Clone Sequence Records
BO12118.3prime Sequence
947 bp (851 high quality bases) assembled on 2006-04-20
> BO12118.3prime
ATGGTCTAGAAAGCTTGCCTTTTCATCGCAATCAGATTTTGTTTTGGTCT
CCTGTTCAGCGACTATAGGGGTTTCCTTATCATGGTCAGATTTAAGAGGC
TTCTTCTCCTCCTCATCGTCCTGATCGCGTCCCAGATTCTGAAGTTCCTT
TAGCCCGGAATCAGGCAACTGGTGACAGCCACTGTTCCATGGCTGCAATT
TGGATTCCGAGAAAAGCACATACAAGATGCCACTGCCTGTTAACATCAAC
GAGGTGAGCAGGAACACATTCTTCCAGGCATCAATGGTTTGATTATTGTG
AGTAAGTTGGCCCACGATGAAGGGCGATATGAAGCCCGGCATTCCACCAA
TCATTCCACTCACGCCCAGGACAATGCCCGCATAGTTTGGCGACAGATCG
ACCATGGAGGCCAAGGGACCCGAGGACACGGCGCCGTGAAGCATGGTGGC
CACTGTGACCAACACGATGGCAGCCGTCGCGTTGTAGCCAAAGTAAGCTA
GTGCTAATACGATTAAGCCTTTAGTGCCACAGCAAATGAATGTGGCCAAC
TTGCGGACATTTGTGCGACTCATCTTATCCGTGCGCAGAAGATAGTCGGC
GAATATGGAGAAGACGTAGGCGAAGAGCATTCTCATAAGATGCGGCAGTC
CGGACAGGAAGCCAGTCGCTCGAATGTTCCAGTGGTGAATCAGTCTGAAG
TAAGTCGGCGCATGGGTCATCAAAGTGAAGAGACCCCAGATGCCACCCCA
TTGGGCGACCACATTCAGCCAAACGGGACGAGAGGTGGCAATCGCCTTCC
AGGGTGTGGGTCCCTTGCTGCCCTGAATGGAGGCACCCAAGGACTTCTCG
ATGAACTTTCTCTCCGAGTCAGCGATGCGGGGATGCTCAGCGGGACTATC
GAACACAAGGAACTGCCAGGCGATGAACCAAGAGTGCCCACGATTCC
BO12118.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10207-PA | 1575 | NaPi-T-RA | 661..1572 | 930..19 | 4560 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:53:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NaPi-T-RB | 1918 | CG10207-RB | 746..1675 | 947..19 | 4625 | 99.9 | Minus |
| NaPi-T-RA | 2660 | CG10207-RA | 1080..2009 | 947..19 | 4625 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:53:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14843371..14843643 | 19..291 | 1365 | 100 | Plus |
| 2R | 25286936 | 2R | 14844213..14844494 | 667..947 | 1360 | 99.6 | Plus |
| 2R | 25286936 | 2R | 14843708..14843949 | 292..533 | 1210 | 100 | Plus |
| 2R | 25286936 | 2R | 14844020..14844154 | 533..667 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:53:33 has no hits.
