Clone Sequence Records
BO12116.3prime Sequence
913 bp (841 high quality bases) assembled on 2006-04-20
> BO12116.3prime
ATGGTCTAGAAAGCTTGCCATCTTGCAGCTGTGTGGATACCTGGGGAAGG
GTATCACATCACGAATGTTTTTAACGCCCGTGACAAGCTGCAAGTAACGC
TCAAAGCCCATTCCAAATCCTCCAGTTGGAACTCCTCCATACTTTCGCAA
GTCAACGTACCATTCCAGATCCTTCGGCAGATGCGGATGGGATTTTAATA
TAGCAGGATCGCTTTCACGCAGGCTCCCGCCGCATAATTCTCCAACAGCT
GGCATCAGTAGGTCTAGGGCATGAACTCGATTGGGATTTGAACGCGAGAC
TTTCATGTAAAAAGGTTTCTGCTGAGCTGGCCAATCCACAACGAATACGG
GAGCACCACAATGGGCCACTAAAAAAAGTTCTTGGTCCTTGGAGAATCCT
TCGTTCAGGCTAATAGGAGTCTTAAGACTGTCCTTGTTTTCCTGCAGTAC
TTGCAGGGCTTCATCGTAGCTCATTATCTTCCACGGTACTTGCAGCCAAG
GGAGATCGGAGTTAGAGTTTGAATTCCGTTGACAGAAACTTAGGTCCTCG
CCACTCGTTTCCAGCAAACGGTTTGTCACAGATTTCAGCATCTGTTCAAT
GAACTGCGCTAACTTCTCCATCTCCTCCAAATGGGCAAGTTCCGCTTCAA
ACATATAGAACTCTGCTAAATGCAACGGAGACTTGGAGTTCTCCGCTCGG
AAGGCTGGTGAGAGAGTGTATGTCTTGCCTAAACCGTATGTCATGGCCTC
CAGGTGCAGTTGACCAGAGACGCTGAGGAATACTTTGCTATCAAAGTAGC
TTTGTTCCATGGGAATATTTGGTCGGTTCATCTGCTTGAGCAGGTCTTGG
GAGTCCGGTTGTACCCGAAACACTTCTCCTGCTCCCTCGCAATCGTTGGT
TGTGAGCAAAGGA
BO12116.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6796-PA | 1383 | CG6796-RA | 491..1380 | 908..19 | 4450 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6796-RA | 1482 | CG6796-RA | 524..1418 | 913..19 | 4460 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17002641..17003535 | 913..19 | 4460 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:50:20 has no hits.
BO12116.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:27 Download gff for
BO12116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6796-PA | 487..1383 | 16..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:22 Download gff for
BO12116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6796-PA | 487..1383 | 16..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:49:34 Download gff for
BO12116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6796-RA | 525..1418 | 19..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:05:22 Download gff for
BO12116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6796-RA | 525..1418 | 19..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:05:22 Download gff for
BO12116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17002642..17003535 | 19..912 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:49:34 Download gff for
BO12116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12890147..12891040 | 19..912 | 99 | | Minus |
BO12116.5prime Sequence
863 bp (791 high quality bases) assembled on 2006-04-20
> BO12116.5prime
GAAGTTATCAGTCGACATGTTATTCTTGAGACGATTTTACAGCAAATCCG
GACGGATAGCTCAAATATTAAAGACTAATAAGCCAGGCGACTCTTTGGCC
ATACAGGGATGGATCAAAAACGTTCGCCGGTTGAAGAACAACACATTTCT
GGACATCAATGATGGTTCCACGAGCAGTAGGTTCCAGGTGGTCGTGCCCC
GGACTCCGGAAAACCAGCACTTGGCTCCGGGAAGCGTCATTGCAGCTGTC
GGTAAAATTCAAGTGGCTCCAAATGGCAGCTTCGAGTTGCATGCGAATCA
GGTGGAAATGTTGGCTGAAGGACGGCTGCAGGAGGGTTATCCCTTCAGTC
CCAAACAGAAACATCCACCGGAATATGTACGTGAGCATCTACATCTTCGA
TCACGCGTAGATTTCGTTGCCGCCCAGATGAGGGTCAGACACAAAGCACA
AAAAGCTATACACGACTACATGGATGATCAGGATTTCGTGCAGATCAACA
CTCCTCTGCTCACAACCAACGATTGCGAGGGAGCAGGAGAAGTGTTTCGG
GTACAACCGGACTCCCAAGACCTGCTCAAGCAGATGAACCGACCAAATAT
TCCCATGGAACAAAGCTACTTTGATAGCAAAGTATTCCTCAGCGTCTCTG
GTCAACTGCACCTGGAGGCCATGACATACGGTTTAGGCAAGACATACACT
CTCTCACCAGCCTTCCGAGCGGAGAACTCCAAGTCTCCGTTGCATTTAGC
