Clone Sequence Records
BO12114.3prime Sequence
971 bp (850 high quality bases) assembled on 2006-04-20
> BO12114.3prime
ATGGTCTAGAAAGCTTGCGAGGACCGTCTCGTTGGTGTTGGTGCAGGTGC
GGGCGCCATTAACGATCGAGTATTTTGTGGAGCTATCCTTTTTGGCCATC
AGCCGACCGAGGAATATCTCCTTGAAAGTCTCCCGAAACTGGCGCGACAT
GCCGCAGTAAATGCCGAAGTTGATCGGATAGCTGAATACCAGGAAGAAGT
TCGTCAGCATGATGCAAATGTTGGCCAGTCCATAGTCCAGGAACTCGATA
ATCAGGCTACTGACGATGTGCATCGCAGTGACCACAGCAATGGGTATCTC
GGCTAGAAGGAACACCGACACGACCACAATTAGCATCAGCGTGGTGCAAT
TGGTCTCCCTCAGTTTCTTGCACTCCTTCTTCCGGTTCTCCCGGAAGAGG
AGCTTTCGGCGCTCCTGTGCCTGCCGCATCGCCGCGAACAGCAGAATGTT
CAGGGTAACCAGGATAATGCAGGGCAGCAGGTGGACGAACAGCACCCGGA
ACAGATAGTAGCTTGTGTAGTATAGGTCCACTCCAATGTAATCGTGCACC
CACATCGACGTCTCCAAGTGGCACACCTCCGTTGGGCTGCCGTTCCACTC
GATCACCAGCGGCATGTACGTCCTGTCGAAGAATCTGGGCAGTTGGTGCA
GAAACGCCAGCAATGCAATATACGCCGTGCACCGCCTCACACGCGGCATC
GTGCACCACGTTCGGGCCATGGGGGCGTGGCAAACGTAGATGTATCTTTG
AACGGCGAGGGCCAGAGTTAGCCAAACGGAGATGGTGTGGCACATGGCTG
GCATTATCTCATTGAAAATGCTGTAGGCCAGACACATGGAGACCGGATGC
AGGGGCTTATAATGATTGCCGAATGTGTACATATACCAGAGACCGGGTGC
CGGAAATATAACCGTCAGCATATCGCATATAGCCATCCCCATTAGCACAA
AATTGGTGGGCGTGGGCATGC
BO12114.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16752-PA | 1308 | CG16752-RA | 353..1305 | 971..19 | 4715 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:45:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SPR-RB | 3357 | CG16752-RB | 651..1603 | 971..19 | 4735 | 99.8 | Minus |
SPR-RC | 2804 | CG16752-RC | 570..1522 | 971..19 | 4735 | 99.8 | Minus |
SPR-RA | 3093 | CG16752-RA | 859..1811 | 971..19 | 4735 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:45:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5491530..5492258 | 747..19 | 3645 | 100 | Minus |
X | 23542271 | X | 5480835..5480967 | 936..804 | 650 | 99.2 | Minus |
X | 23542271 | X | 5487372..5487435 | 809..746 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:45:29 has no hits.
BO12114.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:23 Download gff for
BO12114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16752-PA | 353..1308 | 18..971 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:17 Download gff for
BO12114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16752-PA | 353..1308 | 18..971 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:29:39 Download gff for
BO12114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPR-RA | 859..1811 | 19..971 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:36:28 Download gff for
BO12114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPR-RA | 859..1811 | 19..971 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:36:28 Download gff for
BO12114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5479123..5479155 | 939..971 | 96 | -> | Minus |
X | 5480833..5480963 | 808..938 | 99 | -> | Minus |
X | 5487374..5487435 | 746..807 | 100 | -> | Minus |
X | 5491532..5492258 | 19..745 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:29:39 Download gff for
BO12114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5374866..5374996 | 808..938 | 99 | -> | Minus |
arm_X | 5381407..5381468 | 746..807 | 100 | -> | Minus |
arm_X | 5373156..5373188 | 939..971 | 96 | -> | Minus |
arm_X | 5385565..5386291 | 19..745 | 100 | | Minus |
BO12114.5prime Sequence
956 bp (879 high quality bases) assembled on 2006-04-20
> BO12114.5prime
GAAGTTATCAGTCGACATGGACAACTATACGGACGTACTGTACCAGTACC
GCTTGGCACCGTCCGCCAGCCCGGAAATGGAAATGGAACTGGCCGATCCG
CGTCAGATGGTCCGCGGATTTCATCTGCCAACCAACGAGTCGCAGTTGGA
GATTCCCGACTATGGCAACGAGAGCCTGGACTATCCCAACTACCAGCAGA
TGGTCGGCGGACCGTGTCGCATGGAGGACAACAATATCAGCTATTGGAAT
CTCACCTGCGATTCGCCACTGGAGTACGCTATGCCGCTCTATGGCTACTG
TATGCCCTTCCTGCTGATCATCACCATTATCTCGAACTCCCTGATTGTGC
TCGTTTTGAGCAAGAAGAGCATGGCCACGCCCACCAATTTTGTGCTAATG
GGAATGGCTATATGCGATATGCTGACGGTTATATTTCCGGCACCCGGTCT