BO12118.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:31 Download gff for
BO12118.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10207-PA | 643..1575 | 16..947 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:29 Download gff for
BO12118.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10207-PA | 643..1575 | 16..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:35:11 Download gff for
BO12118.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NaPi-T-RA | 1080..2009 | 19..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:50:04 Download gff for
BO12118.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NaPi-T-RA | 1080..2009 | 19..947 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:50:04 Download gff for
BO12118.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14843371..14843643 | 19..291 | 100 | <- | Plus |
| 2R | 14843708..14843949 | 292..533 | 100 | <- | Plus |
| 2R | 14844021..14844153 | 534..666 | 100 | <- | Plus |
| 2R | 14844213..14844494 | 667..947 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:35:11 Download gff for
BO12118.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10730876..10731148 | 19..291 | 100 | <- | Plus |
| arm_2R | 10731213..10731454 | 292..533 | 100 | <- | Plus |
| arm_2R | 10731526..10731658 | 534..666 | 100 | <- | Plus |
| arm_2R | 10731718..10731999 | 667..947 | 99 | | Plus |
BO12118.5prime Sequence
827 bp (806 high quality bases) assembled on 2006-04-20
> BO12118.5prime
GAAGTTATCAGTCGACATGGGCCAAGTCGAGGCGCGCACTGTGCTGTGGT
ACATGACATTCATCGGTTTCATCGTGAACTACATGATCCGGATCAATCTG
AACATTACCATTGTGGACATGATTGCCGGGAAGGGTGCTATTACCTCAAA
TGAAACCCACGAGAACTCTACGGACTTGGCTGCCCTTGCGGAAATGAATG
AACGATTTTCGCTGGAGCGTTGGTTTTTGGACTGGGCGAATATTCCGTAC
GAAAAGAATGGATTTCACTGGAACGAGAAGCAGCAGGGCGCTCTGTTGGG
ATCATTTTTCTGGGCCCACTGGACACTGCAGATTCCCGGCGGCATCTTGG
CCACCAAATATGGTACTAAACTGGTGTTTGGTTGGTCCAATGGCATCGGT
GTGTTCTGCTGTTTCCTTATACCAATCGTATCGTACTGGAGCTACACGGG
CTTGATTATCCTGCGAGTATTCCAGGGGTGGATAACGGGCTTGGCCTGGC
CATCGATGCACGTGCTCACTGCCAAATGGATTCCGCCCAACGAGCGCAGC
AAGTTTGTCAGTGCTTACTTGGGCAGTTCTGTGGGCGTGGCCCTGTTCTA
TCCGATCTTCGGCTACATCATCGATTGGACACGGTGGGAGTGGGTCTACT
ATATCTGCGGAATCGTGGGCACTCTCTGGTTCATCGCCTGGCAGTTCCTT
GTGTTCGATAGTCCCGCTGAGCATCCCCGCATCGCTGACTCGGAGAGAAA
GTTCATCGAGAAGTCCTTGGGTGCCTCCATTCAGGGCAGCAAGGGACCCA
CACCCTGGAAGGCGATTGCCACCTCTC
BO12118.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10207-PA | 1575 | NaPi-T-RA | 1..811 | 17..827 | 4055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:34:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NaPi-T-RB | 1918 | CG10207-RB | 103..914 | 16..827 | 4060 | 100 | Plus |
| NaPi-T-RA | 2660 | CG10207-RA | 437..1248 | 16..827 | 4060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:33:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14844326..14844670 | 827..483 | 1710 | 99.7 | Minus |
| 2R | 25286936 | 2R | 14844719..14844965 | 488..242 | 1235 | 100 | Minus |
| 2R | 25286936 | 2R | 14845082..14845298 | 241..25 | 1085 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:33:56 has no hits.
BO12118.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:32 Download gff for
BO12118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10207-PA | 1..811 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:30 Download gff for
BO12118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10207-PA | 1..811 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:54:40 Download gff for
