Clone Sequence Records
BO12139.3prime Sequence
932 bp (801 high quality bases) assembled on 2006-04-20
> BO12139.3prime
ATGGTCTAGAAAGCTTGCCAAGTTCCAGTCATCGGGCCCCGACTCCTGGC
GTATCACGGGCGGGGTTAGCGGAGCTCTCGGTGCACCGGGCACAGGAGTG
GGCACCAAAGGCGCAGCTCCGCGCAGCGAGCTGCCGTAATAAGGCGGCGG
CCGATGGCTATTAATGCTCGGCGCATTGGAGCTGTGCGTTGACGAGGCGG
AGGAATCGCGCACCCGACCCGCATCGAAAACGGGCGCCTGGGCGTAGCGA
TGCGGATGTCCCAGCTGCGGTGTCTGTGATCGCGAATGCGAGCGATCACG
TCGCATTAGCTGCTCCTGTTGCAGCCGTTGCTGCTGCACATATTGCTGCT
TGCGCTGCTTGAGCAGTTGCTCGTCCCGCTGGAGCAAACGCTGTCGCTGC
TGCAGCTCATACTGCTGCCGCTGCATGGCACTCAGTCGATTGGCCTTGCT
CCACGGATTGCCGCCGAAGCAGAGGTTCGATATGAAGACCACCGGCGAGA
AGAGACGCAGGGAGACCTCAGTGGTGTCCACAATGGGTTTTGCCTCATTG
CCGCTGAGTATGAACAGGGGAAAAAAGATGGAGAAGATGCAGCTACTGAC
GATCACCGAGCTGGACAGATTTGTCAGCACGGTGAGCGGTATTCCGAAGC
CGAAGAAATAGGGCCAGTTCTTTTCAATGTACGTGAGTCGTCTATGTAGC
TCCCAGCCCATGTTGAACCACTTGTACTCGAAGGAGTACAGTGAGTAGAG
CAGGCACAGATGCACGAAGCACAGCGAGGAGCCCACATATTTCACAGGCA
CTAGGTTAACCAGCATGCTCTGTACCAGGAACAGCATTTGCACCCACATG
CTGAATAGGAAGTCGGCCACCAGTTTGCTAATTCCAGGGATTAGCTGCGG
GGCGACCCCTTCTCACGCGATACGCGGCATTG
BO12139.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15626-PB | 1494 | CG15626-RB | 609..1491 | 901..19 | 4365 | 99.7 | Minus |
CG15626-PA | 1494 | CG15626-RA | 609..1491 | 901..19 | 4365 | 99.7 | Minus |
CG15626-PB | 1494 | CG15626-RB | 579..611 | 932..900 | 140 | 96.9 | Minus |
CG15626-PA | 1494 | CG15626-RA | 579..611 | 932..900 | 140 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:43:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tank-RA | 2077 | CG15626-RA | 757..1669 | 932..19 | 4500 | 99.6 | Minus |
tank-RB | 2213 | CG15626-RB | 893..1805 | 932..19 | 4500 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:43:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4835743..4836248 | 19..524 | 2515 | 99.8 | Plus |
2L | 23513712 | 2L | 4836483..4836893 | 521..932 | 1965 | 99 | Plus |
Blast to na_te.dros performed 2015-02-10 16:43:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2499 | 423..249 | 245 | 60 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6860 | 423..309 | 224 | 66.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6841 | 424..307 | 221 | 65.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6653..6966 | 551..224 | 213 | 56.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6833 | 417..303 | 208 | 66.1 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1029..1163 | 454..312 | 173 | 62.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..6839 | 393..234 | 169 | 57.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6794 | 374..300 | 168 | 69.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2523 | 424..269 | 166 | 59.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6812 | 381..303 | 163 | 69.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6814..6929 | 424..315 | 152 | 62.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2394 | 385..300 | 149 | 66.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2417..2532 | 424..309 | 139 | 57.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1515..1590 | 375..306 | 133 | 67.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2760..2883 | 426..300 | 133 | 57.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2602..2669 | 371..304 | 115 | 63.2 | Minus |
