATCACCTCCTC
CAAAAGAAAACCCCAAGGAAAACCCCAATCCAGGAATAAAAACCACGTTG
AAACCTTTTGGAAAGATTACCGTTCACAATGTTTTAAGTGAGAGTGGCGC
CAACGCCTTGCAACAGCATATAGCCAATCAGAACACCATTATTCGAAAGA
TCCGGGACTTTGGCATGCTGGGCGCTGTTCAAAGTGCCGCAGCCAGCACA
ACTAACACCACACCCATATCCAGTCAACGGAAGAGGCCCCTGGGAGAATC
CCAAAAGCAGAACCGGCACAACCAGCAGAATCAACAGCTTAGTAAAACAT
CAGTGCCTGCTAAAAAATGCAAGACCAACAAGAAGTTGGCGGTTGAAAGG
CCCCCAAAAGCAGGAACTATAAGCCACCCTCATAAAAGCCAAAGCGATCA
GAGTTTTGGGACTCCTGGAAGAAAGGGTTTGCCTTTGCCACAAGCCGTTG
CCCGTAGAAACGCTAGGGAAAGAAATCGCGTGAAGCAGGTTAACAATGGA
TTTGCTTTACTCCGGGAGAAGATCCCAGAAGAAGTATCTGAGGCTTTTGA
GGCCCAGGGGGCGGGTAGAGGAGCAAGCAAGAAGCTATCCAAAGTGGAGA
CCCTCCGCATGGCCGTAGAGTACATAAGAAGTTTGGAAAAACTGCTGGGA
TTTGATTTTCCACCTCTCAACAGTCAGGGGAATAGTTCTGGTTCCGGCGA
TGATAGCTTTATGTTTATTAAGGACGAATTCGATTGTCTGGATGAACATT
TCGACGACTCGCTGAGCAACTACGAAATGGATG
BO12113.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3258-PA | 1461 | ase-RA | 1..817 | 17..833 | 4085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:48:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ase-RA | 2430 | CG3258-RA | 210..1026 | 17..833 | 4085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 01:48:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 460956..461772 | 17..833 | 4085 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 01:48:47 has no hits.
BO12113.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:23 Download gff for
BO12113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ase-PA | 545..567 | 634..659 | 76 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:15 Download gff for
BO12113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3258-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:35:13 Download gff for
BO12113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ase-RA | 210..1026 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:03:15 Download gff for
BO12113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ase-RA | 210..1026 | 17..833 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:03:15 Download gff for
BO12113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 460956..461772 | 17..833 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:35:13 Download gff for
BO12113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 354989..355805 | 17..833 | 100 | | Plus |
BO12113.complete Sequence
1492 bp assembled on 2006-11-02
GenBank Submission: FJ632314
> BO12113.complete
GAAGTTATCAGTCGACATGGCCGCCTTAAGCTTCAGCCCATCACCTCCTC
CAAAAGAAAACCCCAAGGAAAACCCCAATCCAGGAATAAAAACCACGTTG
AAACCTTTTGGAAAGATTACCGTTCACAATGTTTTAAGTGAGAGTGGCGC
CAACGCCTTGCAACAGCATATAGCCAATCAGAACACCATTATTCGAAAGA
TCCGGGACTTTGGCATGCTGGGCGCTGTTCAAAGTGCCGCAGCCAGCACA
ACTAACACCACACCCATATCCAGTCAACGGAAGAGGCCCCTGGGAGAATC
CCAAAAGCAGAACCGGCACAACCAGCAGAATCAACAGCTTAGTAAAACAT
CAGTGCCTGCTAAAAAATGCAAGACCAACAAGAAGTTGGCGGTTGAAAGG
CCCCCAAAAGCAGGAACTATAAGCCACCCTCATAAAAGCCAAAGCGATCA
GAGTTTTGGGACTCCTGGAAGAAAGGGTTTGCCTTTGCCACAAGCCGTTG
CCCGTAGAAACGCTAGGGAAAGAAATCGCGTGAAGCAGGTTAACAATGGA
TTTGCTTTACTCCGGGAGAAGATCCCAGAAGAAGTATCTGAGGCTTTTGA
GGCCCAGGGGGCGGGTAGAGGAGCAAGCAAGAAGCTATCCAAAGTGGAGA
CCCTCCGCATGGCCGTAGAGTACATAAGAAGTTTGGAAAAACTGCTGGGA
TTTGATTTTCCACCTCTCAACAGTCAGGGGAATAGTTCTGGTTCCGGCGA
TGATAGCTTTATGTTTATTAAGGACGAATTCGATTGTCTGGATGAACATT
TCGACGACTCGCTGAGCAACTACGAAATGGATGAGCAACAGACTGTCCAA
