Clone BO12122 Report

Search the DGRC for BO12122

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG14044-RA
Protein status:BO12122.pep: validated full length
Sequenced Size:1168

Clone Sequence Records

BO12122.3prime Sequence

650 bp (626 high quality bases) assembled on 2006-04-20

> BO12122.3prime
ATGGTCTAGAAAGCTTGCCTTGCGCACCGTGTTGAAGACCTCCTCGCGAT
GATCCCGGAGCGTCTTGGCCAGCCCGCATACAGTTTCCTCCGCCCTGTCG
TAGTCTGGGCGCAGCGTGCTGTTAAAGGTTTCGTAGAGCCACGTGCAGGT
TTTGGACATGTTTGATTCGTAACTGGTGAAGACCCGACTGGTGTGCTCGT
ACCGCGCTTTGTTTGCTATATCCGTGATTAGGTAGGTGTTGCAGTGCTTG
ACGGCTAGGACTTGCCGATGACTCATGTACTTGAGTTCCACGTGCGGCAG
AGCCAGCTGAGCCGCCTCTAGGGATATCGTGGAGGCGTGTAACAGACTTC
GACAGTCCAACGCCCACTGAAGCTTTTGCTTGGGATCTATTATCCGTCCA
AGCTGTCGCCATTGTTTTAATGCCTGCGTCGAGGAATTCGCGGCTGCTCT
AAGTAGTAATCCACAGATGCGCCACTGCTCCAGTGCGCTGCCCAGCTTAT
CCCTTGTATCTCTTGCCGTCTCAAGCTGCTCATCAATGCTCTCCTCCAGC
CGAGTCATGTACGTTCCCCCGCTTATATACGCTATAATCCCGTCTTGCTT
TACGTACAGCTCGTTCAGCTCTGCATAGCTCTCGGCCAGAGTCTTTAGAC

BO12122.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14044-PA 1137 CG14044-RA 503..1134 650..19 3160 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14044-RA 1318 CG14044-RA 613..1244 650..19 3160 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4943487..4943748 650..389 1310 100 Minus
2L 23513712 2L 4943803..4943991 388..200 945 100 Minus
2L 23513712 2L 4944047..4944231 203..19 925 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:38:27 has no hits.

BO12122.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:39 Download gff for BO12122.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14044-PA 503..1137 16..650 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:40 Download gff for BO12122.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14044-PA 503..1137 16..650 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:07:05 Download gff for BO12122.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14044-RA 613..1244 19..650 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:19:31 Download gff for BO12122.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14044-RA 613..1244 19..650 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:31 Download gff for BO12122.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4943487..4943748 389..650 100 -> Minus
2L 4943803..4943988 203..388 100 -> Minus
2L 4944048..4944231 19..202 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:07:05 Download gff for BO12122.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4943487..4943748 389..650 100 -> Minus
arm_2L 4943803..4943988 203..388 100 -> Minus
arm_2L 4944048..4944231 19..202 100   Minus

BO12122.5prime Sequence

951 bp (790 high quality bases) assembled on 2006-04-20

> BO12122.5prime
GAAGTTATCAGTCGACATGGGCTGTGGCTCCTCCATGGATACGCAGACGA
ATCCTGTCGTCACGGAGGTCAGCTCGGAAATGCAACCTCGCCAGAATGGC
GCCTCTGGAAATGTGGTCGAGCAATATGTGCGCCTGGACGAGCAGATCAG
CAAGCTGGAGGGCACATGTCCTGGTCCTCGAATGGCCACCGCCGAGGCCT
GGGTGGAGCACATTCAGAGCAAGCACGAGGCGATGCTGGGACTCGATGGC
ATGGGAGTGTCTCCTTTGCGCGAGAGGGAATGGGAAACCGAGGAGGCCCT
GCCCATTCCAGCTTACACAATGGGGGGGCGGCAGGGCGACCCAATTGTGG
CCAACACGCCCACCAAGGACCTGGCCCAGCTTGCCTACAACCTGGGCGTA
ATTGGCGATGCCCGCAAGGCTTCCATGCACGAGGATTTCTTCGCCAACCT
GAGCGAGTCCGCCATGTATTTGCTTAGCATTCGTTACTACGGCGAGATGT
TGGAACACACTAAGGTGCGTCTAAAGACTCTGGCCGAGAGCTATGCAGAG
CTGAACGAGCTGTACGTAAAGCAAGACGGGATTATAGCGTATATAAGCGG
GGGAACGTACATGACTCGGCTGGAGGAGAGCATTGATGAGCAGCTTGAGA
CGGCAAGAGATACAAGGGATAAGCTGGGCAGCGCACTGGAGCAGTGGCGC
ATCTGTGGATTACTACTTAGAGCAGCCGCGAATTCCTCGACGCAGGCATT
AAAACAATGGCGACAGCTTGGACGGATAATAGATCCCAAGCAAAAGCTTC
AGTGGGCGTTGGACTGTCGAAGTCTGTTACACGCCTCCACGATATCCCTA
GAGGCGGCTCAGCTGGCTCTGCCGCACGTGGAAACTCAGTACATGAGTCA
TCGGCAAAGTCTAGCCGTCAAGCACTGCAACACCTACCTAATCACGGATA
T