BO12139.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:11 Download gff for
BO12139.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15626-PA | 579..1494 | 16..932 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:26 Download gff for
BO12139.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15626-PA | 579..1494 | 16..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:29:35 Download gff for
BO12139.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15626-RB | 893..1813 | 10..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:02 Download gff for
BO12139.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tank-RB | 893..1813 | 10..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:02 Download gff for
BO12139.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4835735..4836244 | 10..520 | 99 | <- | Plus |
2L | 4836483..4836893 | 521..932 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:29:35 Download gff for
BO12139.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4835735..4836244 | 10..520 | 99 | <- | Plus |
arm_2L | 4836483..4836893 | 521..932 | 99 | | Plus |
BO12139.5prime Sequence
967 bp (804 high quality bases) assembled on 2006-04-20
> BO12139.5prime
GAAGTTATCAGTCGACATGGCGGCGATAAAGAACATCACCCTGGGCATTC
TGTACGGCCTGTGGGACAGCATACGTGGCATGACACTGGTCCTGCACATC
GACGACGAGGTGAACCGCCAGAATGCCGAGCAGGAGCACCGCCAACAGCT
GCGTCGCACCGACAAGGATCGTTACGAACGCGCCAGGAGATCACCGTCAC
CAGTGCCCAGTTCCGCGGCTGCCATGATTCGGGAGGAGTATGCCAAGCAG
GCGGAGGAGAACGCCGACGAGCGGACGCTAGAGAAGATCCTGGGCAAGAA
GCCAGCCGCCCAGGATCAACACCCGCAGGGGGAGAAGAAGATCGCCAAGA
AGCTGTTCAAGTGCTGCATGCTCAATGGCGGTTTCACCTGGCTGAGCATC
GTCCTGTTCGAGAACGCTCTGCTGCCCACGCTCAAATTCTGCCTTACCAT
CTTCTATGGAGCCCATTCCGAGACCCTGCCGGTGGTTTGGGGCTGGCTGC
ATCCCATACTGTCCCTGCTCTTCGGCATGATGTGGGTGCTGCCCATATTC
ATGCTCTCCAAGATTGTGAGCTCTCTGTGGTTCGCGGACATAGCCAATGC
CGCGTATCGCGTGAGAAAGGGTCGCCCGCAGCTAATCCCTGGAATTAGCA
AACTGGTGGCCGACTTCCTATTCAGCATGGTGGTGCAAATGCTGTTCCTG
GTACAGAGCATGCTGGTTAACCTAGTGCCTGTGAAATATGTGGGCTCCTC
GCTGTGCTTCGTGCATCTGTGCCTGCTCTACTCACTGTACTCCTTCGAGT
ACAAGTGGTTCAACATGGGCTGGGAGCTACATAGACGACTCACGTACATT
GAAAAGAACTGGCCCTATTTCTTCGGCTTCGGAATACCGCTCACCGTGCT
GACAAATCTGTCCAGCTCGGTGATCGTCAGTAGCTGCATCTTCTCCATCT
TTTTTCCCTGTTCATAC
BO12139.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15626-PB | 1494 | CG15626-RB | 1..942 | 17..958 | 4710 | 100 | Plus |
CG15626-PA | 1494 | CG15626-RA | 1..942 | 17..958 | 4710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:06:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tank-RA | 2077 | CG15626-RA | 175..1130 | 13..967 | 4740 | 99.8 | Plus |
tank-RB | 2213 | CG15626-RB | 311..1266 | 13..967 | 4740 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:06:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4836530..4837158 | 958..330 | 3145 | 100 | Minus |
2L | 23513712 | 2L | 4837234..4837535 | 331..30 | 1510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:06:37 has no hits.
