Clone BO12135 Report

Search the DGRC for BO12135

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptMED22-RA
Protein status:BO12135.pep: validated full length
Sequenced Size:463

Clone Sequence Records

BO12135.3prime Sequence

461 bp (460 high quality bases) assembled on 2006-04-20

> BO12135.3prime
ATGGTCTAGAAAGCTTGCCTTAAAAATGCTGGTGTAGTACTCCTCCTCCA
GGTCGTACAAGTCCATGGCCATTTCGTCCCTAAGTTTCATCAGCTTCTTG
TCGCACTCGCTCTGTGTGTTCCTGAACAGCTGCGAATTGTTTGTGATGGC
CTCGTTGACCGAGTGAAAGTCGTTGAGGATTAGGTACTGTTTTAGGTCGG
CCACCAGCTTCATCAGAGACTCGCCGGCACGGACCATGTTGGCCGCGCGG
ACCTGCATTTCCAGGGCATCCTGTTCGCACTGCGTGGTCTTCGAAATCTG
GCTGTGGCTCTCACGGCGCGCCAGCTTGAGTATTTCTTCAAAATTCTCCA
GCATGCTGCGAACGTCGTCCTTGAGGCGCGCATTATAGGACTTCAGAAGC
GCCTCCTTCGACTGGGGCAAAATGGTTGTCCTGGATCCGCTGGCCATGTC
GACTGATAACT

BO12135.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3034-PA 432 MED22-RA 1..429 447..19 2145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:55:59
Subject Length Description Subject Range Query Range Score Percent Strand
MED22-RA 602 CG3034-RA 78..506 447..19 2145 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 928549..928764 234..19 1080 100 Minus
X 23542271 X 928216..928327 447..336 560 100 Minus
X 23542271 X 928382..928485 337..234 520 100 Minus
Blast to na_te.dros performed on 2015-02-12 03:55:58 has no hits.

BO12135.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:03 Download gff for BO12135.3prime
Subject Subject Range Query Range Percent Splice Strand
MED22-PA 1..432 18..447 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:16 Download gff for BO12135.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3034-PA 1..432 18..447 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:56:52 Download gff for BO12135.3prime
Subject Subject Range Query Range Percent Splice Strand
MED22-RA 69..510 13..457 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:59 Download gff for BO12135.3prime
Subject Subject Range Query Range Percent Splice Strand
MED22-RA 69..510 13..457 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:59 Download gff for BO12135.3prime
Subject Subject Range Query Range Percent Splice Strand
X 928207..928327 336..457 96 -> Minus
X 928384..928485 234..335 100 -> Minus
X 928550..928768 13..233 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:56:52 Download gff for BO12135.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 822240..822360 336..457 96 -> Minus
arm_X 822417..822518 234..335 100 -> Minus
arm_X 822583..822801 13..233 98   Minus

BO12135.5prime Sequence

461 bp (460 high quality bases) assembled on 2006-04-20

> BO12135.5prime
GAAGTTATCAGTCGACATGGCCAGCGGATCCAGGACAACCATTTTGCCCC
AGTCGAAGGAGGCGCTTCTGAAGTCCTATAATGCGCGCCTCAAGGACGAC
GTTCGCAGCATGCTGGAGAATTTTGAAGAAATACTCAAGCTGGCGCGCCG
TGAGAGCCACAGCCAGATTTCGAAGACCACGCAGTGCGAACAGGATGCCC
TGGAAATGCAGGTCCGCGCGGCCAACATGGTCCGTGCCGGCGAGTCTCTG
ATGAAGCTGGTGGCCGACCTAAAACAGTACCTAATCCTCAACGACTTTCA
CTCGGTCAACGAGGCCATCACAAACAATTCGCAGCTGTTCAGGAACACAC
AGAGCGAGTGCGACAAGAAGCTGATGAAACTTAGGGACGAAATGGCCATG
GACTTGTACGACCTGGAGGAGGAGTACTACACCAGCATTTTTAAGGCAAG
CTTTCTAGACC

BO12135.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3034-PA 432 MED22-RA 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
MED22-RA 602 CG3034-RA 78..506 17..445 2145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 928549..928764 230..445 1080 100 Plus
X 23542271 X 928216..928327 17..128 560 100 Plus
X 23542271 X 928382..928485 127..230 520 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:51:31 has no hits.