BO12122.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG14044-PA 1137 CG14044-RA 1..867 17..883 4335 100 Plus
CG14044-PA 1137 CG14044-RA 895..935 911..951 205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG14044-RA 1318 CG14044-RA 111..1045 17..951 4585 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4943346..4943748 378..780 2015 100 Plus
2L 23513712 2L 4943011..4943280 110..379 1350 100 Plus
2L 23513712 2L 4943803..4943973 781..951 750 95.9 Plus
2L 23513712 2L 4942852..4942944 17..109 465 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:55:13 has no hits.

BO12122.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:40 Download gff for BO12122.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14044-PA 1..935 17..951 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:41 Download gff for BO12122.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14044-PA 1..935 17..951 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:03:44 Download gff for BO12122.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14044-RA 107..1045 10..951 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:56 Download gff for BO12122.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14044-RA 107..1045 10..951 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:56 Download gff for BO12122.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4942848..4942944 10..109 97 -> Plus
2L 4943011..4943280 110..379 100 -> Plus
2L 4943348..4943748 380..780 100 -> Plus
2L 4943803..4943973 781..951 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:03:44 Download gff for BO12122.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4942848..4942944 10..109 97 -> Plus
arm_2L 4943011..4943280 110..379 100 -> Plus
arm_2L 4943348..4943748 380..780 100 -> Plus
arm_2L 4943803..4943973 781..951 97   Plus

BO12122.complete Sequence

1168 bp assembled on 2006-10-11

GenBank Submission: FJ632319

> BO12122.complete
GAAGTTATCAGTCGACATGGGCTGTGGCTCCTCCATGGATACGCAGACGA
ATCCTGTCGTCACGGAGGTCAGCTCGGAAATGCAACCTCGCCAGAATGGC
GCCTCTGGAAATGTGGTCGAGCAATATGTGCGCCTGGACGAGCAGATCAG
CAAGCTGGAGGGCACATGTCCTGGTCCTCGAATGGCCACCGCCGAGGCCT
GGGTGGAGCACATTCAGAGCAAGCACGAGGCGATGCTGGGACTCGATGGC
ATGGGAGTGTCTCCTTTGCGCGAGAGGGAATGGGAAACCGAGGAGGCCCT
GCCCATTCCAGCTTACACAATGGGGGGGCGGCAGGGCGACCCAATTGTGG
CCAACACGCCCACCAAGGACCTGGCCCAGCTTGCCTACAACCTGGGCGTA
ATTGGCGATGCCCGCAAGGCTTCCATGCACGAGGATTTCTTCGCCAACCT
GAGCGAGTCCGCCATGTATTTGCTTAGCATTCGTTACTACGGCGAGATGT
TGGAACACACTAAGGTGCGTCTAAAGACTCTGGCCGAGAGCTATGCAGAG
CTGAACGAGCTGTACGTAAAGCAAGACGGGATTATAGCGTATATAAGCGG
GGGAACGTACATGACTCGGCTGGAGGAGAGCATTGATGAGCAGCTTGAGA
CGGCAAGAGATACAAGGGATAAGCTGGGCAGCGCACTGGAGCAGTGGCGC
ATCTGTGGATTACTACTTAGAGCAGCCGCGAATTCCTCGACGCAGGCATT
AAAACAATGGCGACAGCTTGGACGGATAATAGATCCCAAGCAAAAGCTTC
AGTGGGCGTTGGACTGTCGAAGTCTGTTACACGCCTCCACGATATCCCTA
GAGGCGGCTCAGCTGGCTCTGCCGCACGTGGAACTCAAGTACATGAGTCA
TCGGCAAGTCCTAGCCGTCAAGCACTGCAACACCTACCTAATCACGGATA
TAGCAAACAAAGCGCGGTACGAGCACACCAGTCGGGTCTTCACCAGTTAC
GAATCAAACATGTCCAAAACCTGCACGTGGCTCTACGAAACCTTTAACAG
CACGCTGCGCCCAGACTACGACAGGGCGGAGGAAACTGTATGCGGGCTGG
CCAAGACGCTCCGGGATCATCGCGAGGAGGTCTTCAACACGGTGCGCAAG
GCAAGCTTTCTAGACCAT

