Clone Sequence Records
BO12132.3prime Sequence
773 bp (772 high quality bases) assembled on 2006-04-20
> BO12132.3prime
ATGGTCTAGAAAGCTTGCTGTTGTATTTATTGAGCCATCGCTTTCGATGC
GCGTGATCTCCAGAAGATGAATAGTGTGTCCGCCCATAAACTCCAGCAGA
TCCACTCCCGACTCCTTGCCAATGTCCTCCATGCTGATGGGTAAAGCCTG
CAGCTTCCACTTCTTGAGCAGCGCCTCTATGGACCAGTCGGCGCTCCGCT
CCTGGTATGTAAATATAAATTTGGCCCCGGCATTTCGCTCCAGCAGAAAA
GCAACTGTGACCACGATATCCTCGAACACGCTGGGATCGTAGAAGCAGTC
TGCTGCAATGATAAGGTCCAGAGGCGGCAGTCGGAACACGCTGTTCAGCA
GCAGGCCCCAACTCAGGCCCACCACATCGATATCAACGCCCGGCTGCAGT
TGATTGGCCAGGCAGGACTTTCGGATATGGGCCAGTGACTTGGGCAGAAT
GCAGTTGTCAGTAAGTACCACTTGGGCGCGGCATTTGGCCGCCAGAATGC
CGGGCAGGGCGGTGCCGCTTCCCAGCTCCAGGATGCGCTTGCCCGCCAGT
GTCTGTCGGCGCTCCCACAGGAAGTGGGCTAAAATTGGTGCGCAAGGCCA
TGTGTAGAAGGAGTAGGCACCCTGAAGCAGCTCAGGTATTTTGATCTCCA
GTCGCTCGGCGGGTGATCCGCTGAAGACAAACTTGCGGATATGCTCGGCA
GTGGCTGTGGCCGCCACAATGTCATTGTCCTCGCTGCCGCTCTTCATGTG
GAAACGCATGTCGACTGATAACT
BO12132.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5013-PA | 744 | CG5013-RA | 1..741 | 759..19 | 3705 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:03:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5013-RA | 973 | CG5013-RA | 119..859 | 759..19 | 3705 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:03:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16049966..16050579 | 632..19 | 3070 | 100 | Minus |
3R | 32079331 | 3R | 16049788..16049916 | 759..631 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:03:39 has no hits.
BO12132.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:57 Download gff for
BO12132.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5013-PA | 1..744 | 15..759 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:08 Download gff for
BO12132.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5013-PA | 1..744 | 15..759 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:28:16 Download gff for
BO12132.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5013-RA | 119..862 | 15..759 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:39 Download gff for
BO12132.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5013-RA | 119..862 | 15..759 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:39 Download gff for
BO12132.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16049788..16049916 | 631..759 | 100 | -> | Minus |
3R | 16049968..16050582 | 15..630 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:28:16 Download gff for
BO12132.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11875510..11875638 | 631..759 | 100 | -> | Minus |
arm_3R | 11875690..11876304 | 15..630 | 99 | | Minus |
BO12132.5prime Sequence
773 bp (772 high quality bases) assembled on 2006-04-20
> BO12132.5prime
GAAGTTATCAGTCGACATGCGTTTCCACATGAAGAGCGGCAGCGAGGACA
ATGACATTGTGGCGGCCACAGCCACTGCCGAGCATATCCGCAAGTTTGTC
TTCAGCGGATCACCCGCCGAGCGACTGGAGATCAAAATACCTGAGCTGCT
TCAGGGTGCCTACTCCTTCTACACATGGCCTTGCGCACCAATTTTAGCCC
ACTTCCTGTGGGAGCGCCGACAGACACTGGCGGGCAAGCGCATCCTGGAG
CTGGGAAGCGGCACCGCCCTGCCCGGCATTCTGGCGGCCAAATGCCGCGC
CCAAGTGGTACTTACTGACAACTGCATTCTGCCCAAGTCACTGGCCCATA
TCCGAAAGTCCTGCCTGGCCAATCAACTGCAGCCGGGCGTTGATATCGAT
GTGGTGGGCCTGAGTTGGGGCCTGCTGCTGAACAGCGTGTTCCGACTGCC
GCCTCTGGACCTTATCATTGCAGCAGACTGCTTCTACGATCCCAGCGTGT
TCGAGGATATCGTGGTCACAGTTGCTTTTCTGCTGGAGCGAAATGCCGGG
GCCAAATTTATATTTACATACCAGGAGCGGAGCGCCGACTGGTCCATAGA
GGCGCTGCTCAAGAAGTGGAAGCTGCAGGCTTTACCCATCAGCATGGAGG
ACATTGGCAAGGAGTCGGGAGTGGATCTGCTGGAGTTTATGGGCGGACAC
ACTATTCATCTTCTGGAGATCACGCGCATCGAAAGCGATGGCTCAATAAA
TACAACAGCAAGCTTTCTAGACC
BO12132.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5013-PA | 744 | CG5013-RA | 1..741 | 17..757 | 3705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:44:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5013-RA | 973 | CG5013-RA | 119..859 | 17..757 | 3705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16049966..16050579 | 144..757 | 3070 | 100 | Plus |
3R | 32079331 | 3R | 16049788..16049916 | 17..145 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:44:53 has no hits.
