Clone BO12137 Report

Search the DGRC for BO12137

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCG2941-RA
Protein status:BO12137.pep: Imported from assembly
Sequenced Size:2767

Clone Sequence Records

BO12137.complete Sequence

2767 bp assembled on 2009-09-17

GenBank Submission: FJ632326

> BO12137.complete
GAAGTTATCAGTCGACATGATAACTGCTAAGAAGCACCCGCTGGACAATT
GCCAATTGTTTGTCCAGCTGAAGAAGTTATTTCATGACTACAACGAGAAG
GTCCAGCGTCTGAAGGACATGATTTACTGGAGTGGAAACGATGAGCACAT
TGCGAAGATCTGCGACCAAGTGACGGACCTGCTGGTGGAGCACGATCTAA
TCATACAGCCGCCAGACACAATGGATCCTTGTGCTATGAATCACCTGCGT
GGACTACTGGTGTACCTGGTGCTGAACACTGCACACGATGATATCCAGTG
CGAATCGCAGTGGAGCGCCAATGTCATGCATTTGTGTAACCAGCTGCCGC
CTATCCCACTGTTCTTGACCATCGCAATAGCCGTTAACTGCTGTCTCATG
GAGCCGCTGGAGGAATTCCTTGCTTGTGGACCCCGCTGGCTGACCATCCA
GTATTTTGAGGCATTCAATGAGGCTCTGTCGGTCATTAATTCAGATTGCG
TGGAAACACTACCGCTGCTCTCTGCCGCCCTCAGAGCAGCCGGTCGCGCA
ATTGTCAACTGCAATTTGCCCGCAGAAAATAAGCAACTGCTGCGCCAGAT
AGCCTGCATGGAACATCGTCATATCTTGGACTCTAAACAGCGCCTCCATA
CGCTGCCGCGTCCATCCACTCGAAAGATTTACCTGGCCAAGGCTATGGAT
CACCTTATAGAAGTCCTTTTGTATACCCTCAATGATCCATTAAAGCGGGA
GAAACCAAATTGCTTCGCCGTCTACAGCCAAATAACCGAGGACATCAGTG
ACAGCAACTCAAGCGATCCCATGCCTGATCTGCGGCATTTCGCCCAAATA
CTGCTAGACGTTCTGCAGCGTATCTTTCAGCTCGTTAGCGTAGACACGTA
TATGTATTGGCATGAAATGAAATCGAAAAGTGCTTTGTATAACTGCCAGG
AGCTAATCTGTAGACAGACGGCAGAATTGCTTAAAGTACTCCAATCAGAT
AAGTTGCTCGGAGAGCATCCGGTTTGCAAGCAGATGCAGAGCTTTGCGGA
TGCAGCAAAAACATTGGAGCAGCGCGTTGCCGAGATGAGAATCGGTGAAC
TCTTGGCCTTTATCGATTCCGGTATGGCCACCAATGAGGAGTTGCTCGCC
GGGCTGGACAATCTCTTTAGCCGCTTCATAGCCTTTGGCAGCGATGAGTG
CCTGGAAACGATGGCAAATCATTTAATTATGCTCACCAAGAAACATGCCC
AGATAATACTCAGTTTCCTGGGTCAGGTGGTGGAGTCCGAAATGGTGGTC
GAGGACGAGGGCATATCCGTTACGGAAGTAAATCAGGGGGACGACGAGGA
CGAGACCTCGTCCAACGATGATTACGAAGAGCTGCTAAGCCTAGTACTGC
GTCCCTTATTTATGCAATTAAATGTCGAGGACAAGATGGAAGTACTGCTA
TTACGCGATGAGCAAAACGTTACCCAAGGATTTAATTTCAAGGCTCCCGA
TCATCGGGAGCGTCGCATACGCTTCTTTAATCAATTGGATTATAATAAGC
GCTTCCCGATAACCGAATTTTTAGTACTGTGCTTTGAGAACGCAAGACAG
ACCTGGATTGATTTCTCCCACTTGGGCGTGACGCATACTCGCTTCTCGAA
GCTATTCTGGCACATAGCTCAGTCTTGTCCCAAGCATGCTGCTTTTCATA
TTTCCGCCTGTGCCGATAACATCTTGGTGAACGAGCAACTACTTCAAAAG
CCGTATGCCTTGCAGTTTACACTCTACCTATATGGCCACCGACAGATCCT
CAACGGTCTCTACACGTCAGCGCGACAACTGTGCGTTAGTTTGAAAGACG
GACGGTGTCCCTACGGAGAGGATGAGCTTAGGCAGGCGCAAAATAGGTTC
CTAGACGCGTGTGCCTACGGTTTGGCCAAGTTTATAGAGCCCATGAACTT
GCCCAGCTTGCAGTTAATCTTGAAACTGCTCAAGCAGATTAGTCTGGGTG
AAAGCAATCTAATCACCCGAGGCACTGCAGAGTTAAATGCACTCGAAAAG
GAGCACCCGAAATTGGAGAACGGAGACGATGCACCAGCTGTCAAGGTGGC
CAAGCACTACACATATCTGCATGCCAGTTTGCCAGAGTGGCGTTTGAAAC
ACTGGAAGCTGATCTCGCATGTCATGAAAACCATTGATGCCCTACGCTGG
GACTTGGCCACCTTTGAAGATTTCCGGGTGGATAATTTAGAACTGGCGGT
GTGGTATTGGCAGGACGGTCTGTCTCATCTGACATTCCTAGGCACTGAAT
TCCGCCAGAGGATCTTAAACCAAGTGAGCAAATTGAAGCACAAGGACTTT
TGGATCATCTACCTTAAAGAAGACACCTTAAAGGACACACGCTCCTTTCT
CAAATTGCTAACTCAGTCCAGTGCACAGGAGGCTAACGATCTCTTCAACA
AGCTCCTTAAAAAAAGGGCCGATTGTGCTGTTATGGGCGATCTTAGCGAT
GCAGTGGTCAAGGTGAACAGCGAGTCCGCTTTCATGGCCTTTAGATTCCT
ATTTCGAGAATATTTGATCGCCTTCCGGAGCCACGCCAAACACAATAAGA
CCATCACGAAGCGCCAGCATTGGGATCATTTGATGGCCGTTGTGGCCAAG
GCTCCATTCTCCATTCGCAACGAGATTATGGAGCTAGCTAGTAAAGCCTT
CGCTGTGCGATTCGGCATAAATATCCAGGAACAGCAGGCGGCCAAGTGTG
CAAGCTTTCTAGACCAT

