Clone Sequence Records
BO12134.3prime Sequence
899 bp (822 high quality bases) assembled on 2006-04-20
> BO12134.3prime
ATGGTCTAGAAAGCTTGCCATAAAGTCGCAGAGATATTGGCGGACATTAA
AGCCCACCACCTTGCCAATCTGCAGGACAAACTCCAAGCCAATGGTGCAC
TGCAGCCTAGCGGAACCTTCCATTATGTTTTGTTCGCCGGAGACGAAGCT
TAGTAGATTGAGGTGCACCAAAGTTGAGATCTGGGAGAGAAGGTTGCAGG
TCAGACCGACTTTCTCCTCTAGAATGGCGTAGAAAATGGCCAGCAAACGA
TCGATGCTAAAGGATTTGGGTCCCAAAGTGGTGGACATTTTCTCCGTGGT
CTTGGCTCTGGCGTTGACCGTCTGCATCCGCTTTCGCTGTTTTCCATGGT
GCTTGACGAACAATCGCTTGTCCTGCTTGGCGGCATTGTGGCTGGCTAAG
AAGGCAGCGATCAACAGAAATTTGGCATAGTAGGGCAGCTCCAGCGACTG
CGCCAGCTTGCGAACGCTCTGATCTTCTATGGCGGTGAAATCTTCAACTT
CTTCCGCGGGTTTTTCAATTCGCATATAAATCTGGGTTAAGGCGGAACGC
AGTGGTCCAGCTATATGCCGCCAAAGCCGGGAGATGTCCGTGGCATCCAC
AGTGCCGTCGAGTACAGGCTCCAAGTATGTGGACAGACACTTCCTGGCGG
TCAGCTGGAGCTCTGGAACATCGCGACAGGCTTTGTAAAAGACGCTCAGA
AAGAGATTCAGATAGTTGTTGTAGAAGTCTTCAGTTACGGCTTCCTGGCA
AATCTCCAGACGCTTCTTATCCTGGGCGAACTGTTCCAGCAGTTGATTTC
GCACCTGCTGAAAGTCAGATCCCAGGATGCGCTGTGTCTCCGCCTTTGTG
TACTGCGCCAAGTGCAGGCAGACGATTTCACTAAAGTCGGTCTTGTTGT
BO12134.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7833-PA | 1383 | Orc5-RA | 515..1380 | 884..19 | 4280 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc5-RA | 1687 | CG7833-RA | 700..1580 | 899..19 | 4330 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13830536..13831134 | 899..301 | 2920 | 99.2 | Minus |
| 2L | 23513712 | 2L | 13831186..13831469 | 302..19 | 1420 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:50:17 has no hits.
BO12134.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:01 Download gff for
BO12134.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc5-PA | 500..1383 | 18..899 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:13 Download gff for
BO12134.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7833-PA | 500..1383 | 18..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:49:32 Download gff for
BO12134.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc5-RA | 700..1584 | 13..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:05:13 Download gff for
BO12134.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc5-RA | 700..1584 | 13..899 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:05:13 Download gff for
BO12134.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13830536..13831134 | 301..899 | 99 | -> | Minus |
| 2L | 13831188..13831475 | 17..300 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:49:32 Download gff for
BO12134.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13830536..13831134 | 301..899 | 99 | -> | Minus |
| arm_2L | 13831188..13831475 | 17..300 | 98 | <- | Minus |
BO12134.5prime Sequence
878 bp (843 high quality bases) assembled on 2006-04-20
> BO12134.5prime
GAAGTTATCAGTCGACATGGAAGCCATCTGCTCCTCCTTGGAGCCGCTGT
TTCCCTGTCGGGAGGCGGCCATTGAAACGCTGGGCGAGCTGATAGGAGAT
TCGAGTGAGACATATCCCTCGGCAATTTACCTATTCGGACACAGTGGAAC
CGGCAAAACAGCTCTGACCAGAGCTTTCCTCAAAGAATGTGGAAAACGGC
AAAATGTCCGCACAGCGCATTTAAATGCCATCGAATGCTACACCACCAAG
ATAATGCTGGAGATCCTGTTAGACTCGCTGGCACCCGATCAAGGTGATGC
