Clone BO12136 Report

Search the DGRC for BO12136

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:36
Vector:pDNR-Dual
Associated Gene/Transcripttau-RA
Protein status:BO12136.pep: validated full length
Sequenced Size:1117

Clone Sequence Records

BO12136.3prime Sequence

931 bp (756 high quality bases) assembled on 2006-04-20

> BO12136.3prime
ATGGTCTAGAAAGCTTGCGCTTTGTTGATTTAAATTTTCATCAGCGCCAG
AAGCCGTCATGGATGGTAGTGGACTCTGTGTTGGTGGTGTTGTCAGTGCA
ACAGAGTGTTCAACATTTTTCAAATAATCCTTATCATCGAAAATCTTCTT
CTCACCGCCACCGGGCTTGTGCTTTACATTATCCAAAGAGCCAACTTTGC
TTTGTGCCTTAATTTCTAGTTTTTGCGTTTGGATCTTGATGTCTCCGCCA
CCCGGCTGATGTTTCACATTGGCCGTCGAGCCCACCTTCGGCTTGGCCTT
GTCCTTGAAGTCCATCTTCAGGGTCTCGATCTTCTTGTCCCCGCCTCCCG
GCTTGTGGGCGGCATTCTCCAGCGAACCGATTTTGGACTTGGCGTTCCAC
TGCAACTTTGTTGTAACTATCTTCTTCTCGCCGCCCTTTGGCATGTACTT
GTCGTTCTTGGCCTCGATGCGCGGTGCCGCCTTGATGTCGATCTTCTTGG
ACTCGATTTTCACGTGGCCGCCACCCGGCTTATAGGTGGCATTGTCCAGG
GATCCGATCTTGGAGCGTACCGCCTTCAGATTGGGTGAAGGCGCATGTCC
GACTTGTACCTTGTTCATTGGAACTTTCTTCACTGGCTCGGGCTCTGGGG
TCTTGAGGAGCAAGCGGTTCTTGGAGGCGCTGCGCGATTTGGGGGCTGAC
TTGTTCGAGGGCGTGGCACTCGGTGGACGCGACGTGCCCGACTTGTCCGG
CTTCGATGAGGTCGATGTGGGCGTTTTTACGGGCGAACTGGGCGAGTTGG
GTCCGTTGCGATCCTTCTCCTGAGTGGACTCATCCACGCCGCTGTCATTG
TCGCCCTCTTTTTGATCCTGATTACCCCTCGCATTTGCTGGCTTCTGTTG
CAGTTGCTGTTGTTTGCGCTGCTGCTGCTGC

BO12136.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG31057-PA 1086 tau-RA 188..1083 914..19 4455 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
tau-RB 2425 CG45110-RB 718..1630 931..19 4505 99.7 Minus
tau-RA 2243 CG45110-RA 536..1448 931..19 4505 99.7 Minus
tau-RM 2261 CG45110-RM 536..1466 931..19 4315 97.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27646041..27646245 421..625 1025 100 Plus
3R 32079331 3R 27646336..27646527 624..815 960 100 Plus
3R 32079331 3R 27645225..27645412 235..422 940 100 Plus
3R 32079331 3R 27643815..27643975 76..236 805 100 Plus
3R 32079331 3R 27656206..27656279 858..931 310 94.6 Plus
3R 32079331 3R 27641438..27641501 19..82 305 98.4 Plus
3R 32079331 3R 27647564..27647610 813..859 235 100 Plus
Blast to na_te.dros performed on 2015-02-03 07:53:19 has no hits.

