Clone BO12114 Report

Search the DGRC for BO12114

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptSPR-RA
Protein status:BO12114.pep: validated full length
Sequenced Size:1339

Clone Sequence Records

BO12114.3prime Sequence

971 bp (850 high quality bases) assembled on 2006-04-20

> BO12114.3prime
ATGGTCTAGAAAGCTTGCGAGGACCGTCTCGTTGGTGTTGGTGCAGGTGC
GGGCGCCATTAACGATCGAGTATTTTGTGGAGCTATCCTTTTTGGCCATC
AGCCGACCGAGGAATATCTCCTTGAAAGTCTCCCGAAACTGGCGCGACAT
GCCGCAGTAAATGCCGAAGTTGATCGGATAGCTGAATACCAGGAAGAAGT
TCGTCAGCATGATGCAAATGTTGGCCAGTCCATAGTCCAGGAACTCGATA
ATCAGGCTACTGACGATGTGCATCGCAGTGACCACAGCAATGGGTATCTC
GGCTAGAAGGAACACCGACACGACCACAATTAGCATCAGCGTGGTGCAAT
TGGTCTCCCTCAGTTTCTTGCACTCCTTCTTCCGGTTCTCCCGGAAGAGG
AGCTTTCGGCGCTCCTGTGCCTGCCGCATCGCCGCGAACAGCAGAATGTT
CAGGGTAACCAGGATAATGCAGGGCAGCAGGTGGACGAACAGCACCCGGA
ACAGATAGTAGCTTGTGTAGTATAGGTCCACTCCAATGTAATCGTGCACC
CACATCGACGTCTCCAAGTGGCACACCTCCGTTGGGCTGCCGTTCCACTC
GATCACCAGCGGCATGTACGTCCTGTCGAAGAATCTGGGCAGTTGGTGCA
GAAACGCCAGCAATGCAATATACGCCGTGCACCGCCTCACACGCGGCATC
GTGCACCACGTTCGGGCCATGGGGGCGTGGCAAACGTAGATGTATCTTTG
AACGGCGAGGGCCAGAGTTAGCCAAACGGAGATGGTGTGGCACATGGCTG
GCATTATCTCATTGAAAATGCTGTAGGCCAGACACATGGAGACCGGATGC
AGGGGCTTATAATGATTGCCGAATGTGTACATATACCAGAGACCGGGTGC
CGGAAATATAACCGTCAGCATATCGCATATAGCCATCCCCATTAGCACAA
AATTGGTGGGCGTGGGCATGC

BO12114.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG16752-PA 1308 CG16752-RA 353..1305 971..19 4715 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
SPR-RB 3357 CG16752-RB 651..1603 971..19 4735 99.8 Minus
SPR-RC 2804 CG16752-RC 570..1522 971..19 4735 99.8 Minus
SPR-RA 3093 CG16752-RA 859..1811 971..19 4735 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:45:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5491530..5492258 747..19 3645 100 Minus
X 23542271 X 5480835..5480967 936..804 650 99.2 Minus
X 23542271 X 5487372..5487435 809..746 320 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:45:29 has no hits.

BO12114.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:23 Download gff for BO12114.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16752-PA 353..1308 18..971 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:17 Download gff for BO12114.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16752-PA 353..1308 18..971 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:29:39 Download gff for BO12114.3prime
Subject Subject Range Query Range Percent Splice Strand
SPR-RA 859..1811 19..971 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:36:28 Download gff for BO12114.3prime
Subject Subject Range Query Range Percent Splice Strand
SPR-RA 859..1811 19..971 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:36:28 Download gff for BO12114.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5479123..5479155 939..971 96 -> Minus
X 5480833..5480963 808..938 99 -> Minus
X 5487374..5487435 746..807 100 -> Minus
X 5491532..5492258 19..745 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:29:39 Download gff for BO12114.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5374866..5374996 808..938 99 -> Minus
arm_X 5381407..5381468 746..807 100 -> Minus
arm_X 5373156..5373188 939..971 96 -> Minus
arm_X 5385565..5386291 19..745 100   Minus