BO12137.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG2941-RB 2736 CG2941-PB 1..2733 17..2749 13665 100 Plus
CG2941-RA 2736 CG2941-PA 1..2733 17..2749 13665 100 Plus
CG32786-RB 2736 CG32786-PB 1..2733 17..2749 12945 98.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG2941-RB 3954 CG2941-RB 306..3038 17..2749 13665 100 Plus
CG2941-RA 3378 CG2941-RA 306..3038 17..2749 13665 100 Plus
CG32786-RB 3307 CG32786-RB 214..2946 17..2749 12945 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3936992..3939155 134..2297 10820 100 Plus
X 23542271 X 3941230..3943393 134..2297 10430 98.8 Plus
X 23542271 X 3945426..3947589 134..2297 10385 98.7 Plus
X 23542271 X 3939210..3939666 2293..2749 2270 99.8 Plus
X 23542271 X 3943448..3943904 2293..2749 2135 97.8 Plus
X 23542271 X 3947644..3948100 2293..2749 2120 97.6 Plus
X 23542271 X 3936822..3936940 17..135 595 100 Plus
X 23542271 X 3941060..3941178 17..135 400 89.1 Plus
X 23542271 X 3945256..3945374 17..135 400 89.1 Plus
Blast to na_te.dros performed on 2014-11-28 01:41:18 has no hits.