BO12132.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:26:58 Download gff for
BO12132.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5013-PA | 1..744 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:09 Download gff for
BO12132.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5013-PA | 1..744 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:44:35 Download gff for
BO12132.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5013-RA | 119..862 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:09:19 Download gff for
BO12132.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5013-RA | 119..862 | 17..761 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:09:19 Download gff for
BO12132.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16049788..16049916 | 17..145 | 100 | -> | Plus |
3R | 16049968..16050582 | 146..761 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:44:35 Download gff for
BO12132.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11875510..11875638 | 17..145 | 100 | -> | Plus |
arm_3R | 11875690..11876304 | 146..761 | 99 | | Plus |
BO12132.complete Sequence
775 bp assembled on 2006-10-11
GenBank Submission: FJ632322
> BO12132.complete
GAAGTTATCAGTCGACATGCGTTTCCACATGAAGAGCGGCAGCGAGGACA
ATGACATTGTGGCGGCCACAGCCACTGCCGAGCATATCCGCAAGTTTGTC
TTCAGCGGATCACCCGCCGAGCGACTGGAGATCAAAATACCTGAGCTGCT
TCAGGGTGCCTACTCCTTCTACACATGGCCTTGCGCACCAATTTTAGCCC
ACTTCCTGTGGGAGCGCCGACAGACACTGGCGGGCAAGCGCATCCTGGAG
CTGGGAAGCGGCACCGCCCTGCCCGGCATTCTGGCGGCCAAATGCCGCGC
CCAAGTGGTACTTACTGACAACTGCATTCTGCCCAAGTCACTGGCCCATA
TCCGAAAGTCCTGCCTGGCCAATCAACTGCAGCCGGGCGTTGATATCGAT
GTGGTGGGCCTGAGTTGGGGCCTGCTGCTGAACAGCGTGTTCCGACTGCC
GCCTCTGGACCTTATCATTGCAGCAGACTGCTTCTACGATCCCAGCGTGT
TCGAGGATATCGTGGTCACAGTTGCTTTTCTGCTGGAGCGAAATGCCGGG
GCCAAATTTATATTTACATACCAGGAGCGGAGCGCCGACTGGTCCATAGA
GGCGCTGCTCAAGAAGTGGAAGCTGCAGGCTTTACCCATCAGCATGGAGG
ACATTGGCAAGGAGTCGGGAGTGGATCTGCTGGAGTTTATGGGCGGACAC
ACTATTCATCTTCTGGAGATCACGCGCATCGAAAGCGATGGCTCAATAAA
TACAACAGCAAGCTTTCTAGACCAT
BO12132.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:34:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5013-RA | 744 | CG5013-PA | 1..741 | 17..757 | 3705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5013-RA | 973 | CG5013-RA | 119..859 | 17..757 | 3705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16049966..16050579 | 144..757 | 3070 | 100 | Plus |
3R | 32079331 | 3R | 16049788..16049916 | 17..145 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:34:54 has no hits.
BO12132.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:30 Download gff for
BO12132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5013-RA | 1..744 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:16 Download gff for
BO12132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5013-RA | 118..861 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:38 Download gff for
BO12132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5013-RA | 119..859 | 17..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:31 Download gff for
BO12132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5013-RA | 118..861 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:31 Download gff for
BO12132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5013-RA | 119..859 | 17..759 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:31 Download gff for
BO12132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16049788..16049916 | 17..145 | 100 | -> | Plus |
3R | 16049968..16050579 | 146..759 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:38 Download gff for
BO12132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11875510..11875638 | 17..145 | 100 | -> | Plus |
arm_3R | 11875690..11876301 | 146..759 | 99 | | Plus |
BO12132.pep Sequence
Translation from 16 to 775
> BO12132.pep
MRFHMKSGSEDNDIVAATATAEHIRKFVFSGSPAERLEIKIPELLQGAYS
FYTWPCAPILAHFLWERRQTLAGKRILELGSGTALPGILAAKCRAQVVLT
DNCILPKSLAHIRKSCLANQLQPGVDIDVVGLSWGLLLNSVFRLPPLDLI
IAADCFYDPSVFEDIVVTVAFLLERNAGAKFIFTYQERSADWSIEALLKK
WKLQALPISMEDIGKESGVDLLEFMGGHTIHLLEITRIESDGSINTTASF
LDH
BO12132.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5013-PA | 247 | CG5013-PA | 1..247 | 1..247 | 1274 | 100 | Plus |