Clone Sequence Records
BO12121.3prime Sequence
686 bp (685 high quality bases) assembled on 2006-04-20
> BO12121.3prime
ATGGTCTAGAAAGCTTGCGCAGAGCGTTCCGGGCAGCTGACTGAAGCTCT
GGCAAAGCAAGGCGTGCAGAAGATCATCGTCCACCCGATCCTGGGTGTTG
GCCCAGAAGAAGGTGCCATTGTCCGTGCTGATGTATTGGAGGGGCAACTG
CAGATCCCAGAGATTACTGGGCAACTGTGTTGCACTGCTGCTGTTCATAT
TGCTGCTGCTGCTGCTACTGTTGATGTTGCTGCTGCTGTGATGTCGATGC
TGGCAGTTGCGTCCGTGTTGGCAGTTGCCGCAGCTCTGGGCGCTGACCTT
GTCCACATGCACGCTGCTAATCAATGTGGGTGTGTTGGGCGGCTGGGTGA
GGGACACCTGCTCCTCCTCGGGCAATTGCCTCAGCTCCAGACCGTACTTG
TGGATAGACTCCTCTGGCGTTGACTTGGTGTCATCTTCAATGAGCAACTC
CTGCTGCTGCTGCTGTTGCTGCTGCTGTGTGTTGTTGAGATCCACGTTGT
TGGGATGGGCCAAGGTCGCCTGTGCGGTGCGACCTTTGCCACCCACTTTC
AGTAGGCGACTCAGCGGTTTCCACACGTTACGCATGCGCCGTGTTGACTT
TGAGTTCGATGCTGTGGCCGCTGTCAGTGCTGAAGTGCTGCTGGCTGTCA
GGTTTTTCGTATCCAGATACATGTCGACTGATAACT
BO12121.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6104-PA | 657 | m2-RA | 1..654 | 672..19 | 3245 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:57:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E(spl)m2-BFM-RA | 957 | CG6104-RA | 107..762 | 674..19 | 3265 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:57:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26016709..26017364 | 19..674 | 3265 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:57:10 has no hits.
BO12121.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:26:37 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:37 Download gff for
BO12121.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6104-PA | 1..657 | 18..672 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:57:29 Download gff for
BO12121.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)m2-BFM-RA | 102..767 | 11..680 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:00 Download gff for
BO12121.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)m2-BFM-RA | 102..767 | 11..680 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:00 Download gff for
BO12121.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26016704..26017369 | 11..680 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:57:29 Download gff for
BO12121.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21842426..21843091 | 11..680 | 98 | | Plus |
BO12121.5prime Sequence
686 bp (685 high quality bases) assembled on 2006-04-20
> BO12121.5prime
GAAGTTATCAGTCGACATGTATCTGGATACGAAAAACCTGACAGCCAGCA
GCACTTCAGCACTGACAGCGGCCACAGCATCGAACTCAAAGTCAACACGG
CGCATGCGTAACGTGTGGAAACCGCTGAGTCGCCTACTGAAAGTGGGTGG
CAAAGGTCGCACCGCACAGGCGACCTTGGCCCATCCCAACAACGTGGATC
TCAACAACACACAGCAGCAGCAACAGCAGCAGCAGCAGGAGTTGCTCATT
GAAGATGACACCAAGTCAACGCCAGAGGAGTCTATCCACAAGTACGGTCT
GGAGCTGAGGCAATTGCCCGAGGAGGAGCAGGTGTCCCTCACCCAGCCGC
CCAACACACCCACATTGATTAGCAGCGTGCATGTGGACAAGGTCAGCGCC
CAGAGCTGCGGCAACTGCCAACACGGACGCAACTGCCAGCATCGACATCA
CAGCAGCAGCAACATCAACAGTAGCAGCAGCAGCAGCAATATGAACAGCA
GCAGTGCAACACAGTTGCCCAGTAATCTCTGGGATCTGCAGTTGCCCCTC
CAATACATCAGCACGGACAATGGCACCTTCTTCTGGGCCAACACCCAGGA
TCGGGTGGACGATGATCTTCTGCACGCCTTGCTTTGCCAGAGCTTCAGTC
AGCTGCCCGGAACGCTCTGCGCAAGCTTTCTAGACC
BO12121.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6104-PA | 657 | m2-RA | 1..654 | 17..670 | 3245 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:33:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E(spl)m2-BFM-RA | 957 | CG6104-RA | 107..762 | 15..670 | 3265 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:33:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26016709..26017364 | 670..15 | 3265 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:33:15 has no hits.