BO12139.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:12 Download gff for
BO12139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15626-PA | 1..952 | 17..967 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:28 Download gff for
BO12139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15626-PA | 1..952 | 17..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:10:13 Download gff for
BO12139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15626-RB | 307..1266 | 9..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:40 Download gff for
BO12139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tank-RB | 307..1266 | 9..967 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:40 Download gff for
BO12139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4836520..4837157 | 331..967 | 99 | <- | Minus |
2L | 4837235..4837533 | 32..330 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:10:13 Download gff for
BO12139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4836520..4837157 | 331..967 | 99 | <- | Minus |
arm_2L | 4837235..4837533 | 32..330 | 100 | <- | Minus |
BO12139.complete Sequence
1525 bp assembled on 2006-10-11
GenBank Submission: FJ632327
> BO12139.complete
GAAGTTATCAGTCGACATGGCGGCGATAAAGAACATCACCCTGGGCATTC
TGTACGGCCTGTGGGACAGCATACGTGGCATGACACTGGTCCTGCACATC
GACGACGAGGTGAACCGCCAGAATGCCGAGCAGGAGCACCGCCAACAGCT
GCGTCGCACCGACAAGGATCGTTACGAACGCGCCAGGAGATCACCGTCAC
CAGTGCCCAGTTCCGCGGCTGCCATGATTCGGGAGGAGTATGCCAAGCAG
GCGGAGGAGAACGCCGACGAGCGGACGCTAGAGAAGATCCTGGGCAAGAA
GCCAGCCGCCCAGGATCAACACCCGCAGGGGGAGAAGAAGATCGCCAAGA
AGCTGTTCAAGTGCTGCATGCTCAATGGCGGTTTCACCTGGCTGAGCATC
GTCCTGTTCGAGAACGCTCTGCTGCCCACGCTCAAATTCTGCCTTACCAT
CTTCTATGGAGCCCATTCCGAGACCCTGCCGGTGGTTTGGGGCTGGCTGC
ATCCCATACTGTCCCTGCTCTTCGGCATGATGTGGGTGCTGCCCATATTC
ATGCTCTCCAAGATTGTGAGCTCTCTGTGGTTCGCGGACATAGCCAATGC
CGCGTATCGCGTGAGAAAGGGTCGCCCGCAGCTAATCCCTGGAATTAGCA
AACTGGTGGCCGACTTCCTATTCAGCATGGTGGTGCAAATGCTGTTCCTG
GTACAGAGCATGCTGGTTAACCTAGTGCCTGTGAAATATGTGGGCTCCTC
GCTGTGCTTCGTGCATCTGTGCCTGCTCTACTCACTGTACTCCTTCGAGT
ACAAGTGGTTCAACATGGGCTGGGAGCTACATAGACGACTCACGTACATT
GAAAAGAACTGGCCCTATTTCTTCGGCTTCGGAATACCGCTCACCGTGCT
GACAAATCTGTCCAGCTCGGTGATCGTCAGTAGCTGCATCTTCTCCATCT
TTTTTCCCCTGTTCATACTCAGCGGCAATGAGGCAAAACCCATTGTGGAC
ACCACTGAGGTCTCCCTGCGTCTCTTCTCGCCGGTGGTCTTCATATCGAA
CCTCTGCTTCGGCGGCAATCCGTGGAGCAAGGCCAATCGACTGAGTGCCA
TGCAGCGGCAGCAGTATGAGCTGCAGCAGCGACAGCGTTTGCTCCAGCGG
GACGAGCAACTGCTCAAGCAGCGCAAGCAGCAATATGTGCAGCAGCAACG
GCTGCAACAGGAGCAGCTAATGCGACGTGATCGCTCGCATTCGCGATCAC
AGACACCGCAGCTGGGACATCCGCATCGCTACGCCCAGGCGCCCGTTTTC
GATGCGGGTCGGGTGCGCGATTCCTCCGCCTCGTCAACGCACAGCTCCAA
TGCGCCGAGCATTAATAGCCATCGGCCGCCGCCTTATTACGGCAGCTCGC
TGCGCGGAGCTGCGCCTTTGGTGCCCACTCCTGTGCCCGGTGCACCGAGA
GCTCCGCTAACCCCGCCCGTGATACGCCAGGAGTCGGGGCCCGATGACTG
GAACTTGGCAAGCTTTCTAGACCAT
BO12139.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:51:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tank-RA | 1494 | CG15626-PA | 1..1491 | 17..1507 | 7455 | 100 | Plus |
tank-RB | 1494 | CG15626-PB | 1..1491 | 17..1507 | 7455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tank-RA | 2077 | CG15626-RA | 175..1669 | 13..1507 | 7460 | 99.9 | Plus |
tank-RB | 2213 | CG15626-RB | 311..1805 | 13..1507 | 7460 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4836483..4837158 | 1005..330 | 3380 | 100 | Minus |
2L | 23513712 | 2L | 4835743..4836248 | 1507..1002 | 2515 | 99.8 | Minus |
