Clone Sequence Records
BO12122.3prime Sequence
650 bp (626 high quality bases) assembled on 2006-04-20
> BO12122.3prime
ATGGTCTAGAAAGCTTGCCTTGCGCACCGTGTTGAAGACCTCCTCGCGAT
GATCCCGGAGCGTCTTGGCCAGCCCGCATACAGTTTCCTCCGCCCTGTCG
TAGTCTGGGCGCAGCGTGCTGTTAAAGGTTTCGTAGAGCCACGTGCAGGT
TTTGGACATGTTTGATTCGTAACTGGTGAAGACCCGACTGGTGTGCTCGT
ACCGCGCTTTGTTTGCTATATCCGTGATTAGGTAGGTGTTGCAGTGCTTG
ACGGCTAGGACTTGCCGATGACTCATGTACTTGAGTTCCACGTGCGGCAG
AGCCAGCTGAGCCGCCTCTAGGGATATCGTGGAGGCGTGTAACAGACTTC
GACAGTCCAACGCCCACTGAAGCTTTTGCTTGGGATCTATTATCCGTCCA
AGCTGTCGCCATTGTTTTAATGCCTGCGTCGAGGAATTCGCGGCTGCTCT
AAGTAGTAATCCACAGATGCGCCACTGCTCCAGTGCGCTGCCCAGCTTAT
CCCTTGTATCTCTTGCCGTCTCAAGCTGCTCATCAATGCTCTCCTCCAGC
CGAGTCATGTACGTTCCCCCGCTTATATACGCTATAATCCCGTCTTGCTT
TACGTACAGCTCGTTCAGCTCTGCATAGCTCTCGGCCAGAGTCTTTAGAC
BO12122.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14044-PA | 1137 | CG14044-RA | 503..1134 | 650..19 | 3160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:38:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14044-RA | 1318 | CG14044-RA | 613..1244 | 650..19 | 3160 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:38:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4943487..4943748 | 650..389 | 1310 | 100 | Minus |
2L | 23513712 | 2L | 4943803..4943991 | 388..200 | 945 | 100 | Minus |
2L | 23513712 | 2L | 4944047..4944231 | 203..19 | 925 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:38:27 has no hits.
BO12122.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:39 Download gff for
BO12122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14044-PA | 503..1137 | 16..650 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:40 Download gff for
BO12122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14044-PA | 503..1137 | 16..650 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:07:05 Download gff for
BO12122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14044-RA | 613..1244 | 19..650 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:19:31 Download gff for
BO12122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14044-RA | 613..1244 | 19..650 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:31 Download gff for
BO12122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4943487..4943748 | 389..650 | 100 | -> | Minus |
2L | 4943803..4943988 | 203..388 | 100 | -> | Minus |
2L | 4944048..4944231 | 19..202 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:07:05 Download gff for
BO12122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4943487..4943748 | 389..650 | 100 | -> | Minus |
arm_2L | 4943803..4943988 | 203..388 | 100 | -> | Minus |
arm_2L | 4944048..4944231 | 19..202 | 100 | | Minus |
BO12122.5prime Sequence
951 bp (790 high quality bases) assembled on 2006-04-20
> BO12122.5prime
GAAGTTATCAGTCGACATGGGCTGTGGCTCCTCCATGGATACGCAGACGA
ATCCTGTCGTCACGGAGGTCAGCTCGGAAATGCAACCTCGCCAGAATGGC
GCCTCTGGAAATGTGGTCGAGCAATATGTGCGCCTGGACGAGCAGATCAG
CAAGCTGGAGGGCACATGTCCTGGTCCTCGAATGGCCACCGCCGAGGCCT
GGGTGGAGCACATTCAGAGCAAGCACGAGGCGATGCTGGGACTCGATGGC
ATGGGAGTGTCTCCTTTGCGCGAGAGGGAATGGGAAACCGAGGAGGCCCT
GCCCATTCCAGCTTACACAATGGGGGGGCGGCAGGGCGACCCAATTGTGG
CCAACACGCCCACCAAGGACCTGGCCCAGCTTGCCTACAACCTGGGCGTA
ATTGGCGATGCCCGCAAGGCTTCCATGCACGAGGATTTCTTCGCCAACCT
GAGCGAGTCCGCCATGTATTTGCTTAGCATTCGTTACTACGGCGAGATGT
TGGAACACACTAAGGTGCGTCTAAAGACTCTGGCCGAGAGCTATGCAGAG
CTGAACGAGCTGTACGTAAAGCAAGACGGGATTATAGCGTATATAAGCGG