BO12137.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-17 15:20:17 Download gff for BO12137.complete
Subject Subject Range Query Range Percent Splice Strand
CG2941-RA 303..3035 17..2751 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:54:46 Download gff for BO12137.complete
Subject Subject Range Query Range Percent Splice Strand
CG2941-RA 303..3035 17..2751 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:59:01 Download gff for BO12137.complete
Subject Subject Range Query Range Percent Splice Strand
CG2941-RA 303..3035 17..2751 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:32 Download gff for BO12137.complete
Subject Subject Range Query Range Percent Splice Strand
CG2941-RA 306..3038 17..2751 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:32 Download gff for BO12137.complete
Subject Subject Range Query Range Percent Splice Strand
X 3936822..3936939 17..134 100 -> Plus
X 3936993..3939155 135..2297 100 -> Plus
X 3939215..3939666 2298..2751 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:54:46 Download gff for BO12137.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3830855..3830972 17..134 100 -> Plus
arm_X 3831026..3833188 135..2297 100 -> Plus
arm_X 3833248..3833699 2298..2751 99   Plus

BO12137.3prime Sequence

788 bp (721 high quality bases) assembled on 2006-04-20

> BO12137.3prime
ATGGTCTAGAAAGCTTGCACACTTGGCCGCCTGCTGTTCCTGGATATTTA
TGCCGAATCGCACAGCGAAGGCTTTACTAGCTAGCTCCATAATCTCGTTG
CGAATGGAGAATGGAGCCTTGGCCACAACGGCCATCAAATGATCCCAATG
CTGGCGCTTCGTGATGGTCTTATTGTGTTTGGCGTGGCTCCGGAAGGCGA
TCAAATATTCTCGAAATAGGAATCTAAAGGCCATGAAAGCGGACTCGCTG
TTCACCTTGACCACTGCATCGCTAAGATCGCCCATAACAGCACAATCGGC
CCTTTTTTTAAGGAGCTTGTTGAAGAGATCGTTAGCCTCCTGTGCACTGG
ACTGAGTTAGCAATTTGAGAAAGGAGCGTGTGTCCTTTAAGGTGTCTTCT
TTAAGGTAGATGATCCAAAAGTCCTTGTGCTTCAATTTGCTCACTTGGTT
TAAGATCCTCTGGCGGAATTCAGTGCCTAGGAATGTCAGATGAGACAGAC
CGTCCTGCCAATACCACACCGCCAGTTCTAAATTATCCACCCGGAAATCT
TCAAAGGTGGCCAAGTCCCAGCGTAGGGCATCAATGGTTTTCATGACATG
CGAGATCAGCTTCCAGTGTTTCAAACGCCACTCTGGCAAACTGGCATGCA
GATATGTGTAGTGCTTGGCCACCTTGACAGCTGGTGCATCGTCTCCGTTC
TCCAATTTCGGGTGCTCCTTTTCGAGTGCATTTAACTCTGCAGTGCCTCG
CGTGATTAGATTGCTTTCACCCCGACTAATCTGCTTGA

BO12137.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG2941-PA 2736 CG2941-RA 1964..2733 788..19 3800 99.7 Minus
CG32786-PA 2706 CG32786-RA 2290..2703 432..19 1995 99.2 Minus
CG32783-PA 2706 CG32783-RA 2290..2703 432..19 1970 99 Minus
CG32786-PA 2706 CG32786-RA 1964..2251 788..501 1340 98.6 Minus
CG32783-PA 2706 CG32783-RA 1964..2251 788..501 1340 98.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG2941-RB 3954 CG2941-RB 2269..3038 788..19 3820 99.7 Minus
CG2941-RA 3378 CG2941-RA 2269..3038 788..19 3820 99.7 Minus
CG32786-RB 3307 CG32786-RB 2177..2946 788..19 3655 98.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3939210..3939666 475..19 2270 99.8 Minus
X 23542271 X 3943448..3943904 475..19 2135 97.8 Minus
X 23542271 X 3947644..3948100 475..19 2120 97.6 Minus
X 23542271 X 3938838..3939155 788..471 1560 99.4 Minus
X 23542271 X 3943076..3943393 788..471 1530 98.7 Minus
X 23542271 X 3947272..3947589 788..471 1530 98.7 Minus
Blast to na_te.dros performed on 2015-02-12 10:38:52 has no hits.

