Clone BO12116 Report

Search the DGRC for BO12116

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG6796-RA
Protein status:BO12116.pep: validated full length
Sequenced Size:1414

Clone Sequence Records

BO12116.3prime Sequence

913 bp (841 high quality bases) assembled on 2006-04-20

> BO12116.3prime
ATGGTCTAGAAAGCTTGCCATCTTGCAGCTGTGTGGATACCTGGGGAAGG
GTATCACATCACGAATGTTTTTAACGCCCGTGACAAGCTGCAAGTAACGC
TCAAAGCCCATTCCAAATCCTCCAGTTGGAACTCCTCCATACTTTCGCAA
GTCAACGTACCATTCCAGATCCTTCGGCAGATGCGGATGGGATTTTAATA
TAGCAGGATCGCTTTCACGCAGGCTCCCGCCGCATAATTCTCCAACAGCT
GGCATCAGTAGGTCTAGGGCATGAACTCGATTGGGATTTGAACGCGAGAC
TTTCATGTAAAAAGGTTTCTGCTGAGCTGGCCAATCCACAACGAATACGG
GAGCACCACAATGGGCCACTAAAAAAAGTTCTTGGTCCTTGGAGAATCCT
TCGTTCAGGCTAATAGGAGTCTTAAGACTGTCCTTGTTTTCCTGCAGTAC
TTGCAGGGCTTCATCGTAGCTCATTATCTTCCACGGTACTTGCAGCCAAG
GGAGATCGGAGTTAGAGTTTGAATTCCGTTGACAGAAACTTAGGTCCTCG
CCACTCGTTTCCAGCAAACGGTTTGTCACAGATTTCAGCATCTGTTCAAT
GAACTGCGCTAACTTCTCCATCTCCTCCAAATGGGCAAGTTCCGCTTCAA
ACATATAGAACTCTGCTAAATGCAACGGAGACTTGGAGTTCTCCGCTCGG
AAGGCTGGTGAGAGAGTGTATGTCTTGCCTAAACCGTATGTCATGGCCTC
CAGGTGCAGTTGACCAGAGACGCTGAGGAATACTTTGCTATCAAAGTAGC
TTTGTTCCATGGGAATATTTGGTCGGTTCATCTGCTTGAGCAGGTCTTGG
GAGTCCGGTTGTACCCGAAACACTTCTCCTGCTCCCTCGCAATCGTTGGT
TGTGAGCAAAGGA

BO12116.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6796-PA 1383 CG6796-RA 491..1380 908..19 4450 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6796-RA 1482 CG6796-RA 524..1418 913..19 4460 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17002641..17003535 913..19 4460 99.9 Minus
Blast to na_te.dros performed on 2015-02-10 18:50:20 has no hits.

BO12116.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:27 Download gff for BO12116.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6796-PA 487..1383 16..912 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:22 Download gff for BO12116.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6796-PA 487..1383 16..912 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:49:34 Download gff for BO12116.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6796-RA 525..1418 19..912 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:05:22 Download gff for BO12116.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6796-RA 525..1418 19..912 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:05:22 Download gff for BO12116.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17002642..17003535 19..912 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:49:34 Download gff for BO12116.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12890147..12891040 19..912 99   Minus

BO12116.5prime Sequence

863 bp (791 high quality bases) assembled on 2006-04-20

> BO12116.5prime
GAAGTTATCAGTCGACATGTTATTCTTGAGACGATTTTACAGCAAATCCG
GACGGATAGCTCAAATATTAAAGACTAATAAGCCAGGCGACTCTTTGGCC
ATACAGGGATGGATCAAAAACGTTCGCCGGTTGAAGAACAACACATTTCT
GGACATCAATGATGGTTCCACGAGCAGTAGGTTCCAGGTGGTCGTGCCCC
GGACTCCGGAAAACCAGCACTTGGCTCCGGGAAGCGTCATTGCAGCTGTC
GGTAAAATTCAAGTGGCTCCAAATGGCAGCTTCGAGTTGCATGCGAATCA
GGTGGAAATGTTGGCTGAAGGACGGCTGCAGGAGGGTTATCCCTTCAGTC
CCAAACAGAAACATCCACCGGAATATGTACGTGAGCATCTACATCTTCGA
TCACGCGTAGATTTCGTTGCCGCCCAGATGAGGGTCAGACACAAAGCACA
AAAAGCTATACACGACTACATGGATGATCAGGATTTCGTGCAGATCAACA
CTCCTCTGCTCACAACCAACGATTGCGAGGGAGCAGGAGAAGTGTTTCGG
GTACAACCGGACTCCCAAGACCTGCTCAAGCAGATGAACCGACCAAATAT
TCCCATGGAACAAAGCTACTTTGATAGCAAAGTATTCCTCAGCGTCTCTG
GTCAACTGCACCTGGAGGCCATGACATACGGTTTAGGCAAGACATACACT
CTCTCACCAGCCTTCCGAGCGGAGAACTCCAAGTCTCCGTTGCATTTAGC
AGAGTTCTATATGTTTGAAGCGGAACTTGCCCATTTGGAGGAGGATGGAG
AAGTTAGCGCAGTTCATTGAACAGATGCTGAAATCTGTGACAAACCGTTT
GCTGGAAACGAGG

