Clone BO12139 Report

Search the DGRC for BO12139

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG15626-RA
Protein status:BO12139.pep: validated full length
Sequenced Size:1525

Clone Sequence Records

BO12139.3prime Sequence

932 bp (801 high quality bases) assembled on 2006-04-20

> BO12139.3prime
ATGGTCTAGAAAGCTTGCCAAGTTCCAGTCATCGGGCCCCGACTCCTGGC
GTATCACGGGCGGGGTTAGCGGAGCTCTCGGTGCACCGGGCACAGGAGTG
GGCACCAAAGGCGCAGCTCCGCGCAGCGAGCTGCCGTAATAAGGCGGCGG
CCGATGGCTATTAATGCTCGGCGCATTGGAGCTGTGCGTTGACGAGGCGG
AGGAATCGCGCACCCGACCCGCATCGAAAACGGGCGCCTGGGCGTAGCGA
TGCGGATGTCCCAGCTGCGGTGTCTGTGATCGCGAATGCGAGCGATCACG
TCGCATTAGCTGCTCCTGTTGCAGCCGTTGCTGCTGCACATATTGCTGCT
TGCGCTGCTTGAGCAGTTGCTCGTCCCGCTGGAGCAAACGCTGTCGCTGC
TGCAGCTCATACTGCTGCCGCTGCATGGCACTCAGTCGATTGGCCTTGCT
CCACGGATTGCCGCCGAAGCAGAGGTTCGATATGAAGACCACCGGCGAGA
AGAGACGCAGGGAGACCTCAGTGGTGTCCACAATGGGTTTTGCCTCATTG
CCGCTGAGTATGAACAGGGGAAAAAAGATGGAGAAGATGCAGCTACTGAC
GATCACCGAGCTGGACAGATTTGTCAGCACGGTGAGCGGTATTCCGAAGC
CGAAGAAATAGGGCCAGTTCTTTTCAATGTACGTGAGTCGTCTATGTAGC
TCCCAGCCCATGTTGAACCACTTGTACTCGAAGGAGTACAGTGAGTAGAG
CAGGCACAGATGCACGAAGCACAGCGAGGAGCCCACATATTTCACAGGCA
CTAGGTTAACCAGCATGCTCTGTACCAGGAACAGCATTTGCACCCACATG
CTGAATAGGAAGTCGGCCACCAGTTTGCTAATTCCAGGGATTAGCTGCGG
GGCGACCCCTTCTCACGCGATACGCGGCATTG

BO12139.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG15626-PB 1494 CG15626-RB 609..1491 901..19 4365 99.7 Minus
CG15626-PA 1494 CG15626-RA 609..1491 901..19 4365 99.7 Minus
CG15626-PB 1494 CG15626-RB 579..611 932..900 140 96.9 Minus
CG15626-PA 1494 CG15626-RA 579..611 932..900 140 96.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
tank-RA 2077 CG15626-RA 757..1669 932..19 4500 99.6 Minus
tank-RB 2213 CG15626-RB 893..1805 932..19 4500 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4835743..4836248 19..524 2515 99.8 Plus
2L 23513712 2L 4836483..4836893 521..932 1965 99 Plus
Blast to na_te.dros performed 2015-02-10 16:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2499 423..249 245 60 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6860 423..309 224 66.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6841 424..307 221 65.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6653..6966 551..224 213 56.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6833 417..303 208 66.1 Minus
roo 9092 roo DM_ROO 9092bp 1029..1163 454..312 173 62.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6680..6839 393..234 169 57.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6794 374..300 168 69.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2523 424..269 166 59.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6812 381..303 163 69.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6814..6929 424..315 152 62.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2394 385..300 149 66.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2417..2532 424..309 139 57.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1515..1590 375..306 133 67.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2760..2883 426..300 133 57.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2602..2669 371..304 115 63.2 Minus