BO12136.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:05 Download gff for BO12136.3prime
Subject Subject Range Query Range Percent Splice Strand
tau-PA 213..224 920..931 100   Minus
tau-PA 600..630 890..919 75   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:18 Download gff for BO12136.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31057-PA 171..1086 15..931 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:35:08 Download gff for BO12136.3prime
Subject Subject Range Query Range Percent Splice Strand
tau-RA 536..1451 15..931 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:50:02 Download gff for BO12136.3prime
Subject Subject Range Query Range Percent Splice Strand
tau-RA 536..1451 15..931 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:50:02 Download gff for BO12136.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27641434..27641494 15..75 96 <- Plus
3R 27643815..27643973 76..234 100 <- Plus
3R 27645225..27645410 235..420 100 <- Plus
3R 27646041..27646243 421..623 100 <- Plus
3R 27646336..27646525 624..813 100 <- Plus
3R 27647565..27647608 814..857 100 <- Plus
3R 27656206..27656279 858..931 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:35:08 Download gff for BO12136.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23467156..23467216 15..75 96 <- Plus
arm_3R 23469537..23469695 76..234 100 <- Plus
arm_3R 23470947..23471132 235..420 100 <- Plus
arm_3R 23471763..23471965 421..623 100 <- Plus
arm_3R 23472058..23472247 624..813 100 <- Plus
arm_3R 23473287..23473330 814..857 100 <- Plus
arm_3R 23481928..23482001 858..931 96   Plus

BO12136.5prime Sequence

890 bp (797 high quality bases) assembled on 2006-04-20

> BO12136.5prime
GAAGTTATCAGTCGACATGGCGGATGTCCTGGAGAAAAGCTCACTGCTGG
ATGCTGTGCCACCACTAGGCGACCCCCACCCACCGCTGCCCCACCAGCAG
CTGCAACAGGAAGCAGCAGCAGCAGCAGCAGCAAATGCCGCACCACCAGC
ACCACCGCAGCAGCAACAACCACCACCCCATCAGCTGCAGCAGCAGCAGC
CGCAACAACAGCAACTGCAACAGAAGCCAGCAAATGCGAGGGCTAATCAG
GATCAAAAAGAGGGCGACAATGACAGCGGCGTGGATGAGTCCACTCAGGA
GAAGGATCGCAACGGACCCAACTCGCCCAGTTCGCCCGTAAAAACGCCCA
CATCGACCTCATCGAAGCCGGACAAGTCGGGCACGTCGCGTCCACCGAGT
GCCACGCCCTCGAACAAGTCAGCCCCCAAATCGCGCAGCGCCTCCAAGAA
CCGCTTGCTCCTCAAGACCCCAGAGCCCGAGCCAGTGAAGAAAGTTCCAA
TGAACAAGGTACAAGTCGGACATGCGCCTTCACCCAATCTGAAGGCGGTA
CGCTCCAAGATCGGATCCCTGGACAATGCCACCTATAAGCCGGGTGGCGG
CCACGTGAAAATCGAGTCCAAGAAGATCGACATCAAGGCGGCACCGCGCA
TCGAGGCCAAGAACGACAAGTACATGCCAAAGGGCGGCGAGAAGAAGATA
GTTACAACAAAGTTGCAGTGGAACGCCAAGTCCAAAATCGGTTCGCTGGA
GAATGCCGCCCACAAGCCGGGAGGCGGGGACAAGAAGATCGAGACCCTGA
AGATGGACTTCAAGGACAAGGCCAAGCCGAAGGTGGGCTCGACGGCCAAT
GTGAAACATCAGCCGGGTGGCGGAGACATCAAGATCCAAA

BO12136.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG31057-PA 1086 tau-RA 1..874 17..890 4370 100 Plus
CG7177-PA 7059 CG7177-RA 3205..3246 182..223 160 95.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
tau-RF 1802 CG45110-RF 366..1239 17..890 4370 100 Plus
tau-RC 2459 CG45110-RC 366..1239 17..890 4370 100 Plus
tau-RB 2425 CG45110-RB 548..1421 17..890 4370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 01:52:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27656206..27656449 260..17 1220 100 Minus
3R 32079331 3R 27646041..27646245 697..493 1025 100 Minus
3R 32079331 3R 27646336..27646527 494..303 960 100 Minus
3R 32079331 3R 27645225..27645412 883..696 940 100 Minus
3R 32079331 3R 27647564..27647610 305..259 235 100 Minus
Blast to na_te.dros performed on 2015-02-10 01:52:04 has no hits.

