Clone Sequence Records
BO12119.3prime Sequence
870 bp (776 high quality bases) assembled on 2006-04-20
> BO12119.3prime
ATGGTCTAGAAAGCTTGCTTGTATTAACTGTCTGCTGTGAAAGTCGGTTA
TGTTGCTCAGCTCGAGGGGCGTGCCCTTCAGCACCTGTGAGTTGGATTCC
TCAATGCGGACGGCCAAAAAGTCACCTACTCCAAACGATTTTCTGGCTGT
GGAATCTCCAGATATGGGTACATATATAGAAGGAACTATGACCTTGATAT
TGGCATCATTCCGACCGAACCAGTGAGCATCGGACCTCTTGCTTTTCCCT
TCTATAAGTATGAGCTGCTCCTGGCCTTCCATTTTACGATGTAGCTGTGT
AGCTCCCTCTCGGAAAACCTGGACCATGCGCTGCAGTCGCTCATTCTTCA
CGTTTATGGGCACATCATCTTTGTAGCGCCGATGGGCAGTGGTCTTTTCT
CGCATGCTGTAGGCGAACAAGTAGGCCACGTTGTACTGCACTTGTTGGAT
AAGAGATACAGTGTCTTGGAACTCCTCTTCCGTTTCACCGCAAAAGCCGC
AGATAAAATCGCTGGACAGACCCACGTTGGGCAAAAACTGTCTGATGTGC
TGCACAAGTTCCAGATAAGCCTCTCTGCTGTAACCACGTCGCATCCTTTC
CAGAACTTGGGTATTGCCCGATTGTGCTGGCAGGTGAAGTTGCTTGCACA
CATTCGGGTGATCTCTGATGACCTCCAGAACTTCGTCGGAGAAATCCTTC
GGATGCGGCGAGGTGAAACGGATGCGCATGTCTGGAACAGCTTGAGCCAC
GGATCGGAGCAATGCTGCAAAGGGAGTCCCGCCTGTTTTGGGCTTGTAAA
CAGTGCTAAAACCGGGCACTGGAGTTGCTTTCAGTGAGTCCTGTTCCTCC
TGCGCAGTTCTGTCTCTGTA
BO12119.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6345-PA | 1752 | CG6345-RA | 898..1749 | 870..19 | 4235 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:02:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6345-RA | 1829 | CG6345-RA | 960..1811 | 870..19 | 4245 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 05:02:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10414236..10415087 | 19..870 | 4245 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-01 05:02:45 has no hits.
BO12119.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:33 Download gff for
BO12119.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6345-PA | 899..1752 | 15..869 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:32 Download gff for
BO12119.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6345-PA | 899..1752 | 15..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:11:21 Download gff for
BO12119.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6345-RA | 961..1814 | 15..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:51:54 Download gff for
BO12119.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6345-RA | 961..1814 | 15..869 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:51:54 Download gff for
BO12119.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10414232..10415086 | 14..869 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:11:21 Download gff for
BO12119.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6239954..6240808 | 14..869 | 99 | | Plus |
BO12119.5prime Sequence
861 bp (790 high quality bases) assembled on 2006-04-20
> BO12119.5prime
GAAGTTATCAGTCGACATGAAAATAAGCTACCGGGCATTTGTTCGCCAAG
TGCGGCATGCCTCCACGACTGCCTCGAAAGGAGCTACGACATCCGTTACC
TCCAGCGCAGCGGGTCAACTAAAATCAGAGCCGGCAGCACGTGCAACTTT
TCTGGAGAGGATTCAACGCGGACCGGGCTTCCAAGACTTTTTTGCGGTCA
AGCCTGCGTCAAGACTGAAAACTGATGAAGAGGAGCATGTGGACACCAGT
GTGCCGTACCTGAACTCGATTGATTTCAATGGAAACGGAAGGAAGGTCCA
CTTTGAGGTCTACGGATGCCAGATGAACACGAATGACACGGAGGTGGTGT
TCAGTATCCTGAAGGAGAATGGTTATTTGAGATGCCAGGAGCCGGAGGAG
GCCGATGTCATAATGCTCGTAACGTGCGCAGTGCGCGATGGAGCGGAGCA
GAGGATCAGGAACCGATTGAAGCACCTGCGAGCCATGAAGAACAAACGCA
GTACGCGGAGGCATCCTCTACAGCTGACACTGCTGGGTTGCATGGCGGAG
CGACTAAAGGAGAAGCTGCTGGAACAGGAGCAATGTGTGGATGTAATCGC
CGGACCCGATAGCTACAAGGATTTGCCGCGACTACTGGCTATCTCCCGGC
ATTATGGCAACTCGGCCATCAATGTGCTCCTCTCGCTGGACGAAACCTAT
GCGGATGTGATGCCCGTTCGCTTAAACTCCGAATCGCCCACTGCTTTTGT
GTCCATCATGCGCGGTTGTGACAACATGTGTACCTATTGTATAGTGCCCT
TCACCCGTGGACGCGAGCGCTCTCGCCCCCTGGCATCCATTGTGGCTGAG
GTCAAGGCATT
BO12119.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6345-PA | 1752 | CG6345-RA | 1..845 | 17..861 | 4225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:54:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6345-RA | 1829 | CG6345-RA | 62..907 | 16..861 | 4230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:54:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10415140..10415985 | 861..16 | 4230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:54:27 has no hits.