BO12139.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:11 Download gff for BO12139.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15626-PA 579..1494 16..932 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:26 Download gff for BO12139.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15626-PA 579..1494 16..932 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:29:35 Download gff for BO12139.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15626-RB 893..1813 10..932 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:02 Download gff for BO12139.3prime
Subject Subject Range Query Range Percent Splice Strand
tank-RB 893..1813 10..932 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:02 Download gff for BO12139.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4835735..4836244 10..520 99 <- Plus
2L 4836483..4836893 521..932 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:29:35 Download gff for BO12139.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4835735..4836244 10..520 99 <- Plus
arm_2L 4836483..4836893 521..932 99   Plus

BO12139.5prime Sequence

967 bp (804 high quality bases) assembled on 2006-04-20

> BO12139.5prime
GAAGTTATCAGTCGACATGGCGGCGATAAAGAACATCACCCTGGGCATTC
TGTACGGCCTGTGGGACAGCATACGTGGCATGACACTGGTCCTGCACATC
GACGACGAGGTGAACCGCCAGAATGCCGAGCAGGAGCACCGCCAACAGCT
GCGTCGCACCGACAAGGATCGTTACGAACGCGCCAGGAGATCACCGTCAC
CAGTGCCCAGTTCCGCGGCTGCCATGATTCGGGAGGAGTATGCCAAGCAG
GCGGAGGAGAACGCCGACGAGCGGACGCTAGAGAAGATCCTGGGCAAGAA
GCCAGCCGCCCAGGATCAACACCCGCAGGGGGAGAAGAAGATCGCCAAGA
AGCTGTTCAAGTGCTGCATGCTCAATGGCGGTTTCACCTGGCTGAGCATC
GTCCTGTTCGAGAACGCTCTGCTGCCCACGCTCAAATTCTGCCTTACCAT
CTTCTATGGAGCCCATTCCGAGACCCTGCCGGTGGTTTGGGGCTGGCTGC
ATCCCATACTGTCCCTGCTCTTCGGCATGATGTGGGTGCTGCCCATATTC
ATGCTCTCCAAGATTGTGAGCTCTCTGTGGTTCGCGGACATAGCCAATGC
CGCGTATCGCGTGAGAAAGGGTCGCCCGCAGCTAATCCCTGGAATTAGCA
AACTGGTGGCCGACTTCCTATTCAGCATGGTGGTGCAAATGCTGTTCCTG
GTACAGAGCATGCTGGTTAACCTAGTGCCTGTGAAATATGTGGGCTCCTC
GCTGTGCTTCGTGCATCTGTGCCTGCTCTACTCACTGTACTCCTTCGAGT
ACAAGTGGTTCAACATGGGCTGGGAGCTACATAGACGACTCACGTACATT
GAAAAGAACTGGCCCTATTTCTTCGGCTTCGGAATACCGCTCACCGTGCT
GACAAATCTGTCCAGCTCGGTGATCGTCAGTAGCTGCATCTTCTCCATCT
TTTTTCCCTGTTCATAC

BO12139.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG15626-PB 1494 CG15626-RB 1..942 17..958 4710 100 Plus
CG15626-PA 1494 CG15626-RA 1..942 17..958 4710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
tank-RA 2077 CG15626-RA 175..1130 13..967 4740 99.8 Plus
tank-RB 2213 CG15626-RB 311..1266 13..967 4740 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4836530..4837158 958..330 3145 100 Minus
2L 23513712 2L 4837234..4837535 331..30 1510 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:06:37 has no hits.