AGAGTTCTATATGTTTGAAGCGGAACTTGCCCATTTGGAGGAGGATGGAG
AAGTTAGCGCAGTTCATTGAACAGATGCTGAAATCTGTGACAAACCGTTT
GCTGGAAACGAGG
BO12116.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6796-PA | 1383 | CG6796-RA | 1..777 | 17..793 | 3885 | 100 | Plus |
CG6796-PA | 1383 | CG6796-RA | 777..845 | 794..862 | 345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6796-RA | 1482 | CG6796-RA | 39..883 | 17..862 | 4205 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:55:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17002453..17003000 | 314..862 | 2695 | 99.8 | Plus |
2R | 25286936 | 2R | 17002181..17002390 | 105..314 | 1050 | 100 | Plus |
2R | 25286936 | 2R | 17002032..17002122 | 17..107 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:55:21 has no hits.
BO12116.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:28 Download gff for
BO12116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6796-PA | 1..845 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:24 Download gff for
BO12116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6796-PA | 1..845 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:03:46 Download gff for
BO12116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6796-RA | 39..883 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:22:22 Download gff for
BO12116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6796-RA | 39..883 | 17..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:22:22 Download gff for
BO12116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17002032..17002121 | 17..106 | 100 | -> | Plus |
2R | 17002183..17002390 | 107..314 | 100 | -> | Plus |
2R | 17002454..17003000 | 315..863 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:03:46 Download gff for
BO12116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12889537..12889626 | 17..106 | 100 | -> | Plus |
arm_2R | 12889688..12889895 | 107..314 | 100 | -> | Plus |
arm_2R | 12889959..12890505 | 315..863 | 99 | | Plus |
BO12116.complete Sequence
1414 bp assembled on 2006-10-11
GenBank Submission: FJ632316
> BO12116.complete
GAAGTTATCAGTCGACATGTTATTCTTGAGACGATTTTACAGCAAATCCG
GACGGATAGCTCAAATATTAAAGACTAATAAGCCAGGCGACTCTTTGGCC
ATACAGGGATGGATCAAAAACGTTCGCCGGTTGAAGAACAACACATTTCT
GGACATCAATGATGGTTCCACGAGCAGTAGGTTCCAGGTGGTCGTGCCCC
GGACTCCGGAAAACCAGCACTTGGCTCCGGGAAGCGTCATTGCAGCTGTC
GGTAAAATTCAAGTGGCTCCAAATGGCAGCTTCGAGTTGCATGCGAATCA
GGTGGAAATGTTGGCTGAAGGACGGCTGCAGGAGGGTTATCCCTTCAGTC
CCAAACAGAAACATCCACCGGAATATGTACGTGAGCATCTACATCTTCGA
TCACGCGTAGATTTCGTTGCCGCCCAGATGAGGGTCAGACACAAAGCACA
AAAAGCTATACACGACTACATGGATGATCAGGATTTCGTGCAGATCAACA
CTCCTCTGCTCACAACCAACGATTGCGAGGGAGCAGGAGAAGTGTTTCGG
GTACAACCGGACTCCCAAGACCTGCTCAAGCAGATGAACCGACCAAATAT
TCCCATGGAACAAAGCTACTTTGATAGCAAAGTATTCCTCAGCGTCTCTG
GTCAACTGCACCTGGAGGCCATGACATACGGTTTAGGCAAGACATACACT
CTCTCACCAGCCTTCCGAGCGGAGAACTCCAAGTCTCCGTTGCATTTAGC
AGAGTTCTATATGTTTGAAGCGGAACTTGCCCATTTGGAGGAGATGGAGA
AGTTAGCGCAGTTCATTGAACAGATGCTGAAATCTGTGACAAACCGTTTG
CTGGAAACGAGTGGCGAGGACCTAAGTTTCTGTCAACGGAATTCAAACTC
TAACTCCGATCTCCCTTGGCTGCAAGTACCGTGGAAGATAATGAGCTACG
ATGAAGCCCTGCAAGTACTGCAGGAAAACAAGGACAGTCTTAAGACTCCT
ATTAGCCTGAACGAAGGATTCTCCAAGGACCAAGAACTTTTTTTAGTGGC
CCATTGTGGTGCTCCCGTATTCGTTGTGGATTGGCCAGCTCAGCAGAAAC
CTTTTTACATGAAAGTCTCGCGTTCAAATCCCAATCGAGTTCATGCCCTA
GACCTACTGATGCCAGCTGTTGGAGAATTATGCGGCGGGAGCCTGCGTGA