2L | 23513712 | 2L | 4837234..4837535 | 331..30 | 1510 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:50:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2499 | 1103..1277 | 245 | 60 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6860 | 1103..1217 | 224 | 66.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6841 | 1102..1219 | 221 | 65.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6653..6966 | 975..1302 | 213 | 56.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6833 | 1109..1223 | 208 | 66.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1029..1163 | 1072..1214 | 173 | 62.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..6839 | 1133..1292 | 169 | 57.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6794 | 1152..1226 | 168 | 69.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2523 | 1102..1257 | 166 | 59.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6812 | 1145..1223 | 163 | 69.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6814..6929 | 1102..1211 | 152 | 62.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2394 | 1141..1226 | 149 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2417..2532 | 1102..1217 | 139 | 57.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1515..1590 | 1151..1220 | 133 | 67.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2602..2669 | 1155..1222 | 115 | 63.2 | Plus |
BO12139.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:35 Download gff for
BO12139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15626-RA | 1..1494 | 17..1510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:23 Download gff for
BO12139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15626-RA | 168..1674 | 9..1516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:46:03 Download gff for
BO12139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15626-RB | 315..1805 | 17..1509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:35 Download gff for
BO12139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15626-RA | 168..1674 | 9..1516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:01 Download gff for
BO12139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tank-RB | 315..1805 | 17..1509 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:01 Download gff for
BO12139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4835740..4836244 | 1006..1509 | 99 | <- | Minus |
2L | 4836483..4837157 | 331..1005 | 100 | <- | Minus |
2L | 4837235..4837533 | 32..330 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:46:03 Download gff for
BO12139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4835740..4836244 | 1006..1509 | 99 | <- | Minus |
arm_2L | 4836483..4837157 | 331..1005 | 100 | <- | Minus |
arm_2L | 4837235..4837533 | 32..330 | 100 | <- | Minus |
BO12139.pep Sequence
Translation from 16 to 1525
> BO12139.pep
MAAIKNITLGILYGLWDSIRGMTLVLHIDDEVNRQNAEQEHRQQLRRTDK
DRYERARRSPSPVPSSAAAMIREEYAKQAEENADERTLEKILGKKPAAQD
QHPQGEKKIAKKLFKCCMLNGGFTWLSIVLFENALLPTLKFCLTIFYGAH
SETLPVVWGWLHPILSLLFGMMWVLPIFMLSKIVSSLWFADIANAAYRVR
KGRPQLIPGISKLVADFLFSMVVQMLFLVQSMLVNLVPVKYVGSSLCFVH
LCLLYSLYSFEYKWFNMGWELHRRLTYIEKNWPYFFGFGIPLTVLTNLSS
SVIVSSCIFSIFFPLFILSGNEAKPIVDTTEVSLRLFSPVVFISNLCFGG
NPWSKANRLSAMQRQQYELQQRQRLLQRDEQLLKQRKQQYVQQQRLQQEQ
LMRRDRSHSRSQTPQLGHPHRYAQAPVFDAGRVRDSSASSTHSSNAPSIN
SHRPPPYYGSSLRGAAPLVPTPVPGAPRAPLTPPVIRQESGPDDWNLASF
LDH
BO12139.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tank-PA | 497 | CG15626-PA | 1..497 | 1..497 | 2607 | 100 | Plus |
tank-PB | 497 | CG15626-PB | 1..497 | 1..497 | 2607 | 100 | Plus |