BO12139.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:12 Download gff for BO12139.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15626-PA 1..952 17..967 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:28 Download gff for BO12139.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15626-PA 1..952 17..967 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:10:13 Download gff for BO12139.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15626-RB 307..1266 9..967 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:40 Download gff for BO12139.5prime
Subject Subject Range Query Range Percent Splice Strand
tank-RB 307..1266 9..967 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:40 Download gff for BO12139.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4836520..4837157 331..967 99 <- Minus
2L 4837235..4837533 32..330 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:10:13 Download gff for BO12139.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4836520..4837157 331..967 99 <- Minus
arm_2L 4837235..4837533 32..330 100 <- Minus

BO12139.complete Sequence

1525 bp assembled on 2006-10-11

GenBank Submission: FJ632327

> BO12139.complete
GAAGTTATCAGTCGACATGGCGGCGATAAAGAACATCACCCTGGGCATTC
TGTACGGCCTGTGGGACAGCATACGTGGCATGACACTGGTCCTGCACATC
GACGACGAGGTGAACCGCCAGAATGCCGAGCAGGAGCACCGCCAACAGCT
GCGTCGCACCGACAAGGATCGTTACGAACGCGCCAGGAGATCACCGTCAC
CAGTGCCCAGTTCCGCGGCTGCCATGATTCGGGAGGAGTATGCCAAGCAG
GCGGAGGAGAACGCCGACGAGCGGACGCTAGAGAAGATCCTGGGCAAGAA
GCCAGCCGCCCAGGATCAACACCCGCAGGGGGAGAAGAAGATCGCCAAGA
AGCTGTTCAAGTGCTGCATGCTCAATGGCGGTTTCACCTGGCTGAGCATC
GTCCTGTTCGAGAACGCTCTGCTGCCCACGCTCAAATTCTGCCTTACCAT
CTTCTATGGAGCCCATTCCGAGACCCTGCCGGTGGTTTGGGGCTGGCTGC
ATCCCATACTGTCCCTGCTCTTCGGCATGATGTGGGTGCTGCCCATATTC
ATGCTCTCCAAGATTGTGAGCTCTCTGTGGTTCGCGGACATAGCCAATGC
CGCGTATCGCGTGAGAAAGGGTCGCCCGCAGCTAATCCCTGGAATTAGCA
AACTGGTGGCCGACTTCCTATTCAGCATGGTGGTGCAAATGCTGTTCCTG
GTACAGAGCATGCTGGTTAACCTAGTGCCTGTGAAATATGTGGGCTCCTC
GCTGTGCTTCGTGCATCTGTGCCTGCTCTACTCACTGTACTCCTTCGAGT
ACAAGTGGTTCAACATGGGCTGGGAGCTACATAGACGACTCACGTACATT
GAAAAGAACTGGCCCTATTTCTTCGGCTTCGGAATACCGCTCACCGTGCT
GACAAATCTGTCCAGCTCGGTGATCGTCAGTAGCTGCATCTTCTCCATCT
TTTTTCCCCTGTTCATACTCAGCGGCAATGAGGCAAAACCCATTGTGGAC
ACCACTGAGGTCTCCCTGCGTCTCTTCTCGCCGGTGGTCTTCATATCGAA
CCTCTGCTTCGGCGGCAATCCGTGGAGCAAGGCCAATCGACTGAGTGCCA
TGCAGCGGCAGCAGTATGAGCTGCAGCAGCGACAGCGTTTGCTCCAGCGG
GACGAGCAACTGCTCAAGCAGCGCAAGCAGCAATATGTGCAGCAGCAACG
GCTGCAACAGGAGCAGCTAATGCGACGTGATCGCTCGCATTCGCGATCAC
AGACACCGCAGCTGGGACATCCGCATCGCTACGCCCAGGCGCCCGTTTTC
GATGCGGGTCGGGTGCGCGATTCCTCCGCCTCGTCAACGCACAGCTCCAA
TGCGCCGAGCATTAATAGCCATCGGCCGCCGCCTTATTACGGCAGCTCGC
TGCGCGGAGCTGCGCCTTTGGTGCCCACTCCTGTGCCCGGTGCACCGAGA
GCTCCGCTAACCCCGCCCGTGATACGCCAGGAGTCGGGGCCCGATGACTG
GAACTTGGCAAGCTTTCTAGACCAT