BO12119.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:34 Download gff for
BO12119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6345-PA | 1..845 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:33 Download gff for
BO12119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6345-PA | 1..845 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:05:12 Download gff for
BO12119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6345-RA | 54..907 | 7..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:49:00 Download gff for
BO12119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6345-RA | 54..907 | 7..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:49:00 Download gff for
BO12119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10415140..10415993 | 7..861 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:05:12 Download gff for
BO12119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6240862..6241715 | 7..861 | 99 | | Minus |
BO12119.complete Sequence
1783 bp assembled on 2009-08-24
GenBank Submission: KX796994
> BO12119.complete
GAAGTTATCAGTCGACATGAAAATAAGCTACCGGGCATTTGTTCGCCAAG
TGCGGCATGCCTCCACGACTGCCTCGAAAGGAGCTACGACATCCGTTACC
TCCAGCGCAGCGGGTCAACTAAAATCAGAGCCGGCAGCACGTGCAACTTT
TCTGGAGAGGATTCAACGCGGACCGGGCTTCCAAGACTTTTTTGCGGTCA
AGCCTGCGTCAAGACTGAAAACTGATGAAGAGGAGCATGTGGACACCAGT
GTGCCGTACCTGAACTCGATTGATTTCAATGGAAACGGAAGGAAGGTCCA
CTTTGAGGTCTACGGATGCCAGATGAACACGAATGACACGGAGGTGGTGT
TCAGTATCCTGAAGGAGAATGGTTATTTGAGATGCCAGGAGCCGGAGGAG
GCCGATGTCATAATGCTCGTAACGTGCGCAGTGCGCGATGGAGCGGAGCA
GAGGATCAGGAACCGATTGAAGCACCTGCGAGCCATGAAGAACAAACGCA
GTACGCGGAGGCATCCTCTACAGCTGACACTGCTGGGTTGCATGGCGGAG
CGACTAAAGGAGAAGCTGCTGGAACAGGAGCAATGTGTGGATGTAATCGC
CGGACCCGATAGCTACAAGGATTTGCCGCGACTACTGGCTATCTCCCGGC
ATTATGGCAACTCGGCCATCAATGTGCTCCTCTCGCTGGACGAAACCTAT
GCGGATGTGATGCCCGTTCGCTTAAACTCCGAATCGCCCACTGCTTTTGT
GTCCATCATGCGCGGTTGTGACAACATGTGTACCTATTGTATAGTGCCCT
TCACCCGTGGACGCGAGCGCTCTCGCCCCCTGGCATCCATTGTGGCTGAG
GTCAAGGCATTGGCGGAACAGGGCGTGAAGGAGGTCACCCTGCTGGGTCA
GAATGTCAACTCGTACAGAGACAGAACTGCGCAGGAGGAACAGGACTCAC
TGAAAGCAACTCCAGTGCCCGGTTTTAGCACTGTTTACAAGCCCAAAACA
GGCGGGACTCCCTTTGCAGCATTGCTCCGATCCGTGGCTCAAGCTGTTCC
AGACATGCGCATCCGTTTCACCTCGCCGCATCCGAAGGATTTCTCCGACG
AAGTTCTGGAGGTCATCAGAGATCACCCGAATGTGTGCAAGCAACTTCAC
CTGCCAGCACAATCGGGCAATACCCAAGTTCTGGAAAGGATGCGACGTGG
TTACAGCAGAGAGGCTTATCTGGAACTTGTGCAGCACATCAGACAGTTTT
TGCCCAACGTGGGTCTGTCCAGCGATTTTATCTGCGGCTTTTGCGGTGAA
ACGGAAGAGGAGTTCCAAGACACTGTATCTCTTATCCAACAAGTGCAGTA
CAACGTGGCCTACTTGTTCGCCTACAGCATGCGAGAAAAGACCACTGCCC
ATCGGCGCTACAAAGATGATGTGCCCATAAACGTGAAGAATGAGCGACTG