BO12114.5prime Sequence

956 bp (879 high quality bases) assembled on 2006-04-20

> BO12114.5prime
GAAGTTATCAGTCGACATGGACAACTATACGGACGTACTGTACCAGTACC
GCTTGGCACCGTCCGCCAGCCCGGAAATGGAAATGGAACTGGCCGATCCG
CGTCAGATGGTCCGCGGATTTCATCTGCCAACCAACGAGTCGCAGTTGGA
GATTCCCGACTATGGCAACGAGAGCCTGGACTATCCCAACTACCAGCAGA
TGGTCGGCGGACCGTGTCGCATGGAGGACAACAATATCAGCTATTGGAAT
CTCACCTGCGATTCGCCACTGGAGTACGCTATGCCGCTCTATGGCTACTG
TATGCCCTTCCTGCTGATCATCACCATTATCTCGAACTCCCTGATTGTGC
TCGTTTTGAGCAAGAAGAGCATGGCCACGCCCACCAATTTTGTGCTAATG
GGAATGGCTATATGCGATATGCTGACGGTTATATTTCCGGCACCCGGTCT
CTGGTATATGTACACATTCGGCAATCATTATAAGCCCCTGCATCCGGTCT
CCATGTGTCTGGCCTACAGCATTTTCAATGAGATAATGCCAGCCATGTGC
CACACCATCTCCGTTTGGCTAACTCTGGCCCTCGCCGTTCAAAGATACAT
CTACGTTTGCCACGCCCCCATGGCCCGAACGTGGTGCACGATGCCGCGTG
TGAGGCGGTGCACGGCGTATATTGCATTGCTGGCGTTTCTGCACCAACTG
CCCAGATTCTTCGACAGGACGTACATGCCGCTGGTGATCGAGTGGAACGG
CAGCCCAACGGAGGTGTGCCACTTGGAGACGTCGATGTGGGTGCACGATT
ACATTGGAGTGGACCTATACTACACAAGCTACTATCTGTTCCGGGTGCTG
TTCGTCCACCTGCTGCCCTGCATTATCCTGGTTACCCTGAACATTCTGCT
GTTCGCGGCGATGCGGCAGGCACAGGAGCGCCGAAAGCTCCTCTTCGGGA
GAACCG

BO12114.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG16752-PA 1308 CG16752-RA 1..930 17..946 4650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
SPR-RB 3357 CG16752-RB 295..1239 13..956 4685 99.8 Plus
SPR-RC 2804 CG16752-RC 214..1158 13..956 4685 99.8 Plus
SPR-RA 3093 CG16752-RA 503..1447 13..956 4685 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5478767..5479156 13..402 1935 99.7 Plus
X 23542271 X 5491530..5491894 593..956 1775 99.7 Plus
X 23542271 X 5480832..5480967 401..536 665 99.3 Plus
X 23542271 X 5487372..5487435 531..594 320 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:45:03 has no hits.

BO12114.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:24 Download gff for BO12114.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16752-PA 1..941 17..956 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:18 Download gff for BO12114.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16752-PA 1..941 17..956 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:20:37 Download gff for BO12114.5prime
Subject Subject Range Query Range Percent Splice Strand
SPR-RA 501..1447 9..956 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:52:05 Download gff for BO12114.5prime
Subject Subject Range Query Range Percent Splice Strand
SPR-RA 501..1447 9..956 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:52:05 Download gff for BO12114.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5478765..5479155 9..401 99 -> Plus
X 5480833..5480963 402..532 100 -> Plus
X 5487374..5487435 533..594 100 -> Plus
X 5491532..5491894 595..956 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:20:37 Download gff for BO12114.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5372798..5373188 9..401 99 -> Plus
arm_X 5374866..5374996 402..532 100 -> Plus
arm_X 5381407..5381468 533..594 100 -> Plus
arm_X 5385565..5385927 595..956 99   Plus

BO12114.complete Sequence

1339 bp assembled on 2006-10-11

GenBank Submission: FJ632315

> BO12114.complete
GAAGTTATCAGTCGACATGGACAACTATACGGACGTACTGTACCAGTACC
GCTTGGCACCGTCCGCCAGCCCGGAAATGGAAATGGAACTGGCCGATCCG
CGTCAGATGGTCCGCGGATTTCATCTGCCAACCAACGAGTCGCAGTTGGA
GATTCCCGACTATGGCAACGAGAGCCTGGACTATCCCAACTACCAGCAGA
TGGTCGGCGGACCGTGTCGCATGGAGGACAACAATATCAGCTATTGGAAT
CTCACCTGCGATTCGCCACTGGAGTACGCTATGCCGCTCTATGGCTACTG
TATGCCCTTCCTGCTGATCATCACCATTATCTCGAACTCCCTGATTGTGC
TCGTTTTGAGCAAGAAGAGCATGGCCACGCCCACCAATTTTGTGCTAATG
GGAATGGCTATATGCGATATGCTGACGGTTATATTTCCGGCACCCGGTCT
CTGGTATATGTACACATTCGGCAATCATTATAAGCCCCTGCATCCGGTCT
CCATGTGTCTGGCCTACAGCATTTTCAATGAGATAATGCCAGCCATGTGC
CACACCATCTCCGTTTGGCTAACTCTGGCCCTCGCCGTTCAAAGATACAT
CTACGTTTGCCACGCCCCCATGGCCCGAACGTGGTGCACGATGCCGCGTG
TGAGGCGGTGCACGGCGTATATTGCATTGCTGGCGTTTCTGCACCAACTG
CCCAGATTCTTCGACAGGACGTACATGCCGCTGGTGATCGAGTGGAACGG
CAGCCCAACGGAGGTGTGCCACTTGGAGACGTCGATGTGGGTGCACGATT
ACATTGGAGTGGACCTATACTACACAAGCTACTATCTGTTCCGGGTGCTG
TTCGTCCACCTGCTGCCCTGCATTATCCTGGTTACCCTGAACATTCTGCT
GTTCGCGGCGATGCGGCAGGCACAGGAGCGCCGAAAGCTCCTCTTCCGGG
AGAACCGGAAGAAGGAGTGCAAGAAACTGAGGGAGACCAATTGCACCACG
CTGATGCTAATTGTGGTCGTGTCGGTGTTCCTTCTAGCCGAGATACCCAT
TGCTGTGGTCACTGCGATGCACATCGTCAGTAGCCTGATTATCGAGTTCC
TGGACTATGGACTGGCCAACATTTGCATCATGCTGACGAACTTCTTCCTG
GTATTCAGCTATCCGATCAACTTCGGCATTTACTGCGGCATGTCGCGCCA
GTTTCGGGAGACTTTCAAGGAGATATTCCTCGGTCGGCTGATGGCCAAAA
AGGATAGCTCCACAAAATACTCGATCGTTAATGGCGCCCGCACCTGCACC
AACACCAACGAGACGGTCCTCGCAAGCTTTCTAGACCAT

