Clone Sequence Records
BO12135.3prime Sequence
461 bp (460 high quality bases) assembled on 2006-04-20
> BO12135.3prime
ATGGTCTAGAAAGCTTGCCTTAAAAATGCTGGTGTAGTACTCCTCCTCCA
GGTCGTACAAGTCCATGGCCATTTCGTCCCTAAGTTTCATCAGCTTCTTG
TCGCACTCGCTCTGTGTGTTCCTGAACAGCTGCGAATTGTTTGTGATGGC
CTCGTTGACCGAGTGAAAGTCGTTGAGGATTAGGTACTGTTTTAGGTCGG
CCACCAGCTTCATCAGAGACTCGCCGGCACGGACCATGTTGGCCGCGCGG
ACCTGCATTTCCAGGGCATCCTGTTCGCACTGCGTGGTCTTCGAAATCTG
GCTGTGGCTCTCACGGCGCGCCAGCTTGAGTATTTCTTCAAAATTCTCCA
GCATGCTGCGAACGTCGTCCTTGAGGCGCGCATTATAGGACTTCAGAAGC
GCCTCCTTCGACTGGGGCAAAATGGTTGTCCTGGATCCGCTGGCCATGTC
GACTGATAACT
BO12135.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3034-PA | 432 | MED22-RA | 1..429 | 447..19 | 2145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:55:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED22-RA | 602 | CG3034-RA | 78..506 | 447..19 | 2145 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:55:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 928549..928764 | 234..19 | 1080 | 100 | Minus |
X | 23542271 | X | 928216..928327 | 447..336 | 560 | 100 | Minus |
X | 23542271 | X | 928382..928485 | 337..234 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:55:58 has no hits.
BO12135.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:03 Download gff for
BO12135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED22-PA | 1..432 | 18..447 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:16 Download gff for
BO12135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3034-PA | 1..432 | 18..447 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:56:52 Download gff for
BO12135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED22-RA | 69..510 | 13..457 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:59 Download gff for
BO12135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED22-RA | 69..510 | 13..457 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:59 Download gff for
BO12135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 928207..928327 | 336..457 | 96 | -> | Minus |
X | 928384..928485 | 234..335 | 100 | -> | Minus |
X | 928550..928768 | 13..233 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:56:52 Download gff for
BO12135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 822240..822360 | 336..457 | 96 | -> | Minus |
arm_X | 822417..822518 | 234..335 | 100 | -> | Minus |
arm_X | 822583..822801 | 13..233 | 98 | | Minus |
BO12135.5prime Sequence
461 bp (460 high quality bases) assembled on 2006-04-20
> BO12135.5prime
GAAGTTATCAGTCGACATGGCCAGCGGATCCAGGACAACCATTTTGCCCC
AGTCGAAGGAGGCGCTTCTGAAGTCCTATAATGCGCGCCTCAAGGACGAC
GTTCGCAGCATGCTGGAGAATTTTGAAGAAATACTCAAGCTGGCGCGCCG
TGAGAGCCACAGCCAGATTTCGAAGACCACGCAGTGCGAACAGGATGCCC
TGGAAATGCAGGTCCGCGCGGCCAACATGGTCCGTGCCGGCGAGTCTCTG
ATGAAGCTGGTGGCCGACCTAAAACAGTACCTAATCCTCAACGACTTTCA
CTCGGTCAACGAGGCCATCACAAACAATTCGCAGCTGTTCAGGAACACAC
AGAGCGAGTGCGACAAGAAGCTGATGAAACTTAGGGACGAAATGGCCATG
GACTTGTACGACCTGGAGGAGGAGTACTACACCAGCATTTTTAAGGCAAG
CTTTCTAGACC
BO12135.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3034-PA | 432 | MED22-RA | 1..429 | 17..445 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:51:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED22-RA | 602 | CG3034-RA | 78..506 | 17..445 | 2145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:51:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 928549..928764 | 230..445 | 1080 | 100 | Plus |
X | 23542271 | X | 928216..928327 | 17..128 | 560 | 100 | Plus |
X | 23542271 | X | 928382..928485 | 127..230 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:51:31 has no hits.
