Clone Sequence Records
BO12136.3prime Sequence
931 bp (756 high quality bases) assembled on 2006-04-20
> BO12136.3prime
ATGGTCTAGAAAGCTTGCGCTTTGTTGATTTAAATTTTCATCAGCGCCAG
AAGCCGTCATGGATGGTAGTGGACTCTGTGTTGGTGGTGTTGTCAGTGCA
ACAGAGTGTTCAACATTTTTCAAATAATCCTTATCATCGAAAATCTTCTT
CTCACCGCCACCGGGCTTGTGCTTTACATTATCCAAAGAGCCAACTTTGC
TTTGTGCCTTAATTTCTAGTTTTTGCGTTTGGATCTTGATGTCTCCGCCA
CCCGGCTGATGTTTCACATTGGCCGTCGAGCCCACCTTCGGCTTGGCCTT
GTCCTTGAAGTCCATCTTCAGGGTCTCGATCTTCTTGTCCCCGCCTCCCG
GCTTGTGGGCGGCATTCTCCAGCGAACCGATTTTGGACTTGGCGTTCCAC
TGCAACTTTGTTGTAACTATCTTCTTCTCGCCGCCCTTTGGCATGTACTT
GTCGTTCTTGGCCTCGATGCGCGGTGCCGCCTTGATGTCGATCTTCTTGG
ACTCGATTTTCACGTGGCCGCCACCCGGCTTATAGGTGGCATTGTCCAGG
GATCCGATCTTGGAGCGTACCGCCTTCAGATTGGGTGAAGGCGCATGTCC
GACTTGTACCTTGTTCATTGGAACTTTCTTCACTGGCTCGGGCTCTGGGG
TCTTGAGGAGCAAGCGGTTCTTGGAGGCGCTGCGCGATTTGGGGGCTGAC
TTGTTCGAGGGCGTGGCACTCGGTGGACGCGACGTGCCCGACTTGTCCGG
CTTCGATGAGGTCGATGTGGGCGTTTTTACGGGCGAACTGGGCGAGTTGG
GTCCGTTGCGATCCTTCTCCTGAGTGGACTCATCCACGCCGCTGTCATTG
TCGCCCTCTTTTTGATCCTGATTACCCCTCGCATTTGCTGGCTTCTGTTG
CAGTTGCTGTTGTTTGCGCTGCTGCTGCTGC
BO12136.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31057-PA | 1086 | tau-RA | 188..1083 | 914..19 | 4455 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:53:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tau-RB | 2425 | CG45110-RB | 718..1630 | 931..19 | 4505 | 99.7 | Minus |
tau-RA | 2243 | CG45110-RA | 536..1448 | 931..19 | 4505 | 99.7 | Minus |
tau-RM | 2261 | CG45110-RM | 536..1466 | 931..19 | 4315 | 97.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:53:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27646041..27646245 | 421..625 | 1025 | 100 | Plus |
3R | 32079331 | 3R | 27646336..27646527 | 624..815 | 960 | 100 | Plus |
3R | 32079331 | 3R | 27645225..27645412 | 235..422 | 940 | 100 | Plus |
3R | 32079331 | 3R | 27643815..27643975 | 76..236 | 805 | 100 | Plus |
3R | 32079331 | 3R | 27656206..27656279 | 858..931 | 310 | 94.6 | Plus |
3R | 32079331 | 3R | 27641438..27641501 | 19..82 | 305 | 98.4 | Plus |
3R | 32079331 | 3R | 27647564..27647610 | 813..859 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:53:19 has no hits.
