Clone Sequence Records
BO12115.3prime Sequence
552 bp (551 high quality bases) assembled on 2006-04-20
> BO12115.3prime
ATGGTCTAGAAAGCTTGGCCCAGCCCTTGTTCCAGCCGGCGGACTGAGCG
CCGGAATAGCCACCAGAGTAGCCACCAGACTGAGCGCCGGAGTAACCACC
GGAGTAGCCACCAGACTGAGCGCCGGAGTAACCGCCAGAGTAGCCTTCGT
TAATGACCTTCACGATGACAACCTTCTCAACGGGCCTGGGAGCAGCATAT
CCGCCAGAGTAGCCACCGCCGCCGGAGTATCCACCACCGCCGGAGTATCC
ACCACCGCCGGAGTAGCCGCCACCGTTGGAGTAGCCACCGGAGTAGCCGC
CGCCGCCTCCACCGCCGCCGAGCTTGCCGCCAAGACCACCGCTCAGACCG
CCCAGGCCGCCGCCCAATCCTCCGCCGAGACCGCCCAGCTTGCTCTGCAG
CAGCTGTCCGATGCCGCCAGCGCCTCCGCCAATAGAGCCGCCGCCTCCAC
CGCCGCCGCCAAGAAGACCGCCCAGGGAGGCCTGTCCCACGGACAGGATG
GCGGCAAGGATCACCAGGATGCAGGCAAAGGGTTTCATGTCGACTGATAA
CT
BO12115.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10598-PB | 693 | CG10598-RB | 172..690 | 538..20 | 2595 | 100 | Minus |
CG10598-PA | 522 | CG10598-RA | 1..519 | 538..20 | 2595 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:04:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10598-RC | 1711 | CG10598-RC | 475..998 | 543..20 | 2605 | 99.8 | Minus |
CG10598-RA | 729 | CG10598-RA | 50..573 | 543..20 | 2605 | 99.8 | Minus |
CG10598-RC | 1711 | CG10598-RC | 873..940 | 109..42 | 265 | 92.6 | Minus |
CG10598-RC | 1711 | CG10598-RC | 909..976 | 145..78 | 265 | 92.6 | Minus |
CG10598-RA | 729 | CG10598-RA | 448..515 | 109..42 | 265 | 92.6 | Minus |
CG10598-RA | 729 | CG10598-RA | 484..551 | 145..78 | 265 | 92.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:04:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17225870..17226393 | 20..543 | 2605 | 99.8 | Plus |
X | 23542271 | X | 17225892..17225959 | 78..145 | 265 | 92.6 | Plus |
X | 23542271 | X | 17225928..17225995 | 42..109 | 265 | 92.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:04:14 has no hits.
BO12115.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:25 Download gff for
BO12115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10598-PA | 1..522 | 15..538 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:19 Download gff for
BO12115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10598-PA | 1..522 | 15..538 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:55:53 Download gff for
BO12115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10598-RA | 50..576 | 15..543 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:53:21 Download gff for
BO12115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10598-RA | 50..576 | 15..543 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:53:21 Download gff for
BO12115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17225866..17226393 | 15..543 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:55:53 Download gff for
BO12115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17119899..17120426 | 15..543 | 99 | | Plus |
BO12115.5prime Sequence
552 bp (551 high quality bases) assembled on 2006-04-20
> BO12115.5prime
GAAGTTATCAGTCGACATGAAACCCTTTGCCTGCATCCTGGTGATCCTTG
CCGCCATCCTGTCCGTGGGACAGGCCTCCCTGGGCGGTCTTCTTGGCGGC
GGCGGTGGAGGCGGCGGCTCTATTGGCGGAGGCGCTGGCGGCATCGGACA
GCTGCTGCAGAGCAAGCTGGGCGGTCTCGGCGGAGGATTGGGCGGCGGCC
TGGGCGGTCTGAGCGGTGGTCTTGGCGGCAAGCTCGGCGGCGGTGGAGGC
GGCGGCGGCTACTCCGGTGGCTACTCCAACGGTGGCGGCTACTCCGGCGG
TGGTGGATACTCCGGCGGTGGTGGATACTCCGGCGGCGGTGGCTACTCTG
GCGGATATGCTGCTCCCAGGCCCGTTGAGAAGGTTGTCATCGTGAAGGTC
ATTAACGAAGGCTACTCTGGCGGTTACTCCGGCGCTCAGTCTGGTGGCTA
CTCCGGTGGTTACTCCGGCGCTCAGTCTGGTGGCTACTCTGGTGGCTATT
CCGGCGCTCAGTCCGCCGGCTGGAACAAGGGCTGGGCCAAGCTTTCTAGA
CC
BO12115.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10598-PB | 693 | CG10598-RB | 172..690 | 17..535 | 2595 | 100 | Plus |
CG10598-PA | 522 | CG10598-RA | 1..519 | 17..535 | 2595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:29:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10598-RC | 1711 | CG10598-RC | 475..998 | 12..535 | 2605 | 99.8 | Plus |
CG10598-RA | 729 | CG10598-RA | 50..573 | 12..535 | 2605 | 99.8 | Plus |
CG10598-RC | 1711 | CG10598-RC | 873..940 | 446..513 | 265 | 92.6 | Plus |
CG10598-RC | 1711 | CG10598-RC | 909..976 | 410..477 | 265 | 92.6 | Plus |
CG10598-RA | 729 | CG10598-RA | 448..515 | 446..513 | 265 | 92.6 | Plus |
CG10598-RA | 729 | CG10598-RA | 484..551 | 410..477 | 265 | 92.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:29:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17225870..17226393 | 535..12 | 2605 | 99.8 | Minus |
X | 23542271 | X | 17225892..17225959 | 477..410 | 265 | 92.6 | Minus |
X | 23542271 | X | 17225928..17225995 | 513..446 | 265 | 92.6 | Minus |
Blast to na_te.dros performed on 2015-02-04 10:29:18 has no hits.