BO12139.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
tank-RA 1494 CG15626-PA 1..1491 17..1507 7455 100 Plus
tank-RB 1494 CG15626-PB 1..1491 17..1507 7455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
tank-RA 2077 CG15626-RA 175..1669 13..1507 7460 99.9 Plus
tank-RB 2213 CG15626-RB 311..1805 13..1507 7460 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4836483..4837158 1005..330 3380 100 Minus
2L 23513712 2L 4835743..4836248 1507..1002 2515 99.8 Minus
2L 23513712 2L 4837234..4837535 331..30 1510 100 Minus
Blast to na_te.dros performed 2014-11-26 15:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2499 1103..1277 245 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6860 1103..1217 224 66.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6841 1102..1219 221 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6653..6966 975..1302 213 56.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6833 1109..1223 208 66.1 Plus
roo 9092 roo DM_ROO 9092bp 1029..1163 1072..1214 173 62.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6680..6839 1133..1292 169 57.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6794 1152..1226 168 69.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2523 1102..1257 166 59.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6812 1145..1223 163 69.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6814..6929 1102..1211 152 62.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2394 1141..1226 149 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2417..2532 1102..1217 139 57.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1515..1590 1151..1220 133 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2602..2669 1155..1222 115 63.2 Plus

BO12139.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:35 Download gff for BO12139.complete
Subject Subject Range Query Range Percent Splice Strand
CG15626-RA 1..1494 17..1510 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:23 Download gff for BO12139.complete
Subject Subject Range Query Range Percent Splice Strand
CG15626-RA 168..1674 9..1516 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:46:03 Download gff for BO12139.complete
Subject Subject Range Query Range Percent Splice Strand
CG15626-RB 315..1805 17..1509 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:35 Download gff for BO12139.complete
Subject Subject Range Query Range Percent Splice Strand
CG15626-RA 168..1674 9..1516 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:01 Download gff for BO12139.complete
Subject Subject Range Query Range Percent Splice Strand
tank-RB 315..1805 17..1509 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:01 Download gff for BO12139.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4835740..4836244 1006..1509 99 <- Minus
2L 4836483..4837157 331..1005 100 <- Minus
2L 4837235..4837533 32..330 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:46:03 Download gff for BO12139.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4835740..4836244 1006..1509 99 <- Minus
arm_2L 4836483..4837157 331..1005 100 <- Minus
arm_2L 4837235..4837533 32..330 100 <- Minus

BO12139.pep Sequence

Translation from 16 to 1525

> BO12139.pep
MAAIKNITLGILYGLWDSIRGMTLVLHIDDEVNRQNAEQEHRQQLRRTDK
DRYERARRSPSPVPSSAAAMIREEYAKQAEENADERTLEKILGKKPAAQD
QHPQGEKKIAKKLFKCCMLNGGFTWLSIVLFENALLPTLKFCLTIFYGAH
SETLPVVWGWLHPILSLLFGMMWVLPIFMLSKIVSSLWFADIANAAYRVR
KGRPQLIPGISKLVADFLFSMVVQMLFLVQSMLVNLVPVKYVGSSLCFVH
LCLLYSLYSFEYKWFNMGWELHRRLTYIEKNWPYFFGFGIPLTVLTNLSS
SVIVSSCIFSIFFPLFILSGNEAKPIVDTTEVSLRLFSPVVFISNLCFGG
NPWSKANRLSAMQRQQYELQQRQRLLQRDEQLLKQRKQQYVQQQRLQQEQ
LMRRDRSHSRSQTPQLGHPHRYAQAPVFDAGRVRDSSASSTHSSNAPSIN
SHRPPPYYGSSLRGAAPLVPTPVPGAPRAPLTPPVIRQESGPDDWNLASF
LDH

BO12139.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
tank-PA 497 CG15626-PA 1..497 1..497 2607 100 Plus
tank-PB 497 CG15626-PB 1..497 1..497 2607 100 Plus