Clone BO12132 Report

Search the DGRC for BO12132

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptCG5013-RA
Protein status:BO12132.pep: validated full length
Sequenced Size:775

Clone Sequence Records

BO12132.3prime Sequence

773 bp (772 high quality bases) assembled on 2006-04-20

> BO12132.3prime
ATGGTCTAGAAAGCTTGCTGTTGTATTTATTGAGCCATCGCTTTCGATGC
GCGTGATCTCCAGAAGATGAATAGTGTGTCCGCCCATAAACTCCAGCAGA
TCCACTCCCGACTCCTTGCCAATGTCCTCCATGCTGATGGGTAAAGCCTG
CAGCTTCCACTTCTTGAGCAGCGCCTCTATGGACCAGTCGGCGCTCCGCT
CCTGGTATGTAAATATAAATTTGGCCCCGGCATTTCGCTCCAGCAGAAAA
GCAACTGTGACCACGATATCCTCGAACACGCTGGGATCGTAGAAGCAGTC
TGCTGCAATGATAAGGTCCAGAGGCGGCAGTCGGAACACGCTGTTCAGCA
GCAGGCCCCAACTCAGGCCCACCACATCGATATCAACGCCCGGCTGCAGT
TGATTGGCCAGGCAGGACTTTCGGATATGGGCCAGTGACTTGGGCAGAAT
GCAGTTGTCAGTAAGTACCACTTGGGCGCGGCATTTGGCCGCCAGAATGC
CGGGCAGGGCGGTGCCGCTTCCCAGCTCCAGGATGCGCTTGCCCGCCAGT
GTCTGTCGGCGCTCCCACAGGAAGTGGGCTAAAATTGGTGCGCAAGGCCA
TGTGTAGAAGGAGTAGGCACCCTGAAGCAGCTCAGGTATTTTGATCTCCA
GTCGCTCGGCGGGTGATCCGCTGAAGACAAACTTGCGGATATGCTCGGCA
GTGGCTGTGGCCGCCACAATGTCATTGTCCTCGCTGCCGCTCTTCATGTG
GAAACGCATGTCGACTGATAACT

BO12132.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5013-PA 744 CG5013-RA 1..741 759..19 3705 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:03:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5013-RA 973 CG5013-RA 119..859 759..19 3705 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:03:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16049966..16050579 632..19 3070 100 Minus
3R 32079331 3R 16049788..16049916 759..631 645 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:03:39 has no hits.

BO12132.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:57 Download gff for BO12132.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5013-PA 1..744 15..759 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:08 Download gff for BO12132.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5013-PA 1..744 15..759 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:28:16 Download gff for BO12132.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5013-RA 119..862 15..759 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:39 Download gff for BO12132.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5013-RA 119..862 15..759 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:39 Download gff for BO12132.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16049788..16049916 631..759 100 -> Minus
3R 16049968..16050582 15..630 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:28:16 Download gff for BO12132.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11875510..11875638 631..759 100 -> Minus
arm_3R 11875690..11876304 15..630 99   Minus

BO12132.5prime Sequence

773 bp (772 high quality bases) assembled on 2006-04-20

> BO12132.5prime
GAAGTTATCAGTCGACATGCGTTTCCACATGAAGAGCGGCAGCGAGGACA
ATGACATTGTGGCGGCCACAGCCACTGCCGAGCATATCCGCAAGTTTGTC
TTCAGCGGATCACCCGCCGAGCGACTGGAGATCAAAATACCTGAGCTGCT
TCAGGGTGCCTACTCCTTCTACACATGGCCTTGCGCACCAATTTTAGCCC
ACTTCCTGTGGGAGCGCCGACAGACACTGGCGGGCAAGCGCATCCTGGAG
CTGGGAAGCGGCACCGCCCTGCCCGGCATTCTGGCGGCCAAATGCCGCGC
CCAAGTGGTACTTACTGACAACTGCATTCTGCCCAAGTCACTGGCCCATA
TCCGAAAGTCCTGCCTGGCCAATCAACTGCAGCCGGGCGTTGATATCGAT
GTGGTGGGCCTGAGTTGGGGCCTGCTGCTGAACAGCGTGTTCCGACTGCC
GCCTCTGGACCTTATCATTGCAGCAGACTGCTTCTACGATCCCAGCGTGT
TCGAGGATATCGTGGTCACAGTTGCTTTTCTGCTGGAGCGAAATGCCGGG
GCCAAATTTATATTTACATACCAGGAGCGGAGCGCCGACTGGTCCATAGA
GGCGCTGCTCAAGAAGTGGAAGCTGCAGGCTTTACCCATCAGCATGGAGG
ACATTGGCAAGGAGTCGGGAGTGGATCTGCTGGAGTTTATGGGCGGACAC
ACTATTCATCTTCTGGAGATCACGCGCATCGAAAGCGATGGCTCAATAAA
TACAACAGCAAGCTTTCTAGACC

BO12132.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5013-PA 744 CG5013-RA 1..741 17..757 3705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5013-RA 973 CG5013-RA 119..859 17..757 3705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16049966..16050579 144..757 3070 100 Plus
3R 32079331 3R 16049788..16049916 17..145 645 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:44:53 has no hits.