BO12115.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:26 Download gff for
BO12115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10598-PA | 1..522 | 17..540 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:21 Download gff for
BO12115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10598-PA | 1..522 | 17..540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:26:02 Download gff for
BO12115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10598-RA | 50..576 | 12..540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:37:17 Download gff for
BO12115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10598-RA | 50..576 | 12..540 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:37:17 Download gff for
BO12115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17225866..17226393 | 12..540 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:26:02 Download gff for
BO12115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17119899..17120426 | 12..540 | 99 | | Minus |
BO12115.complete Sequence
554 bp assembled on 2008-08-15
> BO12115.complete
GAAGTTATCAGTCGACATGAAACCCTTTGCCTGCATCCTGGTGATCCTTG
CCGCCATCCTGTCCGTGGGACAGGCCTCCCTGGGCGGTCTTCTTGGCGGC
GGCGGTGGAGGCGGCGGCTCTATTGGCGGAGGCGCTGGCGGCATCGGACA
GCTGCTGCAGAGCAAGCTGGGCGGTCTCGGCGGAGGATTGGGCGGCGGCC
TGGGCGGTCTGAGCGGTGGTCTTGGCGGCAAGCTCGGCGGCGGTGGAGGC
GGCGGCGGCTACTCCGGTGGCTACTCCAACGGTGGCGGCTACTCCGGCGG
TGGTGGATACTCCGGCGGTGGTGGATACTCCGGCGGCGGTGGCTACTCTG
GCGGATATGCTGCTCCCAGGCCCGTTGAGAAGGTTGTCATCGTGAAGGTC
ATTAACGAAGGCTACTCTGGCGGTTACTCCGGCGCTCAGTCTGGTGGCTA
CTCCGGTGGTTACTCCGGCGCTCAGTCTGGTGGCTACTCTGGTGGCTATT
CCGGCGCTCAGTCCGCCGGCTGGAACAAGGGCTGGGCCAAGCTTTCTAGA
CCAT
BO12115.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:10:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10598-RC | 522 | CG10598-PC | 1..519 | 17..535 | 2595 | 100 | Plus |
CG10598-RA | 522 | CG10598-PA | 1..519 | 17..535 | 2595 | 100 | Plus |
CG10598-RC | 522 | CG10598-PC | 394..461 | 446..513 | 265 | 92.6 | Plus |
CG10598-RC | 522 | CG10598-PC | 430..497 | 410..477 | 265 | 92.6 | Plus |
CG10598-RA | 522 | CG10598-PA | 394..461 | 446..513 | 265 | 92.6 | Plus |
CG10598-RA | 522 | CG10598-PA | 430..497 | 410..477 | 265 | 92.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10598-RC | 1711 | CG10598-RC | 475..998 | 12..535 | 2605 | 99.8 | Plus |
CG10598-RA | 729 | CG10598-RA | 50..573 | 12..535 | 2605 | 99.8 | Plus |
CG10598-RC | 1711 | CG10598-RC | 873..940 | 446..513 | 265 | 92.6 | Plus |
CG10598-RC | 1711 | CG10598-RC | 909..976 | 410..477 | 265 | 92.6 | Plus |
CG10598-RA | 729 | CG10598-RA | 448..515 | 446..513 | 265 | 92.6 | Plus |
CG10598-RA | 729 | CG10598-RA | 484..551 | 410..477 | 265 | 92.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17225870..17226393 | 535..12 | 2605 | 99.8 | Minus |
X | 23542271 | X | 17225892..17225959 | 477..410 | 265 | 92.6 | Minus |
X | 23542271 | X | 17225928..17225995 | 513..446 | 265 | 92.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:10:59 has no hits.
BO12115.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:44:01 Download gff for
BO12115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10598-RA | 49..575 | 12..540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:29 Download gff for
BO12115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10598-RA | 55..573 | 17..538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:52 Download gff for
BO12115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10598-RA | 54..572 | 17..538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:39 Download gff for
BO12115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10598-RA | 55..573 | 17..538 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:39 Download gff for
BO12115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17225867..17226388 | 17..538 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:29 Download gff for
BO12115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17119900..17120421 | 17..538 | 99 | | Minus |
BO12115.pep Sequence
Translation from 16 to 553
> BO12115.pep
MKPFACILVILAAILSVGQASLGGLLGGGGGGGGSIGGGAGGIGQLLQSK
LGGLGGGLGGGLGGLSGGLGGKLGGGGGGGGYSGGYSNGGGYSGGGGYSG
GGGYSGGGGYSGGYAAPRPVEKVVIVKVINEGYSGGYSGAQSGGYSGGYS
GAQSGGYSGGYSGAQSAGWNKGWAKLSRP
BO12115.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10598-PC | 173 | CG10598-PC | 1..173 | 1..173 | 931 | 100 | Plus |
CG10598-PA | 173 | CG10598-PA | 1..173 | 1..173 | 931 | 100 | Plus |
CG14191-PA | 193 | CG14191-PA | 1..192 | 1..177 | 324 | 44.5 | Plus |
CG12523-PB | 250 | CG12523-PB | 3..159 | 7..172 | 286 | 40.1 | Plus |
CG12523-PA | 250 | CG12523-PA | 3..159 | 7..172 | 286 | 40.1 | Plus |
CG12523-PB | 250 | CG12523-PB | 120..242 | 19..169 | 158 | 36.2 | Plus |