CTGGTATATGTACACATTCGGCAATCATTATAAGCCCCTGCATCCGGTCT
CCATGTGTCTGGCCTACAGCATTTTCAATGAGATAATGCCAGCCATGTGC
CACACCATCTCCGTTTGGCTAACTCTGGCCCTCGCCGTTCAAAGATACAT
CTACGTTTGCCACGCCCCCATGGCCCGAACGTGGTGCACGATGCCGCGTG
TGAGGCGGTGCACGGCGTATATTGCATTGCTGGCGTTTCTGCACCAACTG
CCCAGATTCTTCGACAGGACGTACATGCCGCTGGTGATCGAGTGGAACGG
CAGCCCAACGGAGGTGTGCCACTTGGAGACGTCGATGTGGGTGCACGATT
ACATTGGAGTGGACCTATACTACACAAGCTACTATCTGTTCCGGGTGCTG
TTCGTCCACCTGCTGCCCTGCATTATCCTGGTTACCCTGAACATTCTGCT
GTTCGCGGCGATGCGGCAGGCACAGGAGCGCCGAAAGCTCCTCTTCGGGA
GAACCG
BO12114.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16752-PA | 1308 | CG16752-RA | 1..930 | 17..946 | 4650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:45:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SPR-RB | 3357 | CG16752-RB | 295..1239 | 13..956 | 4685 | 99.8 | Plus |
SPR-RC | 2804 | CG16752-RC | 214..1158 | 13..956 | 4685 | 99.8 | Plus |
SPR-RA | 3093 | CG16752-RA | 503..1447 | 13..956 | 4685 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:45:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5478767..5479156 | 13..402 | 1935 | 99.7 | Plus |
X | 23542271 | X | 5491530..5491894 | 593..956 | 1775 | 99.7 | Plus |
X | 23542271 | X | 5480832..5480967 | 401..536 | 665 | 99.3 | Plus |
X | 23542271 | X | 5487372..5487435 | 531..594 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:45:03 has no hits.
BO12114.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:24 Download gff for
BO12114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16752-PA | 1..941 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:18 Download gff for
BO12114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16752-PA | 1..941 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:20:37 Download gff for
BO12114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPR-RA | 501..1447 | 9..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:52:05 Download gff for
BO12114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPR-RA | 501..1447 | 9..956 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:52:05 Download gff for
BO12114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5478765..5479155 | 9..401 | 99 | -> | Plus |
X | 5480833..5480963 | 402..532 | 100 | -> | Plus |
X | 5487374..5487435 | 533..594 | 100 | -> | Plus |
X | 5491532..5491894 | 595..956 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:20:37 Download gff for
BO12114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5372798..5373188 | 9..401 | 99 | -> | Plus |
arm_X | 5374866..5374996 | 402..532 | 100 | -> | Plus |
arm_X | 5381407..5381468 | 533..594 | 100 | -> | Plus |
arm_X | 5385565..5385927 | 595..956 | 99 | | Plus |
BO12114.complete Sequence
1339 bp assembled on 2006-10-11
GenBank Submission: FJ632315
> BO12114.complete
GAAGTTATCAGTCGACATGGACAACTATACGGACGTACTGTACCAGTACC
GCTTGGCACCGTCCGCCAGCCCGGAAATGGAAATGGAACTGGCCGATCCG
CGTCAGATGGTCCGCGGATTTCATCTGCCAACCAACGAGTCGCAGTTGGA
GATTCCCGACTATGGCAACGAGAGCCTGGACTATCCCAACTACCAGCAGA
TGGTCGGCGGACCGTGTCGCATGGAGGACAACAATATCAGCTATTGGAAT
CTCACCTGCGATTCGCCACTGGAGTACGCTATGCCGCTCTATGGCTACTG
TATGCCCTTCCTGCTGATCATCACCATTATCTCGAACTCCCTGATTGTGC
TCGTTTTGAGCAAGAAGAGCATGGCCACGCCCACCAATTTTGTGCTAATG
GGAATGGCTATATGCGATATGCTGACGGTTATATTTCCGGCACCCGGTCT
CTGGTATATGTACACATTCGGCAATCATTATAAGCCCCTGCATCCGGTCT
CCATGTGTCTGGCCTACAGCATTTTCAATGAGATAATGCCAGCCATGTGC
CACACCATCTCCGTTTGGCTAACTCTGGCCCTCGCCGTTCAAAGATACAT
CTACGTTTGCCACGCCCCCATGGCCCGAACGTGGTGCACGATGCCGCGTG
TGAGGCGGTGCACGGCGTATATTGCATTGCTGGCGTTTCTGCACCAACTG
CCCAGATTCTTCGACAGGACGTACATGCCGCTGGTGATCGAGTGGAACGG
CAGCCCAACGGAGGTGTGCCACTTGGAGACGTCGATGTGGGTGCACGATT
ACATTGGAGTGGACCTATACTACACAAGCTACTATCTGTTCCGGGTGCTG
TTCGTCCACCTGCTGCCCTGCATTATCCTGGTTACCCTGAACATTCTGCT
GTTCGCGGCGATGCGGCAGGCACAGGAGCGCCGAAAGCTCCTCTTCCGGG
AGAACCGGAAGAAGGAGTGCAAGAAACTGAGGGAGACCAATTGCACCACG