GGGAACGTACATGACTCGGCTGGAGGAGAGCATTGATGAGCAGCTTGAGA
CGGCAAGAGATACAAGGGATAAGCTGGGCAGCGCACTGGAGCAGTGGCGC
ATCTGTGGATTACTACTTAGAGCAGCCGCGAATTCCTCGACGCAGGCATT
AAAACAATGGCGACAGCTTGGACGGATAATAGATCCCAAGCAAAAGCTTC
AGTGGGCGTTGGACTGTCGAAGTCTGTTACACGCCTCCACGATATCCCTA
GAGGCGGCTCAGCTGGCTCTGCCGCACGTGGAAACTCAGTACATGAGTCA
TCGGCAAAGTCTAGCCGTCAAGCACTGCAACACCTACCTAATCACGGATA
T
BO12122.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14044-PA | 1137 | CG14044-RA | 1..867 | 17..883 | 4335 | 100 | Plus |
CG14044-PA | 1137 | CG14044-RA | 895..935 | 911..951 | 205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:55:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14044-RA | 1318 | CG14044-RA | 111..1045 | 17..951 | 4585 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:55:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4943346..4943748 | 378..780 | 2015 | 100 | Plus |
2L | 23513712 | 2L | 4943011..4943280 | 110..379 | 1350 | 100 | Plus |
2L | 23513712 | 2L | 4943803..4943973 | 781..951 | 750 | 95.9 | Plus |
2L | 23513712 | 2L | 4942852..4942944 | 17..109 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:55:13 has no hits.
BO12122.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:40 Download gff for
BO12122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14044-PA | 1..935 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:41 Download gff for
BO12122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14044-PA | 1..935 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:03:44 Download gff for
BO12122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14044-RA | 107..1045 | 10..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:56 Download gff for
BO12122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14044-RA | 107..1045 | 10..951 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:56 Download gff for
BO12122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4942848..4942944 | 10..109 | 97 | -> | Plus |
2L | 4943011..4943280 | 110..379 | 100 | -> | Plus |
2L | 4943348..4943748 | 380..780 | 100 | -> | Plus |
2L | 4943803..4943973 | 781..951 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:03:44 Download gff for
BO12122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4942848..4942944 | 10..109 | 97 | -> | Plus |
arm_2L | 4943011..4943280 | 110..379 | 100 | -> | Plus |
arm_2L | 4943348..4943748 | 380..780 | 100 | -> | Plus |
arm_2L | 4943803..4943973 | 781..951 | 97 | | Plus |
BO12122.complete Sequence
1168 bp assembled on 2006-10-11
GenBank Submission: FJ632319
> BO12122.complete
GAAGTTATCAGTCGACATGGGCTGTGGCTCCTCCATGGATACGCAGACGA
ATCCTGTCGTCACGGAGGTCAGCTCGGAAATGCAACCTCGCCAGAATGGC
GCCTCTGGAAATGTGGTCGAGCAATATGTGCGCCTGGACGAGCAGATCAG
CAAGCTGGAGGGCACATGTCCTGGTCCTCGAATGGCCACCGCCGAGGCCT
GGGTGGAGCACATTCAGAGCAAGCACGAGGCGATGCTGGGACTCGATGGC
ATGGGAGTGTCTCCTTTGCGCGAGAGGGAATGGGAAACCGAGGAGGCCCT
GCCCATTCCAGCTTACACAATGGGGGGGCGGCAGGGCGACCCAATTGTGG
CCAACACGCCCACCAAGGACCTGGCCCAGCTTGCCTACAACCTGGGCGTA
ATTGGCGATGCCCGCAAGGCTTCCATGCACGAGGATTTCTTCGCCAACCT
GAGCGAGTCCGCCATGTATTTGCTTAGCATTCGTTACTACGGCGAGATGT
TGGAACACACTAAGGTGCGTCTAAAGACTCTGGCCGAGAGCTATGCAGAG
CTGAACGAGCTGTACGTAAAGCAAGACGGGATTATAGCGTATATAAGCGG
GGGAACGTACATGACTCGGCTGGAGGAGAGCATTGATGAGCAGCTTGAGA
CGGCAAGAGATACAAGGGATAAGCTGGGCAGCGCACTGGAGCAGTGGCGC
ATCTGTGGATTACTACTTAGAGCAGCCGCGAATTCCTCGACGCAGGCATT
AAAACAATGGCGACAGCTTGGACGGATAATAGATCCCAAGCAAAAGCTTC
AGTGGGCGTTGGACTGTCGAAGTCTGTTACACGCCTCCACGATATCCCTA