BO12137.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:07 Download gff for BO12137.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2941-PA 1965..2736 15..787 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:20 Download gff for BO12137.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2941-PA 1965..2736 15..787 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:21:16 Download gff for BO12137.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2941-RA 2267..3039 14..787 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:30:47 Download gff for BO12137.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2941-RA 2270..3042 14..787 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:30:47 Download gff for BO12137.3prime
Subject Subject Range Query Range Percent Splice Strand
X 3938839..3939155 471..787 99 -> Minus
X 3939215..3939670 14..470 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:21:16 Download gff for BO12137.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3832872..3833188 471..787 99 -> Minus
arm_X 3833248..3833703 14..470 99 -> Minus

BO12137.5prime Sequence

936 bp (803 high quality bases) assembled on 2006-04-20

> BO12137.5prime
GAAGTTATCAGTCGACATGATAACTGCTAAGAAGCACCCGCTGGACAATT
GCCAATTGTTTGTCCAGCTGAAGAAGTTATTTCATGACTACAACGAGAAG
GTCCAGCGTCTGAAGGACATGATTTACTGGAGTGGAAACGATGAGCACAT
TGCGAAGATCTGCGACCAAGTGACGGACCTGCTGGTGGAGCACGATCTAA
TCATACAGCCGCCAGACACAATGGATCCTTGTGCTATGAATCACCTGCGT
GGACTACTGGTGTACCTGGTGCTGAACACTGCACACGATGATATCCAGTG
CGAATCGCAGTGGAGCGCCAATGTCATGCATTTGTGTAACCAGCTGCCGC
CTATCCCACTGTTCTTGACCATCGCAATAGCCGTTAACTGCTGTCTCATG
GAGCCGCTGGAGGAATTCCTTGCTTGTGGACCCCGCTGGCTGACCATCCA
GTATTTTGAGGCATTCAATGAGGCTCTGTCGGTCATTAATTCAGATTGCG
TGGAAACACTACCGCTGCTCTCTGCCGCCCTCAGAGCAGCCGGTCGCGCA
ATTGTCAACTGCAATTTGCCCGCAGAAAATAAGCAACTGCTGCGCCAGAT
AGCCTGCATGGAACATCGTCATATCTTGGACTCTAAACAGCGCCTCCATA
CGCTGCCGCGTCCATCCACTCGAAAGATTTACCTGGCCAAGGCTATGGAT
CACCTTATAGAAGTCCTTTTGTATACCCTCAATGATCCATTAAAGCGGGA
GAAACCAAATTGCTTCGCCGTCTACAGCCAAATAACCGAGGACATCAGTG
ACAGCAACTCAAGCGATCCCATGCCTGATCTGCGGCATTTCGCCCAAATA
CTGCTAGACGTTCTGCAGCGTATCTTTCAGCTCGTTAGCGTAGACACGTA
TATGTATTGGCATGAAATGAAAACCGAAAAGTGCTT

BO12137.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG2941-PA 2736 CG2941-RA 1..906 17..922 4530 100 Plus
CG32786-PA 2706 CG32786-RA 287..906 303..922 3075 99.8 Plus
CG32783-PA 2706 CG32783-RA 287..906 303..922 3050 99.6 Plus
CG32786-PA 2706 CG32786-RA 92..272 108..288 730 96.1 Plus
CG32783-PA 2706 CG32783-RA 92..272 108..288 730 96.1 Plus
CG32786-PA 2706 CG32786-RA 1..80 17..96 250 92.5 Plus
CG32783-PA 2706 CG32783-RA 1..80 17..96 250 92.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG2941-RB 3954 CG2941-RB 306..1224 17..936 4560 99.8 Plus
CG2941-RA 3378 CG2941-RA 306..1224 17..936 4560 99.8 Plus
CG32786-RB 3307 CG32786-RB 214..1132 17..936 4185 97.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3936992..3937793 134..936 3950 99.8 Plus
X 23542271 X 3941230..3942031 134..936 3770 98.3 Plus
X 23542271 X 3945426..3946227 134..936 3755 98.1 Plus
X 23542271 X 3936822..3936940 17..135 595 100 Plus
X 23542271 X 3941060..3941178 17..135 400 89.1 Plus
X 23542271 X 3945256..3945374 17..135 400 89.1 Plus
Blast to na_te.dros performed on 2015-02-04 03:30:16 has no hits.