BO12118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NaPi-T-RA | 430..1248 | 9..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:30:09 Download gff for
BO12118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NaPi-T-RA | 430..1248 | 9..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:30:09 Download gff for
BO12118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14844326..14844665 | 488..827 | 100 | <- | Minus |
| 2R | 14844720..14844965 | 242..487 | 100 | <- | Minus |
| 2R | 14845082..14845298 | 25..241 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:54:40 Download gff for
BO12118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10731831..10732170 | 488..827 | 100 | <- | Minus |
| arm_2R | 10732225..10732470 | 242..487 | 100 | <- | Minus |
| arm_2R | 10732587..10732803 | 25..241 | 100 | | Minus |
BO12118.complete Sequence
1606 bp assembled on 2006-10-11
GenBank Submission: FJ632317
> BO12118.complete
GAAGTTATCAGTCGACATGGGCCAAGTCGAGGCGCGCACTGTGCTGTGGT
ACATGACATTCATCGGTTTCATCGTGAACTACATGATCCGGATCAATCTG
AACATTACCATTGTGGACATGATTGCCGGGAAGGGTGCTATTACCTCAAA
TGAAACCCACGAGAACTCTACGGACTTGGCTGCCCTTGCGGAAATGAATG
AACGATTTTCGCTGGAGCGTTGGTTTTTGGACTGGGCGAATATTCCGTAC
GAAAAGAATGGATTTCACTGGAACGAGAAGCAGCAGGGCGCTCTGTTGGG
ATCATTTTTCTGGGCCCACTGGACACTGCAGATTCCCGGCGGCATCTTGG
CCACCAAATATGGTACTAAACTGGTGTTTGGTTGGTCCAATGGCATCGGT
GTGTTCTGCTGTTTCCTTATACCAATCGTATCGTACTGGAGCTACACGGG
CTTGATTATCCTGCGAGTATTCCAGGGGTGGATAACGGGCTTGGCCTGGC
CATCGATGCACGTGCTCACTGCCAAATGGATTCCGCCCAACGAGCGCAGC
AAGTTTGTCAGTGCTTACTTGGGCAGTTCTGTGGGCGTGGCCCTGTTCTA
TCCGATCTTCGGCTACATCATCGATTGGACACGGTGGGAGTGGGTCTACT
ATATCTGCGGAATCGTGGGCACTCTCTGGTTCATCGCCTGGCAGTTCCTT
GTGTTCGATAGTCCCGCTGAGCATCCCCGCATCGCTGACTCGGAGAGAAA
GTTCATCGAGAAGTCCTTGGGTGCCTCCATTCAGGGCAGCAAGGGACCCA
CACCCTGGAAGGCGATTGCCACCTCTCGTCCCGTTTGGCTGAATGTGGTC
GCCCAATGGGGTGGCATCTGGGGTCTCTTCACTTTGATGACCCATGCGCC
GACTTACTTCAGACTGATTCACCACTGGAACATTCGAGCGACTGGCTTCC
TGTCCGGACTGCCGCATCTTATGAGAATGCTCTTCGCCTACGTCTTCTCC
ATATTCGCCGACTATCTTCTGCGCACGGATAAGATGAGTCGCACAAATGT
CCGCAAGTTGGCCACATTCATTTGCTGTGGCACTAAAGGCTTAATCGTAT
TAGCACTAGCTTACTTTGGCTACAACGCGACGGCTGCCATCGTGTTGGTC
ACAGTGGCCACCATGCTTCACGGCGCCGTGTCCTCGGGTCCCTTGGCCTC
CATGGTCGATCTGTCGCCAAACTATGCGGGCATTGTCCTGGGCGTGAGTG
GAATGATTGGTGGAATGCCGGGCTTCATATCGCCCTTCATCGTGGGCCAA
CTTACTCACAATAATCAAACCATTGATGCCTGGAAGAATGTGTTCCTGCT
CACCTCGTTGATGTTAACAGGCAGTGGCATCTTGTATGTGCTTTTCTCGG
AATCCAAATTGCAGCCATGGAACAGTGGCTGTCACCAGTTGCCTGATTCC
GGGCTAAAGGAACTTCAGAATCTGGGACGCGATCAGGACGATGAGGAGGA
GAAGAAGCCTCTTAAATCTGACCATGATAAGGAAACCCCTATAGTCGCTG
AACAGGAGACCAAAACAAAATCTGATTGCGATGAAAAGGCAAGCTTTCTA
GACCAT
BO12118.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NaPi-T-RB | 1575 | CG10207-PB | 1..1572 | 17..1588 | 7860 | 100 | Plus |
| NaPi-T-RA | 1575 | CG10207-PA | 1..1572 | 17..1588 | 7860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NaPi-T-RB | 1918 | CG10207-RB | 103..1675 | 16..1588 | 7865 | 100 | Plus |
| NaPi-T-RA | 2660 | CG10207-RA | 437..2009 | 16..1588 | 7865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14844213..14844670 | 940..483 | 2275 | 99.8 | Minus |
| 2R | 25286936 | 2R | 14843371..14843643 | 1588..1316 | 1365 | 100 | Minus |
| 2R | 25286936 | 2R | 14844719..14844965 | 488..242 | 1235 | 100 | Minus |
| 2R | 25286936 | 2R | 14843708..14843949 | 1315..1074 | 1210 | 100 | Minus |
| 2R | 25286936 | 2R | 14845082..14845298 | 241..25 | 1085 | 100 | Minus |
| 2R | 25286936 | 2R | 14844020..14844154 | 1074..940 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:03:14 has no hits.
