Clone Sequence Records
BO12130.3prime Sequence
320 bp (319 high quality bases) assembled on 2006-04-20
> BO12130.3prime
ATGGTCTAGAAAGCTTGCATATTGGAGAATTTTTCGAGTTTTTATAATGG
GCTTATCATATTTTGGGTAGATTTTCCCACTTACCGGCATTGCCTGGCAG
ACATCGCTCTCCCATTGCTGCTGGGCCAATTGCTCCTCGTTGCAATCCTG
CGGCACCACCGTGAATTCGGCCAGGGCCGGCGGTCTTGGTGGCGGTGGGA
TGAGGAACTGGGGCGGTGGGGCAAGGGGCGTGCCCGAGCAATCGTCGCAG
TCGAACATGAAGAGCTCTGCTTCGGACAGTTCCATCATATCCAGCATTTT
CCACATGTCGACTGATAACT
BO12130.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33207-PA | 291 | pxb-RA | 1..288 | 306..19 | 1440 | 100 | Minus |
CG33207-PB | 1911 | pxb-RB | 1..222 | 306..85 | 1110 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:14:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pxb-RC | 5086 | CG33207-RC | 599..820 | 306..85 | 1110 | 100 | Minus |
pxb-RB | 3024 | CG33207-RB | 599..820 | 306..85 | 1110 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:14:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15671959..15672246 | 306..19 | 1440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 14:14:09 has no hits.
BO12130.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:53 Download gff for
BO12130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pxb-PA | 1..291 | 15..306 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:02 Download gff for
BO12130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33207-PA | 1..291 | 15..306 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 03:03:20 Download gff for
BO12130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pxb-RB | 596..827 | 77..311 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:02:14 Download gff for
BO12130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pxb-RB | 596..827 | 77..311 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:02:14 Download gff for
BO12130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15671956..15672260 | 7..311 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:03:20 Download gff for
BO12130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11497678..11497982 | 7..311 | 97 | | Minus |
BO12130.5prime Sequence
320 bp (319 high quality bases) assembled on 2006-04-20
> BO12130.5prime
GAAGTTATCAGTCGACATGTGGAAAATGCTGGATATGATGGAACTGTCCG
AAGCAGAGCTCTTCATGTTCGACTGCGACGATTGCTCGGGCACGCCCCTT
GCCCCACCGCCCCAGTTCCTCATCCCACCGCCACCAAGACCGCCGGCCCT
GGCCGAATTCACGGTGGTGCCGCAGGATTGCAACGAGGAGCAATTGGCCC
AGCAGCAATGGGAGAGCGATGTCTGCCAGGCAATGCCGGTAAGTGGGAAA
ATCTACCCAAAATATGATAAGCCCATTATAAAAACTCGAAAAATTCTCCA
ATATGCAAGCTTTCTAGACC
BO12130.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33207-PA | 291 | pxb-RA | 1..288 | 17..304 | 1440 | 100 | Plus |
CG33207-PB | 1911 | pxb-RB | 1..222 | 17..238 | 1110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:34:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pxb-RC | 5086 | CG33207-RC | 599..820 | 17..238 | 1110 | 100 | Plus |
pxb-RB | 3024 | CG33207-RB | 599..820 | 17..238 | 1110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:34:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15671959..15672246 | 17..304 | 1440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:34:13 has no hits.
BO12130.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:54 Download gff for
BO12130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pxb-PA | 1..291 | 17..308 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:04 Download gff for
BO12130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33207-PA | 1..291 | 17..308 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:13:05 Download gff for
BO12130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pxb-RB | 596..827 | 12..246 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:18:19 Download gff for
BO12130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pxb-RB | 596..827 | 12..246 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:18:19 Download gff for
BO12130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15671956..15672260 | 12..316 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:13:05 Download gff for
BO12130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11497678..11497982 | 12..316 | 97 | | Plus |
BO12130.complete Sequence
322 bp assembled on 2006-10-11
GenBank Submission: FJ632321
> BO12130.complete
GAAGTTATCAGTCGACATGTGGAAAATGCTGGATATGATGGAACTGTCCG
AAGCAGAGCTCTTCATGTTCGACTGCGACGATTGCTCGGGCACGCCCCTT
GCCCCACCGCCCCAGTTCCTCATCCCACCGCCACCAAGACCGCCGGCCCT
GGCCGAATTCACGGTGGTGCCGCAGGATTGCAACGAGGAGCAATTGGCCC
AGCAGCAATGGGAGAGCGATGTCTGCCAGGCAATGCCGGTAAGTGGGAAA
ATCTACCCAAAATATGATAAGCCCATTATAAAAACTCGAAAAATTCTCCA
ATATGCAAGCTTTCTAGACCAT
BO12130.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:25:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pxb-RC | 1911 | CG33207-PC | 1..222 | 17..238 | 1110 | 100 | Plus |
pxb-RB | 1911 | CG33207-PB | 1..222 | 17..238 | 1110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:25:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pxb-RC | 5086 | CG33207-RC | 599..820 | 17..238 | 1110 | 100 | Plus |
pxb-RB | 3024 | CG33207-RB | 599..820 | 17..238 | 1110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:25:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15671959..15672246 | 17..304 | 1440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:25:22 has no hits.
BO12130.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:21 Download gff for
BO12130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pxb-RA | 1..291 | 17..308 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:26 Download gff for
BO12130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pxb-RA | 593..897 | 12..316 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:10 Download gff for
BO12130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pxb-RB | 599..827 | 17..246 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:22 Download gff for
BO12130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pxb-RA | 593..897 | 12..316 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:18 Download gff for
BO12130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pxb-RB | 599..827 | 17..246 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:18 Download gff for
BO12130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15671959..15672246 | 17..306 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:10 Download gff for
BO12130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11497681..11497968 | 17..306 | 99 | | Plus |
BO12130.pep Sequence
Translation from 16 to 322
> BO12130.pep
MWKMLDMMELSEAELFMFDCDDCSGTPLAPPPQFLIPPPPRPPALAEFTV
VPQDCNEEQLAQQQWESDVCQAMPVSGKIYPKYDKPIIKTRKILQYASFL
DH
BO12130.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pxb-PC | 636 | CG33207-PC | 1..75 | 1..75 | 417 | 98.7 | Plus |
pxb-PB | 636 | CG33207-PB | 1..75 | 1..75 | 417 | 98.7 | Plus |