BO12137.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:08 Download gff for BO12137.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2941-PA 1..919 17..936 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:22 Download gff for BO12137.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2941-PA 1..919 17..936 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:54:08 Download gff for BO12137.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2941-RA 296..1221 9..936 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:29:37 Download gff for BO12137.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2941-RA 299..1224 9..936 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:29:37 Download gff for BO12137.5prime
Subject Subject Range Query Range Percent Splice Strand
X 3936815..3936939 9..134 97 -> Plus
X 3936993..3937793 135..936 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:54:08 Download gff for BO12137.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3830848..3830972 9..134 97 -> Plus
arm_X 3831026..3831826 135..936 99   Plus

BO12137.pep Sequence

Translation from 16 to 2767

> BO12137.pep
MITAKKHPLDNCQLFVQLKKLFHDYNEKVQRLKDMIYWSGNDEHIAKICD
QVTDLLVEHDLIIQPPDTMDPCAMNHLRGLLVYLVLNTAHDDIQCESQWS
ANVMHLCNQLPPIPLFLTIAIAVNCCLMEPLEEFLACGPRWLTIQYFEAF
NEALSVINSDCVETLPLLSAALRAAGRAIVNCNLPAENKQLLRQIACMEH
RHILDSKQRLHTLPRPSTRKIYLAKAMDHLIEVLLYTLNDPLKREKPNCF
AVYSQITEDISDSNSSDPMPDLRHFAQILLDVLQRIFQLVSVDTYMYWHE
MKSKSALYNCQELICRQTAELLKVLQSDKLLGEHPVCKQMQSFADAAKTL
EQRVAEMRIGELLAFIDSGMATNEELLAGLDNLFSRFIAFGSDECLETMA
NHLIMLTKKHAQIILSFLGQVVESEMVVEDEGISVTEVNQGDDEDETSSN
DDYEELLSLVLRPLFMQLNVEDKMEVLLLRDEQNVTQGFNFKAPDHRERR
IRFFNQLDYNKRFPITEFLVLCFENARQTWIDFSHLGVTHTRFSKLFWHI
AQSCPKHAAFHISACADNILVNEQLLQKPYALQFTLYLYGHRQILNGLYT
SARQLCVSLKDGRCPYGEDELRQAQNRFLDACAYGLAKFIEPMNLPSLQL
ILKLLKQISLGESNLITRGTAELNALEKEHPKLENGDDAPAVKVAKHYTY
LHASLPEWRLKHWKLISHVMKTIDALRWDLATFEDFRVDNLELAVWYWQD
GLSHLTFLGTEFRQRILNQVSKLKHKDFWIIYLKEDTLKDTRSFLKLLTQ
SSAQEANDLFNKLLKKRADCAVMGDLSDAVVKVNSESAFMAFRFLFREYL
IAFRSHAKHNKTITKRQHWDHLMAVVAKAPFSIRNEIMELASKAFAVRFG
INIQEQQAAKCASFLDH

BO12137.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG2941-PB 911 CG2941-PB 1..911 1..911 4764 100 Plus
CG2941-PA 911 CG2941-PA 1..911 1..911 4764 100 Plus
CG32786-PB 911 CG32786-PB 1..911 1..911 4615 96.8 Plus
CG32783-PB 911 CG32783-PB 1..911 1..911 4598 96.4 Plus