BO12122.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG14044-RA 1137 CG14044-PA 1..1134 17..1150 5670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG14044-RA 1318 CG14044-RA 111..1244 17..1150 5670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4943346..4943748 378..780 2015 100 Plus
2L 23513712 2L 4943011..4943280 110..379 1350 100 Plus
2L 23513712 2L 4943803..4943991 781..969 945 100 Plus
2L 23513712 2L 4944047..4944231 966..1150 925 100 Plus
2L 23513712 2L 4942852..4942944 17..109 465 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:25:18 has no hits.

BO12122.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:49 Download gff for BO12122.complete
Subject Subject Range Query Range Percent Splice Strand
CG14044-RA 1..1137 17..1153 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:36 Download gff for BO12122.complete
Subject Subject Range Query Range Percent Splice Strand
CG14044-RA 101..1238 10..1150 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:57:26 Download gff for BO12122.complete
Subject Subject Range Query Range Percent Splice Strand
CG14044-RA 111..1244 17..1152 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:49 Download gff for BO12122.complete
Subject Subject Range Query Range Percent Splice Strand
CG14044-RA 101..1238 10..1150 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:00:27 Download gff for BO12122.complete
Subject Subject Range Query Range Percent Splice Strand
CG14044-RA 111..1244 17..1152 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:00:27 Download gff for BO12122.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4942852..4942944 17..109 100 -> Plus
2L 4943011..4943280 110..379 100 -> Plus
2L 4943348..4943748 380..780 100 -> Plus
2L 4943803..4943988 781..966 100 -> Plus
2L 4944048..4944231 967..1152 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:57:26 Download gff for BO12122.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4942852..4942944 17..109 100 -> Plus
arm_2L 4943011..4943280 110..379 100 -> Plus
arm_2L 4943348..4943748 380..780 100 -> Plus
arm_2L 4943803..4943988 781..966 100 -> Plus
arm_2L 4944048..4944231 967..1152 98   Plus

BO12122.pep Sequence

Translation from 16 to 1168

> BO12122.pep
MGCGSSMDTQTNPVVTEVSSEMQPRQNGASGNVVEQYVRLDEQISKLEGT
CPGPRMATAEAWVEHIQSKHEAMLGLDGMGVSPLREREWETEEALPIPAY
TMGGRQGDPIVANTPTKDLAQLAYNLGVIGDARKASMHEDFFANLSESAM
YLLSIRYYGEMLEHTKVRLKTLAESYAELNELYVKQDGIIAYISGGTYMT
RLEESIDEQLETARDTRDKLGSALEQWRICGLLLRAAANSSTQALKQWRQ
LGRIIDPKQKLQWALDCRSLLHASTISLEAAQLALPHVELKYMSHRQVLA
VKHCNTYLITDIANKARYEHTSRVFTSYESNMSKTCTWLYETFNSTLRPD
YDRAEETVCGLAKTLRDHREEVFNTVRKASFLDH

BO12122.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG14044-PA 378 CG14044-PA 1..378 1..378 1962 100 Plus