BO12136.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:05 Download gff for
BO12136.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tau-PA | 213..224 | 920..931 | 100 | | Minus |
tau-PA | 600..630 | 890..919 | 75 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:18 Download gff for
BO12136.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31057-PA | 171..1086 | 15..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:35:08 Download gff for
BO12136.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tau-RA | 536..1451 | 15..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:50:02 Download gff for
BO12136.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tau-RA | 536..1451 | 15..931 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:50:02 Download gff for
BO12136.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27641434..27641494 | 15..75 | 96 | <- | Plus |
3R | 27643815..27643973 | 76..234 | 100 | <- | Plus |
3R | 27645225..27645410 | 235..420 | 100 | <- | Plus |
3R | 27646041..27646243 | 421..623 | 100 | <- | Plus |
3R | 27646336..27646525 | 624..813 | 100 | <- | Plus |
3R | 27647565..27647608 | 814..857 | 100 | <- | Plus |
3R | 27656206..27656279 | 858..931 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:35:08 Download gff for
BO12136.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23467156..23467216 | 15..75 | 96 | <- | Plus |
arm_3R | 23469537..23469695 | 76..234 | 100 | <- | Plus |
arm_3R | 23470947..23471132 | 235..420 | 100 | <- | Plus |
arm_3R | 23471763..23471965 | 421..623 | 100 | <- | Plus |
arm_3R | 23472058..23472247 | 624..813 | 100 | <- | Plus |
arm_3R | 23473287..23473330 | 814..857 | 100 | <- | Plus |
arm_3R | 23481928..23482001 | 858..931 | 96 | | Plus |
BO12136.5prime Sequence
890 bp (797 high quality bases) assembled on 2006-04-20
> BO12136.5prime
GAAGTTATCAGTCGACATGGCGGATGTCCTGGAGAAAAGCTCACTGCTGG
ATGCTGTGCCACCACTAGGCGACCCCCACCCACCGCTGCCCCACCAGCAG
CTGCAACAGGAAGCAGCAGCAGCAGCAGCAGCAAATGCCGCACCACCAGC
ACCACCGCAGCAGCAACAACCACCACCCCATCAGCTGCAGCAGCAGCAGC
CGCAACAACAGCAACTGCAACAGAAGCCAGCAAATGCGAGGGCTAATCAG
GATCAAAAAGAGGGCGACAATGACAGCGGCGTGGATGAGTCCACTCAGGA
GAAGGATCGCAACGGACCCAACTCGCCCAGTTCGCCCGTAAAAACGCCCA
CATCGACCTCATCGAAGCCGGACAAGTCGGGCACGTCGCGTCCACCGAGT
GCCACGCCCTCGAACAAGTCAGCCCCCAAATCGCGCAGCGCCTCCAAGAA
CCGCTTGCTCCTCAAGACCCCAGAGCCCGAGCCAGTGAAGAAAGTTCCAA
TGAACAAGGTACAAGTCGGACATGCGCCTTCACCCAATCTGAAGGCGGTA
CGCTCCAAGATCGGATCCCTGGACAATGCCACCTATAAGCCGGGTGGCGG
CCACGTGAAAATCGAGTCCAAGAAGATCGACATCAAGGCGGCACCGCGCA
TCGAGGCCAAGAACGACAAGTACATGCCAAAGGGCGGCGAGAAGAAGATA
GTTACAACAAAGTTGCAGTGGAACGCCAAGTCCAAAATCGGTTCGCTGGA
GAATGCCGCCCACAAGCCGGGAGGCGGGGACAAGAAGATCGAGACCCTGA
AGATGGACTTCAAGGACAAGGCCAAGCCGAAGGTGGGCTCGACGGCCAAT
GTGAAACATCAGCCGGGTGGCGGAGACATCAAGATCCAAA
BO12136.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31057-PA | 1086 | tau-RA | 1..874 | 17..890 | 4370 | 100 | Plus |
CG7177-PA | 7059 | CG7177-RA | 3205..3246 | 182..223 | 160 | 95.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:52:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tau-RF | 1802 | CG45110-RF | 366..1239 | 17..890 | 4370 | 100 | Plus |
tau-RC | 2459 | CG45110-RC | 366..1239 | 17..890 | 4370 | 100 | Plus |
tau-RB | 2425 | CG45110-RB | 548..1421 | 17..890 | 4370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 01:52:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27656206..27656449 | 260..17 | 1220 | 100 | Minus |
3R | 32079331 | 3R | 27646041..27646245 | 697..493 | 1025 | 100 | Minus |
3R | 32079331 | 3R | 27646336..27646527 | 494..303 | 960 | 100 | Minus |
3R | 32079331 | 3R | 27645225..27645412 | 883..696 | 940 | 100 | Minus |
3R | 32079331 | 3R | 27647564..27647610 | 305..259 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 01:52:04 has no hits.