BO12136.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:06 Download gff for BO12136.5prime
Subject Subject Range Query Range Percent Splice Strand
tau-PA 208..234 113..140 82   Plus
tau-PA 605..630 202..228 85   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:19 Download gff for BO12136.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31057-PA 1..871 17..887 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:35:31 Download gff for BO12136.5prime
Subject Subject Range Query Range Percent Splice Strand
tau-RA 361..1236 12..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:03:46 Download gff for BO12136.5prime
Subject Subject Range Query Range Percent Splice Strand
tau-RB 543..1418 12..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:03:46 Download gff for BO12136.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27645221..27645410 698..887 98 <- Minus
3R 27646041..27646243 495..697 100 <- Minus
3R 27646336..27646525 305..494 100 <- Minus
3R 27647565..27647608 261..304 100 <- Minus
3R 27656206..27656454 12..260 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:35:31 Download gff for BO12136.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23470943..23471132 698..887 98 <- Minus
arm_3R 23471763..23471965 495..697 100 <- Minus
arm_3R 23472058..23472247 305..494 100 <- Minus
arm_3R 23473287..23473330 261..304 100 <- Minus
arm_3R 23481928..23482176 12..260 99   Minus

BO12136.complete Sequence

1117 bp assembled on 2006-10-11

GenBank Submission: FJ632325

> BO12136.complete
GAAGTTATCAGTCGACATGGCGGATGTCCTGGAGAAAAGCTCACTGCTGG
ATGCTGTGCCACCACTAGGCGACCCCCACCCACCGCTGCCCCACCAGCAG
CTGCAACAGGAAGCAGCAGCAGCAGCAGCAGCAAATGCCGCACCACCAGC
ACCACCGCAGCAGCAACAACCACCACCCCATCAGCTGCAGCAGCAGCAGC
CGCAACAACAGCAACTGCAACAGAAGCCAGCAAATGCGAGGGCTAATCAG
GATCAAAAAGAGGGCGACAATGACAGCGGCGTGGATGAGTCCACTCAGGA
GAAGGATCGCAACGGACCCAACTCGCCCAGTTCGCCCGTAAAAACGCCCA
CATCGACCTCATCGAAGCCGGACAAGTCGGGCACGTCGCGTCCACCGAGT
GCCACGCCCTCGAACAAGTCAGCCCCCAAATCGCGCAGCGCCTCCAAGAA
CCGCTTGCTCCTCAAGACCCCAGAGCCCGAGCCAGTGAAGAAAGTTCCAA
TGAACAAGGTACAAGTCGGACATGCGCCTTCACCCAATCTGAAGGCGGTA
CGCTCCAAGATCGGATCCCTGGACAATGCCACCTATAAGCCGGGTGGCGG
CCACGTGAAAATCGAGTCCAAGAAGATCGACATCAAGGCGGCACCGCGCA
TCGAGGCCAAGAACGACAAGTACATGCCAAAGGGCGGCGAGAAGAAGATA
GTTACAACAAAGTTGCAGTGGAACGCCAAGTCCAAAATCGGTTCGCTGGA
GAATGCCGCCCACAAGCCGGGAGGCGGGGACAAGAAGATCGAGACCCTGA
AGATGGACTTCAAGGACAAGGCCAAGCCGAAGGTGGGCTCGACGGCCAAT
GTGAAACATCAGCCGGGTGGCGGAGACATCAAGATCCAAACGCAAAAACT
AGAAATTAAGGCACAAAGCAAAGTTGGCTCTTTGGATAATGTAAAGCACA
AGCCCGGTGGCGGTGAGAAGAAGATTTTCGATGATAAGGATTATTTGAAA
AATGTTGAACACTCTGTTGCACTGACAACACCACCAACACAGAGTCCACT
ACCATCCATGACGGCTTCTGGCGCTGATGAAAATTTAAATCAACAAAGCG
CAAGCTTTCTAGACCAT