CAAACTTTATCCGAGGATATGCTAAACCCTCCGCAAGCCAGTGATCTCCT
GCCTAGTTTGACTACATTAAATGGGTTGCAATACATCAGAATACCAGGAA
CCAACACCTACCAACTGCTGACGACTGACTTATTGGGCGATTTGAGTCAC
GAGCAAAAACTTGAAGAAACAGCTGCTTCGGGCCAGTTATCGCGATCGCC
CGTGCCACAAAAGGTGGTAAGAAGTCCCTGCTCTTCTCCAGTTTCACCTG
TCGCCTCGACTGAATTGCTGTTACAGACACAGACGTGTGCCACACCGCTG
CAACAGCAAGTAATCAAACAGGAATACGTCAGTACCAACATTAGCAGCAG
CAGCAACGCACAGACTTCCCCGCAGCAGCAGCAGCAAGTTCAGAACCTGG
GATCGTCGCCTATTTTACCCGCGTTCTACGACCAGGAGCCCGTGAGCTTC
TACGACAACGTAGTCCTTCCCGGATTCAAGAAGGAATTCAGCGATATTTT
GCAGCAAGATCAGCCCAACAATACAACCGCTGGCTGCCTTTCGGACGAGA
GCATGATCGATGCCATTGACTGGTGGGAGGCACATGCACCTAAATCTAAT
GGTGCATGCACCAATCTGTCCGTTGCAAGCTTTCTAGACCAT
BO12113.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:10:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ase-RA | 1461 | CG3258-PA | 1..1458 | 17..1474 | 7290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ase-RA | 2430 | CG3258-RA | 210..1667 | 17..1474 | 7290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 460956..462413 | 17..1474 | 7290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:10:43 has no hits.
BO12113.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:37 Download gff for
BO12113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ase-RA | 1..1461 | 17..1475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:19 Download gff for
BO12113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ase-RA | 457..1918 | 17..1480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:07 Download gff for
BO12113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ase-RA | 210..1667 | 17..1476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:37 Download gff for
BO12113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ase-RA | 457..1918 | 17..1480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:55 Download gff for
BO12113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ase-RA | 210..1667 | 17..1476 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:55 Download gff for
BO12113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 460956..462413 | 17..1476 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:07 Download gff for
BO12113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 354989..356446 | 17..1476 | 99 | | Plus |
BO12113.pep Sequence
Translation from 16 to 1492
> BO12113.pep
MAALSFSPSPPPKENPKENPNPGIKTTLKPFGKITVHNVLSESGANALQQ
HIANQNTIIRKIRDFGMLGAVQSAAASTTNTTPISSQRKRPLGESQKQNR
HNQQNQQLSKTSVPAKKCKTNKKLAVERPPKAGTISHPHKSQSDQSFGTP
GRKGLPLPQAVARRNARERNRVKQVNNGFALLREKIPEEVSEAFEAQGAG
RGASKKLSKVETLRMAVEYIRSLEKLLGFDFPPLNSQGNSSGSGDDSFMF
IKDEFDCLDEHFDDSLSNYEMDEQQTVQQTLSEDMLNPPQASDLLPSLTT
LNGLQYIRIPGTNTYQLLTTDLLGDLSHEQKLEETAASGQLSRSPVPQKV
VRSPCSSPVSPVASTELLLQTQTCATPLQQQVIKQEYVSTNISSSSNAQT
SPQQQQQVQNLGSSPILPAFYDQEPVSFYDNVVLPGFKKEFSDILQQDQP
NNTTAGCLSDESMIDAIDWWEAHAPKSNGACTNLSVASFLDH
BO12113.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:17:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ase-PA | 486 | CG3258-PA | 1..486 | 1..486 | 2499 | 100 | Plus |
| l(1)sc-PA | 257 | CG3839-PA | 25..167 | 96..247 | 222 | 40.1 | Plus |
| sc-PA | 345 | CG3827-PA | 69..198 | 130..268 | 210 | 41.4 | Plus |
| ac-PA | 201 | CG3796-PA | 25..94 | 160..227 | 203 | 64.3 | Plus |