BO12136.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:06 Download gff for
BO12136.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tau-PA | 208..234 | 113..140 | 82 | | Plus |
tau-PA | 605..630 | 202..228 | 85 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:19 Download gff for
BO12136.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31057-PA | 1..871 | 17..887 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:35:31 Download gff for
BO12136.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tau-RA | 361..1236 | 12..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:03:46 Download gff for
BO12136.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tau-RB | 543..1418 | 12..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:03:46 Download gff for
BO12136.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27645221..27645410 | 698..887 | 98 | <- | Minus |
3R | 27646041..27646243 | 495..697 | 100 | <- | Minus |
3R | 27646336..27646525 | 305..494 | 100 | <- | Minus |
3R | 27647565..27647608 | 261..304 | 100 | <- | Minus |
3R | 27656206..27656454 | 12..260 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:35:31 Download gff for
BO12136.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23470943..23471132 | 698..887 | 98 | <- | Minus |
arm_3R | 23471763..23471965 | 495..697 | 100 | <- | Minus |
arm_3R | 23472058..23472247 | 305..494 | 100 | <- | Minus |
arm_3R | 23473287..23473330 | 261..304 | 100 | <- | Minus |
arm_3R | 23481928..23482176 | 12..260 | 99 | | Minus |
BO12136.complete Sequence
1117 bp assembled on 2006-10-11
GenBank Submission: FJ632325
> BO12136.complete
GAAGTTATCAGTCGACATGGCGGATGTCCTGGAGAAAAGCTCACTGCTGG
ATGCTGTGCCACCACTAGGCGACCCCCACCCACCGCTGCCCCACCAGCAG
CTGCAACAGGAAGCAGCAGCAGCAGCAGCAGCAAATGCCGCACCACCAGC
ACCACCGCAGCAGCAACAACCACCACCCCATCAGCTGCAGCAGCAGCAGC
CGCAACAACAGCAACTGCAACAGAAGCCAGCAAATGCGAGGGCTAATCAG
GATCAAAAAGAGGGCGACAATGACAGCGGCGTGGATGAGTCCACTCAGGA
GAAGGATCGCAACGGACCCAACTCGCCCAGTTCGCCCGTAAAAACGCCCA
CATCGACCTCATCGAAGCCGGACAAGTCGGGCACGTCGCGTCCACCGAGT
GCCACGCCCTCGAACAAGTCAGCCCCCAAATCGCGCAGCGCCTCCAAGAA
CCGCTTGCTCCTCAAGACCCCAGAGCCCGAGCCAGTGAAGAAAGTTCCAA
TGAACAAGGTACAAGTCGGACATGCGCCTTCACCCAATCTGAAGGCGGTA
CGCTCCAAGATCGGATCCCTGGACAATGCCACCTATAAGCCGGGTGGCGG
CCACGTGAAAATCGAGTCCAAGAAGATCGACATCAAGGCGGCACCGCGCA
TCGAGGCCAAGAACGACAAGTACATGCCAAAGGGCGGCGAGAAGAAGATA
GTTACAACAAAGTTGCAGTGGAACGCCAAGTCCAAAATCGGTTCGCTGGA
GAATGCCGCCCACAAGCCGGGAGGCGGGGACAAGAAGATCGAGACCCTGA
AGATGGACTTCAAGGACAAGGCCAAGCCGAAGGTGGGCTCGACGGCCAAT
GTGAAACATCAGCCGGGTGGCGGAGACATCAAGATCCAAACGCAAAAACT
AGAAATTAAGGCACAAAGCAAAGTTGGCTCTTTGGATAATGTAAAGCACA
AGCCCGGTGGCGGTGAGAAGAAGATTTTCGATGATAAGGATTATTTGAAA
AATGTTGAACACTCTGTTGCACTGACAACACCACCAACACAGAGTCCACT
ACCATCCATGACGGCTTCTGGCGCTGATGAAAATTTAAATCAACAAAGCG
CAAGCTTTCTAGACCAT
BO12136.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:04:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tau-RB | 1086 | CG45110-PB | 1..1083 | 17..1099 | 5415 | 100 | Plus |
tau-RA | 1086 | CG45110-PA | 1..1083 | 17..1099 | 5415 | 100 | Plus |
tau-RM | 1104 | CG45110-PM | 1..1101 | 17..1099 | 5200 | 98.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:04:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tau-RB | 2425 | CG45110-RB | 548..1630 | 17..1099 | 5415 | 100 | Plus |
tau-RA | 2243 | CG45110-RA | 366..1448 | 17..1099 | 5415 | 100 | Plus |
tau-RM | 2261 | CG45110-RM | 366..1466 | 17..1099 | 5200 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:04:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27656206..27656449 | 260..17 | 1220 | 100 | Minus |
3R | 32079331 | 3R | 27646041..27646245 | 697..493 | 1025 | 100 | Minus |
3R | 32079331 | 3R | 27646336..27646527 | 494..303 | 960 | 100 | Minus |
3R | 32079331 | 3R | 27645225..27645412 | 883..696 | 940 | 100 | Minus |
3R | 32079331 | 3R | 27643815..27643975 | 1042..882 | 805 | 100 | Minus |
3R | 32079331 | 3R | 27641438..27641501 | 1099..1036 | 305 | 98.4 | Minus |
3R | 32079331 | 3R | 27647564..27647610 | 305..259 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:04:50 has no hits.