GAGGCGGCTCAGCTGGCTCTGCCGCACGTGGAACTCAAGTACATGAGTCA
TCGGCAAGTCCTAGCCGTCAAGCACTGCAACACCTACCTAATCACGGATA
TAGCAAACAAAGCGCGGTACGAGCACACCAGTCGGGTCTTCACCAGTTAC
GAATCAAACATGTCCAAAACCTGCACGTGGCTCTACGAAACCTTTAACAG
CACGCTGCGCCCAGACTACGACAGGGCGGAGGAAACTGTATGCGGGCTGG
CCAAGACGCTCCGGGATCATCGCGAGGAGGTCTTCAACACGGTGCGCAAG
GCAAGCTTTCTAGACCAT
BO12122.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:25:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14044-RA | 1137 | CG14044-PA | 1..1134 | 17..1150 | 5670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:25:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14044-RA | 1318 | CG14044-RA | 111..1244 | 17..1150 | 5670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:25:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4943346..4943748 | 378..780 | 2015 | 100 | Plus |
2L | 23513712 | 2L | 4943011..4943280 | 110..379 | 1350 | 100 | Plus |
2L | 23513712 | 2L | 4943803..4943991 | 781..969 | 945 | 100 | Plus |
2L | 23513712 | 2L | 4944047..4944231 | 966..1150 | 925 | 100 | Plus |
2L | 23513712 | 2L | 4942852..4942944 | 17..109 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:25:18 has no hits.
BO12122.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:49 Download gff for
BO12122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14044-RA | 1..1137 | 17..1153 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:36 Download gff for
BO12122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14044-RA | 101..1238 | 10..1150 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:57:26 Download gff for
BO12122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14044-RA | 111..1244 | 17..1152 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:49 Download gff for
BO12122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14044-RA | 101..1238 | 10..1150 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:00:27 Download gff for
BO12122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14044-RA | 111..1244 | 17..1152 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:00:27 Download gff for
BO12122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4942852..4942944 | 17..109 | 100 | -> | Plus |
2L | 4943011..4943280 | 110..379 | 100 | -> | Plus |
2L | 4943348..4943748 | 380..780 | 100 | -> | Plus |
2L | 4943803..4943988 | 781..966 | 100 | -> | Plus |
2L | 4944048..4944231 | 967..1152 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:57:26 Download gff for
BO12122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4942852..4942944 | 17..109 | 100 | -> | Plus |
arm_2L | 4943011..4943280 | 110..379 | 100 | -> | Plus |
arm_2L | 4943348..4943748 | 380..780 | 100 | -> | Plus |
arm_2L | 4943803..4943988 | 781..966 | 100 | -> | Plus |
arm_2L | 4944048..4944231 | 967..1152 | 98 | | Plus |
BO12122.pep Sequence
Translation from 16 to 1168
> BO12122.pep
MGCGSSMDTQTNPVVTEVSSEMQPRQNGASGNVVEQYVRLDEQISKLEGT
CPGPRMATAEAWVEHIQSKHEAMLGLDGMGVSPLREREWETEEALPIPAY
TMGGRQGDPIVANTPTKDLAQLAYNLGVIGDARKASMHEDFFANLSESAM
YLLSIRYYGEMLEHTKVRLKTLAESYAELNELYVKQDGIIAYISGGTYMT
RLEESIDEQLETARDTRDKLGSALEQWRICGLLLRAAANSSTQALKQWRQ
LGRIIDPKQKLQWALDCRSLLHASTISLEAAQLALPHVELKYMSHRQVLA
VKHCNTYLITDIANKARYEHTSRVFTSYESNMSKTCTWLYETFNSTLRPD
YDRAEETVCGLAKTLRDHREEVFNTVRKASFLDH
BO12122.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14044-PA | 378 | CG14044-PA | 1..378 | 1..378 | 1962 | 100 | Plus |