BO12132.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:58 Download gff for BO12132.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5013-PA 1..744 17..761 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:09 Download gff for BO12132.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5013-PA 1..744 17..761 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:44:35 Download gff for BO12132.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5013-RA 119..862 17..761 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:09:19 Download gff for BO12132.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5013-RA 119..862 17..761 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:09:19 Download gff for BO12132.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16049788..16049916 17..145 100 -> Plus
3R 16049968..16050582 146..761 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:44:35 Download gff for BO12132.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11875510..11875638 17..145 100 -> Plus
arm_3R 11875690..11876304 146..761 99   Plus

BO12132.complete Sequence

775 bp assembled on 2006-10-11

GenBank Submission: FJ632322

> BO12132.complete
GAAGTTATCAGTCGACATGCGTTTCCACATGAAGAGCGGCAGCGAGGACA
ATGACATTGTGGCGGCCACAGCCACTGCCGAGCATATCCGCAAGTTTGTC
TTCAGCGGATCACCCGCCGAGCGACTGGAGATCAAAATACCTGAGCTGCT
TCAGGGTGCCTACTCCTTCTACACATGGCCTTGCGCACCAATTTTAGCCC
ACTTCCTGTGGGAGCGCCGACAGACACTGGCGGGCAAGCGCATCCTGGAG
CTGGGAAGCGGCACCGCCCTGCCCGGCATTCTGGCGGCCAAATGCCGCGC
CCAAGTGGTACTTACTGACAACTGCATTCTGCCCAAGTCACTGGCCCATA
TCCGAAAGTCCTGCCTGGCCAATCAACTGCAGCCGGGCGTTGATATCGAT
GTGGTGGGCCTGAGTTGGGGCCTGCTGCTGAACAGCGTGTTCCGACTGCC
GCCTCTGGACCTTATCATTGCAGCAGACTGCTTCTACGATCCCAGCGTGT
TCGAGGATATCGTGGTCACAGTTGCTTTTCTGCTGGAGCGAAATGCCGGG
GCCAAATTTATATTTACATACCAGGAGCGGAGCGCCGACTGGTCCATAGA
GGCGCTGCTCAAGAAGTGGAAGCTGCAGGCTTTACCCATCAGCATGGAGG
ACATTGGCAAGGAGTCGGGAGTGGATCTGCTGGAGTTTATGGGCGGACAC
ACTATTCATCTTCTGGAGATCACGCGCATCGAAAGCGATGGCTCAATAAA
TACAACAGCAAGCTTTCTAGACCAT

BO12132.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5013-RA 744 CG5013-PA 1..741 17..757 3705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5013-RA 973 CG5013-RA 119..859 17..757 3705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16049966..16050579 144..757 3070 100 Plus
3R 32079331 3R 16049788..16049916 17..145 645 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:34:54 has no hits.

BO12132.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:30 Download gff for BO12132.complete
Subject Subject Range Query Range Percent Splice Strand
CG5013-RA 1..744 17..761 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:16 Download gff for BO12132.complete
Subject Subject Range Query Range Percent Splice Strand
CG5013-RA 118..861 17..761 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:38 Download gff for BO12132.complete
Subject Subject Range Query Range Percent Splice Strand
CG5013-RA 119..859 17..759 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:31 Download gff for BO12132.complete
Subject Subject Range Query Range Percent Splice Strand
CG5013-RA 118..861 17..761 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:31 Download gff for BO12132.complete
Subject Subject Range Query Range Percent Splice Strand
CG5013-RA 119..859 17..759 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:31 Download gff for BO12132.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16049788..16049916 17..145 100 -> Plus
3R 16049968..16050579 146..759 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:38 Download gff for BO12132.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11875510..11875638 17..145 100 -> Plus
arm_3R 11875690..11876301 146..759 99   Plus

BO12132.pep Sequence

Translation from 16 to 775

> BO12132.pep
MRFHMKSGSEDNDIVAATATAEHIRKFVFSGSPAERLEIKIPELLQGAYS
FYTWPCAPILAHFLWERRQTLAGKRILELGSGTALPGILAAKCRAQVVLT
DNCILPKSLAHIRKSCLANQLQPGVDIDVVGLSWGLLLNSVFRLPPLDLI
IAADCFYDPSVFEDIVVTVAFLLERNAGAKFIFTYQERSADWSIEALLKK
WKLQALPISMEDIGKESGVDLLEFMGGHTIHLLEITRIESDGSINTTASF
LDH

BO12132.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5013-PA 247 CG5013-PA 1..247 1..247 1274 100 Plus