BO12114.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
SPR-RB 1308 CG16752-PB 1..1305 17..1321 6525 100 Plus
SPR-RC 1308 CG16752-PC 1..1305 17..1321 6525 100 Plus
SPR-RA 1308 CG16752-PA 1..1305 17..1321 6525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
SPR-RB 3357 CG16752-RB 295..1603 13..1321 6530 99.9 Plus
SPR-RC 2804 CG16752-RC 214..1522 13..1321 6530 99.9 Plus
SPR-RA 3093 CG16752-RA 503..1811 13..1321 6530 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:04:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5491530..5492258 593..1321 3645 100 Plus
X 23542271 X 5478767..5479156 13..402 1935 99.7 Plus
X 23542271 X 5480832..5480967 401..536 665 99.3 Plus
X 23542271 X 5487372..5487435 531..594 320 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:04:54 has no hits.

BO12114.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:37 Download gff for BO12114.complete
Subject Subject Range Query Range Percent Splice Strand
SPR-RA 1..1308 17..1322 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:48:19 Download gff for BO12114.complete
Subject Subject Range Query Range Percent Splice Strand
SPR-RA 502..1806 17..1323 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:46 Download gff for BO12114.complete
Subject Subject Range Query Range Percent Splice Strand
SPR-RA 507..1811 17..1323 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:38 Download gff for BO12114.complete
Subject Subject Range Query Range Percent Splice Strand
SPR-RA 496..1806 9..1321 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:10:23 Download gff for BO12114.complete
Subject Subject Range Query Range Percent Splice Strand
SPR-RA 507..1811 17..1323 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:10:23 Download gff for BO12114.complete
Subject Subject Range Query Range Percent Splice Strand
X 5478771..5479155 17..401 100 -> Plus
X 5480833..5480963 402..532 100 -> Plus
X 5487374..5487435 533..594 100 -> Plus
X 5491532..5492258 595..1323 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:46 Download gff for BO12114.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5372804..5373188 17..401 100 -> Plus
arm_X 5374866..5374996 402..532 100 -> Plus
arm_X 5381407..5381468 533..594 100 -> Plus
arm_X 5385565..5386291 595..1323 99   Plus

BO12114.pep Sequence

Translation from 16 to 1339

> BO12114.pep
MDNYTDVLYQYRLAPSASPEMEMELADPRQMVRGFHLPTNESQLEIPDYG
NESLDYPNYQQMVGGPCRMEDNNISYWNLTCDSPLEYAMPLYGYCMPFLL
IITIISNSLIVLVLSKKSMATPTNFVLMGMAICDMLTVIFPAPGLWYMYT
FGNHYKPLHPVSMCLAYSIFNEIMPAMCHTISVWLTLALAVQRYIYVCHA
PMARTWCTMPRVRRCTAYIALLAFLHQLPRFFDRTYMPLVIEWNGSPTEV
CHLETSMWVHDYIGVDLYYTSYYLFRVLFVHLLPCIILVTLNILLFAAMR
QAQERRKLLFRENRKKECKKLRETNCTTLMLIVVVSVFLLAEIPIAVVTA
MHIVSSLIIEFLDYGLANICIMLTNFFLVFSYPINFGIYCGMSRQFRETF
KEIFLGRLMAKKDSSTKYSIVNGARTCTNTNETVLASFLDH

BO12114.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:03
Subject Length Description Subject Range Query Range Score Percent Strand
SPR-PB 435 CG16752-PB 1..435 1..435 2317 100 Plus
SPR-PC 435 CG16752-PC 1..435 1..435 2317 100 Plus
SPR-PA 435 CG16752-PA 1..435 1..435 2317 100 Plus
FMRFaR-PB 549 CG2114-PB 75..415 41..411 252 22.8 Plus
FMRFaR-PC 549 CG2114-PC 75..415 41..411 252 22.8 Plus