Clone BO12130 Report

Search the DGRC for BO12130

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:30
Vector:pDNR-Dual
Associated Gene/Transcriptpxb-RA
Protein status:BO12130.pep: validated full length
Sequenced Size:322

Clone Sequence Records

BO12130.3prime Sequence

320 bp (319 high quality bases) assembled on 2006-04-20

> BO12130.3prime
ATGGTCTAGAAAGCTTGCATATTGGAGAATTTTTCGAGTTTTTATAATGG
GCTTATCATATTTTGGGTAGATTTTCCCACTTACCGGCATTGCCTGGCAG
ACATCGCTCTCCCATTGCTGCTGGGCCAATTGCTCCTCGTTGCAATCCTG
CGGCACCACCGTGAATTCGGCCAGGGCCGGCGGTCTTGGTGGCGGTGGGA
TGAGGAACTGGGGCGGTGGGGCAAGGGGCGTGCCCGAGCAATCGTCGCAG
TCGAACATGAAGAGCTCTGCTTCGGACAGTTCCATCATATCCAGCATTTT
CCACATGTCGACTGATAACT

BO12130.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG33207-PA 291 pxb-RA 1..288 306..19 1440 100 Minus
CG33207-PB 1911 pxb-RB 1..222 306..85 1110 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:14:10
Subject Length Description Subject Range Query Range Score Percent Strand
pxb-RC 5086 CG33207-RC 599..820 306..85 1110 100 Minus
pxb-RB 3024 CG33207-RB 599..820 306..85 1110 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:14:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15671959..15672246 306..19 1440 100 Minus
Blast to na_te.dros performed on 2015-02-13 14:14:09 has no hits.

BO12130.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:53 Download gff for BO12130.3prime
Subject Subject Range Query Range Percent Splice Strand
pxb-PA 1..291 15..306 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:02 Download gff for BO12130.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33207-PA 1..291 15..306 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 03:03:20 Download gff for BO12130.3prime
Subject Subject Range Query Range Percent Splice Strand
pxb-RB 596..827 77..311 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:02:14 Download gff for BO12130.3prime
Subject Subject Range Query Range Percent Splice Strand
pxb-RB 596..827 77..311 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:02:14 Download gff for BO12130.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15671956..15672260 7..311 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:03:20 Download gff for BO12130.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11497678..11497982 7..311 97   Minus

BO12130.5prime Sequence

320 bp (319 high quality bases) assembled on 2006-04-20

> BO12130.5prime
GAAGTTATCAGTCGACATGTGGAAAATGCTGGATATGATGGAACTGTCCG
AAGCAGAGCTCTTCATGTTCGACTGCGACGATTGCTCGGGCACGCCCCTT
GCCCCACCGCCCCAGTTCCTCATCCCACCGCCACCAAGACCGCCGGCCCT
GGCCGAATTCACGGTGGTGCCGCAGGATTGCAACGAGGAGCAATTGGCCC
AGCAGCAATGGGAGAGCGATGTCTGCCAGGCAATGCCGGTAAGTGGGAAA
ATCTACCCAAAATATGATAAGCCCATTATAAAAACTCGAAAAATTCTCCA
ATATGCAAGCTTTCTAGACC

BO12130.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG33207-PA 291 pxb-RA 1..288 17..304 1440 100 Plus
CG33207-PB 1911 pxb-RB 1..222 17..238 1110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
pxb-RC 5086 CG33207-RC 599..820 17..238 1110 100 Plus
pxb-RB 3024 CG33207-RB 599..820 17..238 1110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15671959..15672246 17..304 1440 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:34:13 has no hits.

BO12130.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:54 Download gff for BO12130.5prime
Subject Subject Range Query Range Percent Splice Strand
pxb-PA 1..291 17..308 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:04 Download gff for BO12130.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33207-PA 1..291 17..308 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:13:05 Download gff for BO12130.5prime
Subject Subject Range Query Range Percent Splice Strand
pxb-RB 596..827 12..246 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:18:19 Download gff for BO12130.5prime
Subject Subject Range Query Range Percent Splice Strand
pxb-RB 596..827 12..246 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:18:19 Download gff for BO12130.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15671956..15672260 12..316 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:13:05 Download gff for BO12130.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11497678..11497982 12..316 97   Plus

BO12130.complete Sequence

322 bp assembled on 2006-10-11

GenBank Submission: FJ632321

> BO12130.complete
GAAGTTATCAGTCGACATGTGGAAAATGCTGGATATGATGGAACTGTCCG
AAGCAGAGCTCTTCATGTTCGACTGCGACGATTGCTCGGGCACGCCCCTT
GCCCCACCGCCCCAGTTCCTCATCCCACCGCCACCAAGACCGCCGGCCCT
GGCCGAATTCACGGTGGTGCCGCAGGATTGCAACGAGGAGCAATTGGCCC
AGCAGCAATGGGAGAGCGATGTCTGCCAGGCAATGCCGGTAAGTGGGAAA
ATCTACCCAAAATATGATAAGCCCATTATAAAAACTCGAAAAATTCTCCA
ATATGCAAGCTTTCTAGACCAT

BO12130.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:25:23
Subject Length Description Subject Range Query Range Score Percent Strand
pxb-RC 1911 CG33207-PC 1..222 17..238 1110 100 Plus
pxb-RB 1911 CG33207-PB 1..222 17..238 1110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
pxb-RC 5086 CG33207-RC 599..820 17..238 1110 100 Plus
pxb-RB 3024 CG33207-RB 599..820 17..238 1110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15671959..15672246 17..304 1440 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:25:22 has no hits.

BO12130.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:21 Download gff for BO12130.complete
Subject Subject Range Query Range Percent Splice Strand
pxb-RA 1..291 17..308 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:26 Download gff for BO12130.complete
Subject Subject Range Query Range Percent Splice Strand
pxb-RA 593..897 12..316 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:10 Download gff for BO12130.complete
Subject Subject Range Query Range Percent Splice Strand
pxb-RB 599..827 17..246 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:22 Download gff for BO12130.complete
Subject Subject Range Query Range Percent Splice Strand
pxb-RA 593..897 12..316 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:18 Download gff for BO12130.complete
Subject Subject Range Query Range Percent Splice Strand
pxb-RB 599..827 17..246 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:18 Download gff for BO12130.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15671959..15672246 17..306 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:10 Download gff for BO12130.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11497681..11497968 17..306 99   Plus

BO12130.pep Sequence

Translation from 16 to 322

> BO12130.pep
MWKMLDMMELSEAELFMFDCDDCSGTPLAPPPQFLIPPPPRPPALAEFTV
VPQDCNEEQLAQQQWESDVCQAMPVSGKIYPKYDKPIIKTRKILQYASFL
DH

BO12130.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:45
Subject Length Description Subject Range Query Range Score Percent Strand
pxb-PC 636 CG33207-PC 1..75 1..75 417 98.7 Plus
pxb-PB 636 CG33207-PB 1..75 1..75 417 98.7 Plus