BO12135.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:04 Download gff for
BO12135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED22-PA | 1..432 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:17 Download gff for
BO12135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3034-PA | 1..432 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:47:40 Download gff for
BO12135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED22-RA | 69..510 | 7..451 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:40 Download gff for
BO12135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED22-RA | 69..510 | 7..451 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:40 Download gff for
BO12135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 928207..928327 | 7..128 | 96 | -> | Plus |
X | 928384..928485 | 129..230 | 100 | -> | Plus |
X | 928550..928768 | 231..451 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:47:40 Download gff for
BO12135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 822240..822360 | 7..128 | 96 | -> | Plus |
arm_X | 822417..822518 | 129..230 | 100 | -> | Plus |
arm_X | 822583..822801 | 231..451 | 98 | | Plus |
BO12135.complete Sequence
463 bp assembled on 2006-10-11
GenBank Submission: FJ632324
> BO12135.complete
GAAGTTATCAGTCGACATGGCCAGCGGATCCAGGACAACCATTTTGCCCC
AGTCGAAGGAGGCGCTTCTGAAGTCCTATAATGCGCGCCTCAAGGACGAC
GTTCGCAGCATGCTGGAGAATTTTGAAGAAATACTCAAGCTGGCGCGCCG
TGAGAGCCACAGCCAGATTTCGAAGACCACGCAGTGCGAACAGGATGCCC
TGGAAATGCAGGTCCGCGCGGCCAACATGGTCCGTGCCGGCGAGTCTCTG
ATGAAGCTGGTGGCCGACCTAAAACAGTACCTAATCCTCAACGACTTTCA
CTCGGTCAACGAGGCCATCACAAACAATTCGCAGCTGTTCAGGAACACAC
AGAGCGAGTGCGACAAGAAGCTGATGAAACTTAGGGACGAAATGGCCATG
GACTTGTACGACCTGGAGGAGGAGTACTACACCAGCATTTTTAAGGCAAG
CTTTCTAGACCAT
BO12135.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:01:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED22-RA | 432 | CG3034-PA | 1..429 | 17..445 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED22-RA | 602 | CG3034-RA | 78..506 | 17..445 | 2145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 928549..928764 | 230..445 | 1080 | 100 | Plus |
X | 23542271 | X | 928216..928327 | 17..128 | 560 | 100 | Plus |
X | 23542271 | X | 928382..928485 | 127..230 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:01:56 has no hits.
BO12135.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:33 Download gff for
BO12135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED22-RA | 1..432 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:19 Download gff for
BO12135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED22-RA | 71..512 | 7..451 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:09 Download gff for
BO12135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED22-RA | 78..506 | 17..447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:33 Download gff for
BO12135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED22-RA | 71..512 | 7..451 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:16 Download gff for
BO12135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED22-RA | 78..506 | 17..447 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:16 Download gff for
BO12135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 928216..928327 | 17..128 | 100 | -> | Plus |
X | 928384..928485 | 129..230 | 100 | -> | Plus |
X | 928550..928764 | 231..447 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:09 Download gff for
BO12135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 822249..822360 | 17..128 | 100 | -> | Plus |
arm_X | 822417..822518 | 129..230 | 100 | -> | Plus |
arm_X | 822583..822797 | 231..447 | 99 | | Plus |
BO12135.pep Sequence
Translation from 16 to 463
> BO12135.pep
MASGSRTTILPQSKEALLKSYNARLKDDVRSMLENFEEILKLARRESHSQ
ISKTTQCEQDALEMQVRAANMVRAGESLMKLVADLKQYLILNDFHSVNEA
ITNNSQLFRNTQSECDKKLMKLRDEMAMDLYDLEEEYYTSIFKASFLDH
BO12135.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED22-PA | 143 | CG3034-PA | 1..143 | 1..143 | 711 | 100 | Plus |
CG32971-PC | 145 | CG32971-PC | 7..130 | 15..138 | 277 | 46.8 | Plus |
CG32971-PB | 145 | CG32971-PB | 7..130 | 15..138 | 277 | 46.8 | Plus |
CG32971-PA | 145 | CG32971-PA | 7..130 | 15..138 | 277 | 46.8 | Plus |