GCTGAAGGTCGACAACATGCTGGACTTTGTGGAGCAGCTGCGTCGGCAGG
CCGCTACACGCGTGGAGGATCAGGGATTTCTCATAGCCGTGGATAACGCG
GAAAGGCTGCGCGACATGGATGCCAATGTGTTGCCCGTTCTTCTCCGACT
GCAGGAGCTGACCAACCTGAATCTGTGCGTTATTCTGCTCTCCCAGCTGC
CCTTTGAGAAGTTCTACAACAAGACCGGACTTAGTGAAATCGTCTGCCTG
CACTTGGCGCAGTACAACAAGGCGGAGACACAGCGCATCCTGGGATCTGA
CTTTCAGCAGGTGCGAAATCAACTGCTGGAACAGTTCGCCCAGGATAAGA
AGCGTCTGGAGATTTGCCAGGAAGCCGTAACTGAAGACTTCTACAACAAC
TATCTGAATCTCTTTCTGAGCGTCTTTTACAAAGCCTGTCGCGATGTTCC
AGAGCTCCAGCTGACCGCCAGGAAGTGTCTGTCCACATACTTGGAGCCTG
TACTCGACGGCACTGTGGATGCCACGGACATCTCCCGGCTTTGGCGGCAT
ATAGCTGGACCACTGCGTTCCGCCTTAA
BO12134.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7833-PA | 1383 | Orc5-RA | 1..862 | 17..878 | 4310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:06:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc5-RA | 1687 | CG7833-RA | 201..1062 | 17..878 | 4310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:06:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13830037..13830898 | 17..878 | 4310 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:06:29 has no hits.
BO12134.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:02 Download gff for
BO12134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc5-PA | 1..860 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:14 Download gff for
BO12134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7833-PA | 1..860 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:18:14 Download gff for
BO12134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc5-RA | 196..1062 | 9..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:30 Download gff for
BO12134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc5-RA | 196..1062 | 9..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:36:30 Download gff for
BO12134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13830032..13830898 | 9..878 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:18:14 Download gff for
BO12134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13830032..13830898 | 9..878 | 99 | | Plus |
BO12134.complete Sequence
1414 bp assembled on 2006-10-11
GenBank Submission: FJ632323
> BO12134.complete
GAAGTTATCAGTCGACATGGAAGCCATCTGCTCCTCCTTGGAGCCGCTGT
TTCCCTGTCGGGAGGCGGCCATTGAAACGCTGGGCGAGCTGATAGGAGAT
TCGAGTGAGACATATCCCTCGGCAATTTACCTATTCGGACACAGTGGAAC
CGGCAAAACAGCTCTGACCAGAGCTTTCCTCAAAGAATGTGGAAAACGGC
AAAATGTCCGCACAGCGCATTTAAATGCCATCGAATGCTACACCACCAAG
ATAATGCTGGAGATCCTGTTAGACTCGCTGGCACCCGATCAAGGTGATGC
GCTGAAGGTCGACAACATGCTGGACTTTGTGGAGCAGCTGCGTCGGCAGG
CCGCTACACGCGTGGAGGATCAGGGATTTCTCATAGCCGTGGATAACGCG
GAAAGGCTGCGCGACATGGATGCCAATGTGTTGCCCGTTCTTCTCCGACT
GCAGGAGCTGACCAACCTGAATCTGTGCGTTATTCTGCTCTCCCAGCTGC
CCTTTGAGAAGTTCTACAACAAGACCGGACTTAGTGAAATCGTCTGCCTG
CACTTGGCGCAGTACAACAAGGCGGAGACACAGCGCATCCTGGGATCTGA
CTTTCAGCAGGTGCGAAATCAACTGCTGGAACAGTTCGCCCAGGATAAGA
AGCGTCTGGAGATTTGCCAGGAAGCCGTAACTGAAGACTTCTACAACAAC
TATCTGAATCTCTTTCTGAGCGTCTTTTACAAAGCCTGTCGCGATGTTCC
AGAGCTCCAGCTGACCGCCAGGAAGTGTCTGTCCACATACTTGGAGCCTG
TACTCGACGGCACTGTGGATGCCACGGACATCTCCCGGCTTTGGCGGCAT
ATAGCTGGACCACTGCGTTCCGCCTTAACCCAGATTTATATGCGAATTGA