BO12116.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6796-PA 1383 CG6796-RA 1..777 17..793 3885 100 Plus
CG6796-PA 1383 CG6796-RA 777..845 794..862 345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG6796-RA 1482 CG6796-RA 39..883 17..862 4205 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17002453..17003000 314..862 2695 99.8 Plus
2R 25286936 2R 17002181..17002390 105..314 1050 100 Plus
2R 25286936 2R 17002032..17002122 17..107 455 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:55:21 has no hits.

BO12116.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:28 Download gff for BO12116.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6796-PA 1..845 17..863 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:24 Download gff for BO12116.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6796-PA 1..845 17..863 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:03:46 Download gff for BO12116.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6796-RA 39..883 17..863 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:22:22 Download gff for BO12116.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6796-RA 39..883 17..863 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:22:22 Download gff for BO12116.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17002032..17002121 17..106 100 -> Plus
2R 17002183..17002390 107..314 100 -> Plus
2R 17002454..17003000 315..863 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:03:46 Download gff for BO12116.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12889537..12889626 17..106 100 -> Plus
arm_2R 12889688..12889895 107..314 100 -> Plus
arm_2R 12889959..12890505 315..863 99   Plus

BO12116.complete Sequence

1414 bp assembled on 2006-10-11

GenBank Submission: FJ632316

> BO12116.complete
GAAGTTATCAGTCGACATGTTATTCTTGAGACGATTTTACAGCAAATCCG
GACGGATAGCTCAAATATTAAAGACTAATAAGCCAGGCGACTCTTTGGCC
ATACAGGGATGGATCAAAAACGTTCGCCGGTTGAAGAACAACACATTTCT
GGACATCAATGATGGTTCCACGAGCAGTAGGTTCCAGGTGGTCGTGCCCC
GGACTCCGGAAAACCAGCACTTGGCTCCGGGAAGCGTCATTGCAGCTGTC
GGTAAAATTCAAGTGGCTCCAAATGGCAGCTTCGAGTTGCATGCGAATCA
GGTGGAAATGTTGGCTGAAGGACGGCTGCAGGAGGGTTATCCCTTCAGTC
CCAAACAGAAACATCCACCGGAATATGTACGTGAGCATCTACATCTTCGA
TCACGCGTAGATTTCGTTGCCGCCCAGATGAGGGTCAGACACAAAGCACA
AAAAGCTATACACGACTACATGGATGATCAGGATTTCGTGCAGATCAACA
CTCCTCTGCTCACAACCAACGATTGCGAGGGAGCAGGAGAAGTGTTTCGG
GTACAACCGGACTCCCAAGACCTGCTCAAGCAGATGAACCGACCAAATAT
TCCCATGGAACAAAGCTACTTTGATAGCAAAGTATTCCTCAGCGTCTCTG
GTCAACTGCACCTGGAGGCCATGACATACGGTTTAGGCAAGACATACACT
CTCTCACCAGCCTTCCGAGCGGAGAACTCCAAGTCTCCGTTGCATTTAGC
AGAGTTCTATATGTTTGAAGCGGAACTTGCCCATTTGGAGGAGATGGAGA
AGTTAGCGCAGTTCATTGAACAGATGCTGAAATCTGTGACAAACCGTTTG
CTGGAAACGAGTGGCGAGGACCTAAGTTTCTGTCAACGGAATTCAAACTC
TAACTCCGATCTCCCTTGGCTGCAAGTACCGTGGAAGATAATGAGCTACG
ATGAAGCCCTGCAAGTACTGCAGGAAAACAAGGACAGTCTTAAGACTCCT
ATTAGCCTGAACGAAGGATTCTCCAAGGACCAAGAACTTTTTTTAGTGGC
CCATTGTGGTGCTCCCGTATTCGTTGTGGATTGGCCAGCTCAGCAGAAAC
CTTTTTACATGAAAGTCTCGCGTTCAAATCCCAATCGAGTTCATGCCCTA
GACCTACTGATGCCAGCTGTTGGAGAATTATGCGGCGGGAGCCTGCGTGA
AAGCGATCCTGCTATATTAAAATCCCATCCGCATCTGCCGAAGGATCTGG
AATGGTACGTTGACTTGCGAAAGTATGGAGGAGTTCCAACTGGAGGATTT
GGAATGGGCTTTGAGCGTTACTTGCAGCTTGTCACGGGCGTTAAAAACAT
TCGTGATGTGATACCCTTCCCCAGGTATCCACACAGCTGCAAGATGGCAA
GCTTTCTAGACCAT