BO12136.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
tau-RB 1086 CG45110-PB 1..1083 17..1099 5415 100 Plus
tau-RA 1086 CG45110-PA 1..1083 17..1099 5415 100 Plus
tau-RM 1104 CG45110-PM 1..1101 17..1099 5200 98.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
tau-RB 2425 CG45110-RB 548..1630 17..1099 5415 100 Plus
tau-RA 2243 CG45110-RA 366..1448 17..1099 5415 100 Plus
tau-RM 2261 CG45110-RM 366..1466 17..1099 5200 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:04:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27656206..27656449 260..17 1220 100 Minus
3R 32079331 3R 27646041..27646245 697..493 1025 100 Minus
3R 32079331 3R 27646336..27646527 494..303 960 100 Minus
3R 32079331 3R 27645225..27645412 883..696 940 100 Minus
3R 32079331 3R 27643815..27643975 1042..882 805 100 Minus
3R 32079331 3R 27641438..27641501 1099..1036 305 98.4 Minus
3R 32079331 3R 27647564..27647610 305..259 235 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:04:50 has no hits.

BO12136.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:34 Download gff for BO12136.complete
Subject Subject Range Query Range Percent Splice Strand
tau-RA 1..1086 17..1103 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:48:17 Download gff for BO12136.complete
Subject Subject Range Query Range Percent Splice Strand
tau-RA 362..1444 17..1101 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:44 Download gff for BO12136.complete
Subject Subject Range Query Range Percent Splice Strand
tau-RA 366..1448 17..1101 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:34 Download gff for BO12136.complete
Subject Subject Range Query Range Percent Splice Strand
tau-RA 357..1447 12..1103 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:10:20 Download gff for BO12136.complete
Subject Subject Range Query Range Percent Splice Strand
tau-RA 366..1448 17..1101 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:10:20 Download gff for BO12136.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27646336..27646525 305..494 100 <- Minus
3R 27647565..27647608 261..304 100 <- Minus
3R 27656206..27656449 17..260 100   Minus
3R 27641436..27641494 1043..1101 96 <- Minus
3R 27643815..27643973 884..1042 100 <- Minus
3R 27645225..27645410 698..883 100 <- Minus
3R 27646041..27646243 495..697 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:44 Download gff for BO12136.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23467158..23467216 1043..1101 96 <- Minus
arm_3R 23469537..23469695 884..1042 100 <- Minus
arm_3R 23470947..23471132 698..883 100 <- Minus
arm_3R 23471763..23471965 495..697 100 <- Minus
arm_3R 23472058..23472247 305..494 100 <- Minus
arm_3R 23473287..23473330 261..304 100 <- Minus
arm_3R 23481928..23482171 17..260 100   Minus

BO12136.pep Sequence

Translation from 16 to 1117

> BO12136.pep
MADVLEKSSLLDAVPPLGDPHPPLPHQQLQQEAAAAAAANAAPPAPPQQQ
QPPPHQLQQQQPQQQQLQQKPANARANQDQKEGDNDSGVDESTQEKDRNG
PNSPSSPVKTPTSTSSKPDKSGTSRPPSATPSNKSAPKSRSASKNRLLLK
TPEPEPVKKVPMNKVQVGHAPSPNLKAVRSKIGSLDNATYKPGGGHVKIE
SKKIDIKAAPRIEAKNDKYMPKGGEKKIVTTKLQWNAKSKIGSLENAAHK
PGGGDKKIETLKMDFKDKAKPKVGSTANVKHQPGGGDIKIQTQKLEIKAQ
SKVGSLDNVKHKPGGGEKKIFDDKDYLKNVEHSVALTTPPTQSPLPSMTA
SGADENLNQQSASFLDH

BO12136.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
tau-PB 361 CG45110-PB 1..361 1..361 1877 100 Plus
tau-PA 361 CG45110-PA 1..361 1..361 1877 100 Plus
tau-PM 367 CG45110-PM 1..367 1..361 1860 98.4 Plus
tau-PC 349 CG45110-PC 1..342 1..342 1782 100 Plus
tau-PF 403 CG45110-PF 1..342 1..342 1782 100 Plus