AAAACCCGCGGAAGAAGTTGAAGATTTCACCGCCATAGAAGATCAGAGCG
TTCGCAAGCTGGCGCAGTCGCTGGAGCTGCCCTACTATGCCAAATTTCTG
TTGATCGCTGCCTTCTTAGCCAGCCACAATGCCGCCAAGCAGGACAAGCG
ATTGTTCGTCAAGCACCATGGAAAACAGCGAAAGCGGATGCAGACGGTCA
ACGCCAGAGCCAAGACCACGGAGAAAATGTCCACCACTTTGGGACCCAAA
TCCTTTAGCATCGATCGTTTGCTGGCCATTTTCTACGCCATTCTAGAGGA
GAAAGTCGGTCTGACCTGCAACCTTCTCTCCCAGATCTCAACTTTGGTGC
ACCTCAATCTACTAAGCTTCGTCTCCGGCGAACAAAACATAATGGAAGGT
TCCGCTAGGCTGCAGTGCACCATTGGCTTGGAGTTTGTCCTGCAGATTGG
CAAGGTGGTGGGCTTTAATGTCCGCCAATATCTCTGCGACTTTATGGCAA
GCTTTCTAGACCAT
BO12134.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:26:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc5-RA | 1383 | CG7833-PA | 1..1380 | 17..1396 | 6900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:26:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc5-RA | 1687 | CG7833-RA | 201..1580 | 17..1396 | 6900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13830037..13831134 | 17..1114 | 5490 | 100 | Plus |
| 2L | 23513712 | 2L | 13831186..13831469 | 1113..1396 | 1420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:26:27 has no hits.
BO12134.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:31 Download gff for
BO12134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc5-RA | 1..1383 | 17..1397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:18 Download gff for
BO12134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc5-RA | 342..1730 | 9..1402 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:49 Download gff for
BO12134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc5-RA | 201..1580 | 17..1398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:32 Download gff for
BO12134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc5-RA | 342..1730 | 9..1402 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:44 Download gff for
BO12134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc5-RA | 201..1580 | 17..1398 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:44 Download gff for
BO12134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13830037..13831134 | 17..1114 | 100 | -> | Plus |
| 2L | 13831188..13831469 | 1115..1398 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:49 Download gff for
BO12134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13830037..13831134 | 17..1114 | 100 | -> | Plus |
| arm_2L | 13831188..13831469 | 1115..1398 | 99 | | Plus |
BO12134.pep Sequence
Translation from 16 to 1414
> BO12134.pep
MEAICSSLEPLFPCREAAIETLGELIGDSSETYPSAIYLFGHSGTGKTAL
TRAFLKECGKRQNVRTAHLNAIECYTTKIMLEILLDSLAPDQGDALKVDN
MLDFVEQLRRQAATRVEDQGFLIAVDNAERLRDMDANVLPVLLRLQELTN
LNLCVILLSQLPFEKFYNKTGLSEIVCLHLAQYNKAETQRILGSDFQQVR
NQLLEQFAQDKKRLEICQEAVTEDFYNNYLNLFLSVFYKACRDVPELQLT
ARKCLSTYLEPVLDGTVDATDISRLWRHIAGPLRSALTQIYMRIEKPAEE
VEDFTAIEDQSVRKLAQSLELPYYAKFLLIAAFLASHNAAKQDKRLFVKH
HGKQRKRMQTVNARAKTTEKMSTTLGPKSFSIDRLLAIFYAILEEKVGLT
CNLLSQISTLVHLNLLSFVSGEQNIMEGSARLQCTIGLEFVLQIGKVVGF
NVRQYLCDFMASFLDH
BO12134.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc5-PA | 460 | CG7833-PA | 1..460 | 1..460 | 2332 | 100 | Plus |