CAGCGCATGGTCCAGGTTTTCCGAGAGGGAGCTACACAGCTACATCGTAA
AATGGAAGGCCAGGAGCAGCTCATACTTATAGAAGGGAAAAGCAAGAGGT
CCGATGCTCACTGGTTCGGTCGGAATGATGCCAATATCAAGGTCATAGTT
CCTTCTATATATGTACCCATATCTGGAGATTCCACAGCCAGAAAATCGTT
TGGAGTAGGTGACTTTTTGGCCGTCCGCATTGAGGAATCCAACTCACAGG
TGCTGAAGGGCACGCCCCTCGAGCTGAGCAACATAACCGACTTTCACAGC
AGACAGTTAATACAAGCAAGCTTTCTAGACCAT
BO12119.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:32:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6345-RA | 1752 | CG6345-PA | 1..1749 | 17..1765 | 8730 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6345-RA | 1829 | CG6345-RA | 62..1811 | 16..1765 | 8735 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10414236..10415985 | 1765..16 | 8735 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:32:40 has no hits.
BO12119.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:51 Download gff for
BO12119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6345-RA | 61..1809 | 17..1767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:38 Download gff for
BO12119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6345-RA | 63..1811 | 17..1767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:05 Download gff for
BO12119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6345-RA | 63..1811 | 17..1767 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:05 Download gff for
BO12119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10414234..10415984 | 17..1767 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:38 Download gff for
BO12119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6239956..6241706 | 17..1767 | 99 | | Minus |
BO12119.pep Sequence
Translation from 16 to 1783
> BO12119.pep
MKISYRAFVRQVRHASTTASKGATTSVTSSAAGQLKSEPAARATFLERIQ
RGPGFQDFFAVKPASRLKTDEEEHVDTSVPYLNSIDFNGNGRKVHFEVYG
CQMNTNDTEVVFSILKENGYLRCQEPEEADVIMLVTCAVRDGAEQRIRNR
LKHLRAMKNKRSTRRHPLQLTLLGCMAERLKEKLLEQEQCVDVIAGPDSY
KDLPRLLAISRHYGNSAINVLLSLDETYADVMPVRLNSESPTAFVSIMRG
CDNMCTYCIVPFTRGRERSRPLASIVAEVKALAEQGVKEVTLLGQNVNSY
RDRTAQEEQDSLKATPVPGFSTVYKPKTGGTPFAALLRSVAQAVPDMRIR
FTSPHPKDFSDEVLEVIRDHPNVCKQLHLPAQSGNTQVLERMRRGYSREA
YLELVQHIRQFLPNVGLSSDFICGFCGETEEEFQDTVSLIQQVQYNVAYL
FAYSMREKTTAHRRYKDDVPINVKNERLQRMVQVFREGATQLHRKMEGQE
QLILIEGKSKRSDAHWFGRNDANIKVIVPSIYVPISGDSTARKSFGVGDF
LAVRIEESNSQVLKGTPLELSNITDFHSRQLIQASFLDH
BO12119.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:46:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6345-PA | 583 | CG6345-PA | 1..583 | 1..583 | 2993 | 100 | Plus |
| CG6550-PA | 552 | CG6550-PA | 42..472 | 62..529 | 339 | 23.2 | Plus |