BO12118.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:45 Download gff for
BO12118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NaPi-T-RA | 1..1575 | 17..1591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:35 Download gff for
BO12118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NaPi-T-RA | 430..2009 | 9..1588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:33 Download gff for
BO12118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NaPi-T-RA | 438..2009 | 17..1590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:45 Download gff for
BO12118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NaPi-T-RA | 430..2009 | 9..1588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:37 Download gff for
BO12118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NaPi-T-RA | 438..2009 | 17..1590 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:37 Download gff for
BO12118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14844720..14844965 | 242..487 | 100 | <- | Minus |
| 2R | 14845082..14845298 | 25..241 | 100 | | Minus |
| 2R | 14843367..14843643 | 1316..1590 | 99 | <- | Minus |
| 2R | 14843708..14843949 | 1074..1315 | 100 | <- | Minus |
| 2R | 14844021..14844153 | 941..1073 | 100 | <- | Minus |
| 2R | 14844213..14844665 | 488..940 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:33 Download gff for
BO12118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10730872..10731148 | 1316..1590 | 99 | <- | Minus |
| arm_2R | 10731213..10731454 | 1074..1315 | 100 | <- | Minus |
| arm_2R | 10731526..10731658 | 941..1073 | 100 | <- | Minus |
| arm_2R | 10731718..10732170 | 488..940 | 100 | <- | Minus |
| arm_2R | 10732225..10732470 | 242..487 | 100 | <- | Minus |
| arm_2R | 10732587..10732803 | 25..241 | 100 | | Minus |
BO12118.pep Sequence
Translation from 16 to 1606
> BO12118.pep
MGQVEARTVLWYMTFIGFIVNYMIRINLNITIVDMIAGKGAITSNETHEN
STDLAALAEMNERFSLERWFLDWANIPYEKNGFHWNEKQQGALLGSFFWA
HWTLQIPGGILATKYGTKLVFGWSNGIGVFCCFLIPIVSYWSYTGLIILR
VFQGWITGLAWPSMHVLTAKWIPPNERSKFVSAYLGSSVGVALFYPIFGY
IIDWTRWEWVYYICGIVGTLWFIAWQFLVFDSPAEHPRIADSERKFIEKS
LGASIQGSKGPTPWKAIATSRPVWLNVVAQWGGIWGLFTLMTHAPTYFRL
IHHWNIRATGFLSGLPHLMRMLFAYVFSIFADYLLRTDKMSRTNVRKLAT
FICCGTKGLIVLALAYFGYNATAAIVLVTVATMLHGAVSSGPLASMVDLS
PNYAGIVLGVSGMIGGMPGFISPFIVGQLTHNNQTIDAWKNVFLLTSLML
TGSGILYVLFSESKLQPWNSGCHQLPDSGLKELQNLGRDQDDEEEKKPLK
SDHDKETPIVAEQETKTKSDCDEKASFLDH
BO12118.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NaPi-T-PB | 524 | CG10207-PB | 1..524 | 1..524 | 2821 | 100 | Plus |
| NaPi-T-PA | 524 | CG10207-PA | 1..524 | 1..524 | 2821 | 100 | Plus |
| CG3036-PB | 493 | CG3036-PB | 16..471 | 4..470 | 792 | 33.8 | Plus |
| CG3036-PA | 493 | CG3036-PA | 16..471 | 4..470 | 792 | 33.8 | Plus |
| CG9864-PB | 465 | CG9864-PB | 9..449 | 4..469 | 750 | 32.4 | Plus |