BO12121.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:26:38 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:39 Download gff for
BO12121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6104-PA | 1..657 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:50:19 Download gff for
BO12121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)m2-BFM-RA | 102..767 | 9..678 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:12 Download gff for
BO12121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)m2-BFM-RA | 102..767 | 9..678 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:12 Download gff for
BO12121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26016704..26017369 | 9..678 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:50:19 Download gff for
BO12121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21842426..21843091 | 9..678 | 98 | | Minus |
BO12121.complete Sequence
688 bp assembled on 2006-10-11
GenBank Submission: FJ632318
> BO12121.complete
GAAGTTATCAGTCGACATGTATCTGGATACGAAAAACCTGACAGCCAGCA
GCACTTCAGCACTGACAGCGGCCACAGCATCGAACTCAAAGTCAACACGG
CGCATGCGTAACGTGTGGAAACCGCTGAGTCGCCTACTGAAAGTGGGTGG
CAAAGGTCGCACCGCACAGGCGACCTTGGCCCATCCCAACAACGTGGATC
TCAACAACACACAGCAGCAGCAACAGCAGCAGCAGCAGGAGTTGCTCATT
GAAGATGACACCAAGTCAACGCCAGAGGAGTCTATCCACAAGTACGGTCT
GGAGCTGAGGCAATTGCCCGAGGAGGAGCAGGTGTCCCTCACCCAGCCGC
CCAACACACCCACATTGATTAGCAGCGTGCATGTGGACAAGGTCAGCGCC
CAGAGCTGCGGCAACTGCCAACACGGACGCAACTGCCAGCATCGACATCA
CAGCAGCAGCAACATCAACAGTAGCAGCAGCAGCAGCAATATGAACAGCA
GCAGTGCAACACAGTTGCCCAGTAATCTCTGGGATCTGCAGTTGCCCCTC
CAATACATCAGCACGGACAATGGCACCTTCTTCTGGGCCAACACCCAGGA
TCGGGTGGACGATGATCTTCTGCACGCCTTGCTTTGCCAGAGCTTCAGTC
AGCTGCCCGGAACGCTCTGCGCAAGCTTTCTAGACCAT
BO12121.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:43:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E(spl)m2-BFM-RA | 657 | CG6104-PA | 1..654 | 17..670 | 3255 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:43:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E(spl)m2-BFM-RA | 957 | CG6104-RA | 107..762 | 15..670 | 3265 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:43:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26016709..26017364 | 670..15 | 3265 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:43:10 has no hits.
BO12121.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:59 Download gff for
BO12121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| m2-RA | 1..657 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:18 Download gff for
BO12121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| m2-RA | 102..767 | 9..678 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:12 Download gff for
BO12121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)m2-BFM-RA | 109..762 | 17..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:59 Download gff for
BO12121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| m2-RA | 102..767 | 9..678 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:46 Download gff for
BO12121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)m2-BFM-RA | 109..762 | 17..672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:46 Download gff for
BO12121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26016707..26017362 | 17..672 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:12 Download gff for
BO12121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21842429..21843084 | 17..672 | 99 | | Minus |
BO12121.pep Sequence
Translation from 16 to 688
> BO12121.pep
MYLDTKNLTASSTSALTAATASNSKSTRRMRNVWKPLSRLLKVGGKGRTA
QATLAHPNNVDLNNTQQQQQQQQQELLIEDDTKSTPEESIHKYGLELRQL
PEEEQVSLTQPPNTPTLISSVHVDKVSAQSCGNCQHGRNCQHRHHSSSNI
NSSSSSSNMNSSSATQLPSNLWDLQLPLQYISTDNGTFFWANTQDRVDDD
LLHALLCQSFSQLPGTLCASFLDH
BO12121.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:18:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E(spl)m2-BFM-PA | 218 | CG6104-PA | 1..218 | 1..218 | 1136 | 100 | Plus |