CTGATGCTAATTGTGGTCGTGTCGGTGTTCCTTCTAGCCGAGATACCCAT
TGCTGTGGTCACTGCGATGCACATCGTCAGTAGCCTGATTATCGAGTTCC
TGGACTATGGACTGGCCAACATTTGCATCATGCTGACGAACTTCTTCCTG
GTATTCAGCTATCCGATCAACTTCGGCATTTACTGCGGCATGTCGCGCCA
GTTTCGGGAGACTTTCAAGGAGATATTCCTCGGTCGGCTGATGGCCAAAA
AGGATAGCTCCACAAAATACTCGATCGTTAATGGCGCCCGCACCTGCACC
AACACCAACGAGACGGTCCTCGCAAGCTTTCTAGACCAT
BO12114.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:04:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SPR-RB | 1308 | CG16752-PB | 1..1305 | 17..1321 | 6525 | 100 | Plus |
SPR-RC | 1308 | CG16752-PC | 1..1305 | 17..1321 | 6525 | 100 | Plus |
SPR-RA | 1308 | CG16752-PA | 1..1305 | 17..1321 | 6525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:04:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SPR-RB | 3357 | CG16752-RB | 295..1603 | 13..1321 | 6530 | 99.9 | Plus |
SPR-RC | 2804 | CG16752-RC | 214..1522 | 13..1321 | 6530 | 99.9 | Plus |
SPR-RA | 3093 | CG16752-RA | 503..1811 | 13..1321 | 6530 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:04:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5491530..5492258 | 593..1321 | 3645 | 100 | Plus |
X | 23542271 | X | 5478767..5479156 | 13..402 | 1935 | 99.7 | Plus |
X | 23542271 | X | 5480832..5480967 | 401..536 | 665 | 99.3 | Plus |
X | 23542271 | X | 5487372..5487435 | 531..594 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:04:54 has no hits.
BO12114.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:37 Download gff for
BO12114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPR-RA | 1..1308 | 17..1322 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:48:19 Download gff for
BO12114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPR-RA | 502..1806 | 17..1323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:46 Download gff for
BO12114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPR-RA | 507..1811 | 17..1323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:38 Download gff for
BO12114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPR-RA | 496..1806 | 9..1321 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:10:23 Download gff for
BO12114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPR-RA | 507..1811 | 17..1323 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:10:23 Download gff for
BO12114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5478771..5479155 | 17..401 | 100 | -> | Plus |
X | 5480833..5480963 | 402..532 | 100 | -> | Plus |
X | 5487374..5487435 | 533..594 | 100 | -> | Plus |
X | 5491532..5492258 | 595..1323 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:46 Download gff for
BO12114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5372804..5373188 | 17..401 | 100 | -> | Plus |
arm_X | 5374866..5374996 | 402..532 | 100 | -> | Plus |
arm_X | 5381407..5381468 | 533..594 | 100 | -> | Plus |
arm_X | 5385565..5386291 | 595..1323 | 99 | | Plus |
BO12114.pep Sequence
Translation from 16 to 1339
> BO12114.pep
MDNYTDVLYQYRLAPSASPEMEMELADPRQMVRGFHLPTNESQLEIPDYG
NESLDYPNYQQMVGGPCRMEDNNISYWNLTCDSPLEYAMPLYGYCMPFLL
IITIISNSLIVLVLSKKSMATPTNFVLMGMAICDMLTVIFPAPGLWYMYT
FGNHYKPLHPVSMCLAYSIFNEIMPAMCHTISVWLTLALAVQRYIYVCHA
PMARTWCTMPRVRRCTAYIALLAFLHQLPRFFDRTYMPLVIEWNGSPTEV
CHLETSMWVHDYIGVDLYYTSYYLFRVLFVHLLPCIILVTLNILLFAAMR
QAQERRKLLFRENRKKECKKLRETNCTTLMLIVVVSVFLLAEIPIAVVTA
MHIVSSLIIEFLDYGLANICIMLTNFFLVFSYPINFGIYCGMSRQFRETF
KEIFLGRLMAKKDSSTKYSIVNGARTCTNTNETVLASFLDH
BO12114.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SPR-PB | 435 | CG16752-PB | 1..435 | 1..435 | 2317 | 100 | Plus |
SPR-PC | 435 | CG16752-PC | 1..435 | 1..435 | 2317 | 100 | Plus |
SPR-PA | 435 | CG16752-PA | 1..435 | 1..435 | 2317 | 100 | Plus |
FMRFaR-PB | 549 | CG2114-PB | 75..415 | 41..411 | 252 | 22.8 | Plus |
FMRFaR-PC | 549 | CG2114-PC | 75..415 | 41..411 | 252 | 22.8 | Plus |