BO12116.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6796-RA 1383 CG6796-PA 1..1380 17..1396 6900 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6796-RA 1482 CG6796-RA 39..1418 17..1396 6900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17002453..17003535 314..1396 5415 100 Plus
2R 25286936 2R 17002181..17002390 105..314 1050 100 Plus
2R 25286936 2R 17002032..17002122 17..107 455 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:31:02 has no hits.

BO12116.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:40 Download gff for BO12116.complete
Subject Subject Range Query Range Percent Splice Strand
CG6796-RA 1..1383 17..1399 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:31 Download gff for BO12116.complete
Subject Subject Range Query Range Percent Splice Strand
CG6796-RA 19..1398 17..1396 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:20 Download gff for BO12116.complete
Subject Subject Range Query Range Percent Splice Strand
CG6796-RA 44..1418 22..1398 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:41 Download gff for BO12116.complete
Subject Subject Range Query Range Percent Splice Strand
CG6796-RA 19..1398 17..1396 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:49 Download gff for BO12116.complete
Subject Subject Range Query Range Percent Splice Strand
CG6796-RA 44..1418 22..1398 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:49 Download gff for BO12116.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17002037..17002121 22..106 100 -> Plus
2R 17002183..17002390 107..314 100 -> Plus
2R 17002454..17003535 315..1398 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:20 Download gff for BO12116.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12889542..12889626 22..106 100 -> Plus
arm_2R 12889688..12889895 107..314 100 -> Plus
arm_2R 12889959..12891040 315..1398 99   Plus

BO12116.pep Sequence

Translation from 16 to 1414

> BO12116.pep
MLFLRRFYSKSGRIAQILKTNKPGDSLAIQGWIKNVRRLKNNTFLDINDG
STSSRFQVVVPRTPENQHLAPGSVIAAVGKIQVAPNGSFELHANQVEMLA
EGRLQEGYPFSPKQKHPPEYVREHLHLRSRVDFVAAQMRVRHKAQKAIHD
YMDDQDFVQINTPLLTTNDCEGAGEVFRVQPDSQDLLKQMNRPNIPMEQS
YFDSKVFLSVSGQLHLEAMTYGLGKTYTLSPAFRAENSKSPLHLAEFYMF
EAELAHLEEMEKLAQFIEQMLKSVTNRLLETSGEDLSFCQRNSNSNSDLP
WLQVPWKIMSYDEALQVLQENKDSLKTPISLNEGFSKDQELFLVAHCGAP
VFVVDWPAQQKPFYMKVSRSNPNRVHALDLLMPAVGELCGGSLRESDPAI
LKSHPHLPKDLEWYVDLRKYGGVPTGGFGMGFERYLQLVTGVKNIRDVIP
FPRYPHSCKMASFLDH

BO12116.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6796-PA 460 CG6796-PA 1..460 1..460 2420 100 Plus
Aats-asn-PB 558 CG10687-PB 140..557 29..459 373 25.9 Plus
Aats-asn-PA 558 CG10687-PA 140..557 29..459 373 25.9 Plus
Aats-asp-PB 531 CG3821-PB 150..526 75..455 235 24.8 Plus
Aats-asp-PC 531 CG3821-PC 150..526 75..455 235 24.8 Plus