AAGCGATCCTGCTATATTAAAATCCCATCCGCATCTGCCGAAGGATCTGG
AATGGTACGTTGACTTGCGAAAGTATGGAGGAGTTCCAACTGGAGGATTT
GGAATGGGCTTTGAGCGTTACTTGCAGCTTGTCACGGGCGTTAAAAACAT
TCGTGATGTGATACCCTTCCCCAGGTATCCACACAGCTGCAAGATGGCAA
GCTTTCTAGACCAT
BO12116.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:31:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6796-RA | 1383 | CG6796-PA | 1..1380 | 17..1396 | 6900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:31:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6796-RA | 1482 | CG6796-RA | 39..1418 | 17..1396 | 6900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:31:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17002453..17003535 | 314..1396 | 5415 | 100 | Plus |
2R | 25286936 | 2R | 17002181..17002390 | 105..314 | 1050 | 100 | Plus |
2R | 25286936 | 2R | 17002032..17002122 | 17..107 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:31:02 has no hits.
BO12116.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:40 Download gff for
BO12116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6796-RA | 1..1383 | 17..1399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:31 Download gff for
BO12116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6796-RA | 19..1398 | 17..1396 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:20 Download gff for
BO12116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6796-RA | 44..1418 | 22..1398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:41 Download gff for
BO12116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6796-RA | 19..1398 | 17..1396 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:49 Download gff for
BO12116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6796-RA | 44..1418 | 22..1398 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:49 Download gff for
BO12116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17002037..17002121 | 22..106 | 100 | -> | Plus |
2R | 17002183..17002390 | 107..314 | 100 | -> | Plus |
2R | 17002454..17003535 | 315..1398 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:20 Download gff for
BO12116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12889542..12889626 | 22..106 | 100 | -> | Plus |
arm_2R | 12889688..12889895 | 107..314 | 100 | -> | Plus |
arm_2R | 12889959..12891040 | 315..1398 | 99 | | Plus |
BO12116.pep Sequence
Translation from 16 to 1414
> BO12116.pep
MLFLRRFYSKSGRIAQILKTNKPGDSLAIQGWIKNVRRLKNNTFLDINDG
STSSRFQVVVPRTPENQHLAPGSVIAAVGKIQVAPNGSFELHANQVEMLA
EGRLQEGYPFSPKQKHPPEYVREHLHLRSRVDFVAAQMRVRHKAQKAIHD
YMDDQDFVQINTPLLTTNDCEGAGEVFRVQPDSQDLLKQMNRPNIPMEQS
YFDSKVFLSVSGQLHLEAMTYGLGKTYTLSPAFRAENSKSPLHLAEFYMF
EAELAHLEEMEKLAQFIEQMLKSVTNRLLETSGEDLSFCQRNSNSNSDLP
WLQVPWKIMSYDEALQVLQENKDSLKTPISLNEGFSKDQELFLVAHCGAP
VFVVDWPAQQKPFYMKVSRSNPNRVHALDLLMPAVGELCGGSLRESDPAI
LKSHPHLPKDLEWYVDLRKYGGVPTGGFGMGFERYLQLVTGVKNIRDVIP
FPRYPHSCKMASFLDH
BO12116.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6796-PA | 460 | CG6796-PA | 1..460 | 1..460 | 2420 | 100 | Plus |
Aats-asn-PB | 558 | CG10687-PB | 140..557 | 29..459 | 373 | 25.9 | Plus |
Aats-asn-PA | 558 | CG10687-PA | 140..557 | 29..459 | 373 | 25.9 | Plus |
Aats-asp-PB | 531 | CG3821-PB | 150..526 | 75..455 | 235 | 24.8 | Plus |
Aats-asp-PC | 531 | CG3821-PC | 150..526 | 75..455 | 235 | 24.8 | Plus |