BO12136.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:34 Download gff for
BO12136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tau-RA | 1..1086 | 17..1103 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:48:17 Download gff for
BO12136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tau-RA | 362..1444 | 17..1101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:44 Download gff for
BO12136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tau-RA | 366..1448 | 17..1101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:34 Download gff for
BO12136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tau-RA | 357..1447 | 12..1103 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:10:20 Download gff for
BO12136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tau-RA | 366..1448 | 17..1101 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:10:20 Download gff for
BO12136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27646336..27646525 | 305..494 | 100 | <- | Minus |
3R | 27647565..27647608 | 261..304 | 100 | <- | Minus |
3R | 27656206..27656449 | 17..260 | 100 | | Minus |
3R | 27641436..27641494 | 1043..1101 | 96 | <- | Minus |
3R | 27643815..27643973 | 884..1042 | 100 | <- | Minus |
3R | 27645225..27645410 | 698..883 | 100 | <- | Minus |
3R | 27646041..27646243 | 495..697 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:44 Download gff for
BO12136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23467158..23467216 | 1043..1101 | 96 | <- | Minus |
arm_3R | 23469537..23469695 | 884..1042 | 100 | <- | Minus |
arm_3R | 23470947..23471132 | 698..883 | 100 | <- | Minus |
arm_3R | 23471763..23471965 | 495..697 | 100 | <- | Minus |
arm_3R | 23472058..23472247 | 305..494 | 100 | <- | Minus |
arm_3R | 23473287..23473330 | 261..304 | 100 | <- | Minus |
arm_3R | 23481928..23482171 | 17..260 | 100 | | Minus |
BO12136.pep Sequence
Translation from 16 to 1117
> BO12136.pep
MADVLEKSSLLDAVPPLGDPHPPLPHQQLQQEAAAAAAANAAPPAPPQQQ
QPPPHQLQQQQPQQQQLQQKPANARANQDQKEGDNDSGVDESTQEKDRNG
PNSPSSPVKTPTSTSSKPDKSGTSRPPSATPSNKSAPKSRSASKNRLLLK
TPEPEPVKKVPMNKVQVGHAPSPNLKAVRSKIGSLDNATYKPGGGHVKIE
SKKIDIKAAPRIEAKNDKYMPKGGEKKIVTTKLQWNAKSKIGSLENAAHK
PGGGDKKIETLKMDFKDKAKPKVGSTANVKHQPGGGDIKIQTQKLEIKAQ
SKVGSLDNVKHKPGGGEKKIFDDKDYLKNVEHSVALTTPPTQSPLPSMTA
SGADENLNQQSASFLDH
BO12136.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tau-PB | 361 | CG45110-PB | 1..361 | 1..361 | 1877 | 100 | Plus |
tau-PA | 361 | CG45110-PA | 1..361 | 1..361 | 1877 | 100 | Plus |
tau-PM | 367 | CG45110-PM | 1..367 | 1..361 | 1860 | 98.4 | Plus |
tau-PC | 349 | CG45110-PC | 1..342 | 1..342 | 1782 | 100 | Plus |
tau-PF | 403 | CG45110-PF | 1..342 | 1..342 | 1782 | 100 | Plus |