BO12135.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:04 Download gff for BO12135.5prime
Subject Subject Range Query Range Percent Splice Strand
MED22-PA 1..432 17..446 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:17 Download gff for BO12135.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3034-PA 1..432 17..446 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:47:40 Download gff for BO12135.5prime
Subject Subject Range Query Range Percent Splice Strand
MED22-RA 69..510 7..451 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:40 Download gff for BO12135.5prime
Subject Subject Range Query Range Percent Splice Strand
MED22-RA 69..510 7..451 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:40 Download gff for BO12135.5prime
Subject Subject Range Query Range Percent Splice Strand
X 928207..928327 7..128 96 -> Plus
X 928384..928485 129..230 100 -> Plus
X 928550..928768 231..451 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:47:40 Download gff for BO12135.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 822240..822360 7..128 96 -> Plus
arm_X 822417..822518 129..230 100 -> Plus
arm_X 822583..822801 231..451 98   Plus

BO12135.complete Sequence

463 bp assembled on 2006-10-11

GenBank Submission: FJ632324

> BO12135.complete
GAAGTTATCAGTCGACATGGCCAGCGGATCCAGGACAACCATTTTGCCCC
AGTCGAAGGAGGCGCTTCTGAAGTCCTATAATGCGCGCCTCAAGGACGAC
GTTCGCAGCATGCTGGAGAATTTTGAAGAAATACTCAAGCTGGCGCGCCG
TGAGAGCCACAGCCAGATTTCGAAGACCACGCAGTGCGAACAGGATGCCC
TGGAAATGCAGGTCCGCGCGGCCAACATGGTCCGTGCCGGCGAGTCTCTG
ATGAAGCTGGTGGCCGACCTAAAACAGTACCTAATCCTCAACGACTTTCA
CTCGGTCAACGAGGCCATCACAAACAATTCGCAGCTGTTCAGGAACACAC
AGAGCGAGTGCGACAAGAAGCTGATGAAACTTAGGGACGAAATGGCCATG
GACTTGTACGACCTGGAGGAGGAGTACTACACCAGCATTTTTAAGGCAAG
CTTTCTAGACCAT

BO12135.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
MED22-RA 432 CG3034-PA 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
MED22-RA 602 CG3034-RA 78..506 17..445 2145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 928549..928764 230..445 1080 100 Plus
X 23542271 X 928216..928327 17..128 560 100 Plus
X 23542271 X 928382..928485 127..230 520 100 Plus
Blast to na_te.dros performed on 2014-11-27 21:01:56 has no hits.

BO12135.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:33 Download gff for BO12135.complete
Subject Subject Range Query Range Percent Splice Strand
MED22-RA 1..432 17..446 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:19 Download gff for BO12135.complete
Subject Subject Range Query Range Percent Splice Strand
MED22-RA 71..512 7..451 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:09 Download gff for BO12135.complete
Subject Subject Range Query Range Percent Splice Strand
MED22-RA 78..506 17..447 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:33 Download gff for BO12135.complete
Subject Subject Range Query Range Percent Splice Strand
MED22-RA 71..512 7..451 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:16 Download gff for BO12135.complete
Subject Subject Range Query Range Percent Splice Strand
MED22-RA 78..506 17..447 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:16 Download gff for BO12135.complete
Subject Subject Range Query Range Percent Splice Strand
X 928216..928327 17..128 100 -> Plus
X 928384..928485 129..230 100 -> Plus
X 928550..928764 231..447 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:09 Download gff for BO12135.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 822249..822360 17..128 100 -> Plus
arm_X 822417..822518 129..230 100 -> Plus
arm_X 822583..822797 231..447 99   Plus

BO12135.pep Sequence

Translation from 16 to 463

> BO12135.pep
MASGSRTTILPQSKEALLKSYNARLKDDVRSMLENFEEILKLARRESHSQ
ISKTTQCEQDALEMQVRAANMVRAGESLMKLVADLKQYLILNDFHSVNEA
ITNNSQLFRNTQSECDKKLMKLRDEMAMDLYDLEEEYYTSIFKASFLDH

BO12135.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
MED22-PA 143 CG3034-PA 1..143 1..143 711 100 Plus
CG32971-PC 145 CG32971-PC 7..130 15..138 277 46.8 Plus
CG32971-PB 145 CG32971-PB 7..130 15..138 277 46.8 Plus
CG32971-PA 145 CG32971-PA 7..130 15..138 277 46.8 Plus