Clone Sequence Records
BO12142.5prime Sequence
431 bp (430 high quality bases) assembled on 2006-04-20
> BO12142.5prime
GAAGTTATCAGTCGACATGTCGGATAGTGATTTGGATGCCTTACGCGCGC
AGCGCATGTCCCAAATGCAGTCGCAATTCGGCGGCGGCAATGATGCGGAA
AAGCAACAAGCCCAGCAGGAGCAGATGCGCGCCCAGGAGGAAATGAAGCA
CTCGATATTATCCCAAGTTCTGGACCAGCAGGCCAGGGCACGACTTAATA
CCCTCAAAGTCAGCAAGCCGGAGAAGGCGCAAATGTTCGAGAACATGGTC
ATCCGCATGGCCCAGATGGGTCAGGTGCGTGGAAAACTTGATGACGCCCA
GTTCGTCAGCATCCTCGAAAGCGTCAATGCTCAGATGCCGCAGAGCAAGT
CCTCCGTGAAATACGATCGGCGGCGGGCGGCCATCGATAGCGACGACGAC
GAGGATTACGGCTGCGCAAGCTTTCTAGACC
BO12142.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13072-PA | 402 | PDCD-5-RA | 1..399 | 17..415 | 1995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:14:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PDCD-5-RA | 650 | CG13072-RA | 137..535 | 17..415 | 1995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:14:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16231196..16231416 | 415..195 | 1105 | 100 | Minus |
3L | 28110227 | 3L | 16231474..16231588 | 194..80 | 575 | 100 | Minus |
3L | 28110227 | 3L | 16231839..16231902 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:14:33 has no hits.
BO12142.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:18 Download gff for
BO12142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13072-PA | 1..402 | 17..418 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:36 Download gff for
BO12142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13072-PA | 1..402 | 17..418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:54:02 Download gff for
BO12142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PDCD-5-RA | 133..535 | 9..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:23:54 Download gff for
BO12142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PDCD-5-RA | 133..535 | 9..415 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:23:54 Download gff for
BO12142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16231196..16231416 | 195..415 | 100 | <- | Minus |
3L | 16231474..16231588 | 80..194 | 100 | <- | Minus |
3L | 16231840..16231906 | 9..79 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:54:02 Download gff for
BO12142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16224296..16224516 | 195..415 | 100 | <- | Minus |
arm_3L | 16224574..16224688 | 80..194 | 100 | <- | Minus |
arm_3L | 16224940..16225006 | 9..79 | 94 | | Minus |
BO12142.3prime Sequence
431 bp (430 high quality bases) assembled on 2006-04-20
> BO12142.3prime
ATGGTCTAGAAAGCTTGCGCAGCCGTAATCCTCGTCGTCGTCGCTATCGA
TGGCCGCCCGCCGCCGATCGTATTTCACGGAGGACTTGCTCTGCGGCATC
TGAGCATTGACGCTTTCGAGGATGCTGACGAACTGGGCGTCATCAAGTTT
TCCACGCACCTGACCCATCTGGGCCATGCGGATGACCATGTTCTCGAACA
TTTGCGCCTTCTCCGGCTTGCTGACTTTGAGGGTATTAAGTCGTGCCCTG
GCCTGCTGGTCCAGAACTTGGGATAATATCGAGTGCTTCATTTCCTCCTG
GGCGCGCATCTGCTCCTGCTGGGCTTGTTGCTTTTCCGCATCATTGCCGC
CGCCGAATTGCGACTGCATTTGGGACATGCGCTGCGCGCGTAAGGCATCC
AAATCACTATCCGACATGTCGACTGATAACT
BO12142.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13072-PA | 402 | PDCD-5-RA | 1..399 | 417..19 | 1995 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:05:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PDCD-5-RA | 650 | CG13072-RA | 137..535 | 417..19 | 1995 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:04:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16231196..16231416 | 19..239 | 1105 | 100 | Plus |
3L | 28110227 | 3L | 16231474..16231588 | 240..354 | 575 | 100 | Plus |
3L | 28110227 | 3L | 16231839..16231902 | 354..417 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:05:00 has no hits.
BO12142.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:17 Download gff for
BO12142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13072-PA | 1..402 | 16..417 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:35 Download gff for
BO12142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13072-PA | 1..402 | 16..417 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:27:51 Download gff for
BO12142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PDCD-5-RA | 133..535 | 19..425 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:46:48 Download gff for
BO12142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PDCD-5-RA | 133..535 | 19..425 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:46:48 Download gff for
BO12142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16231196..16231416 | 19..239 | 100 | <- | Plus |
3L | 16231474..16231588 | 240..354 | 100 | <- | Plus |
3L | 16231840..16231906 | 355..425 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:27:51 Download gff for
BO12142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16224296..16224516 | 19..239 | 100 | <- | Plus |
arm_3L | 16224574..16224688 | 240..354 | 100 | <- | Plus |
arm_3L | 16224940..16225006 | 355..425 | 94 | | Plus |
BO12142.complete Sequence
433 bp assembled on 2006-10-11
GenBank Submission: FJ632328
> BO12142.complete
GAAGTTATCAGTCGACATGTCGGATAGTGATTTGGATGCCTTACGCGCGC
AGCGCATGTCCCAAATGCAGTCGCAATTCGGCGGCGGCAATGATGCGGAA
AAGCAACAAGCCCAGCAGGAGCAGATGCGCGCCCAGGAGGAAATGAAGCA
CTCGATATTATCCCAAGTTCTGGACCAGCAGGCCAGGGCACGACTTAATA
CCCTCAAAGTCAGCAAGCCGGAGAAGGCGCAAATGTTCGAGAACATGGTC
ATCCGCATGGCCCAGATGGGTCAGGTGCGTGGAAAACTTGATGACGCCCA
GTTCGTCAGCATCCTCGAAAGCGTCAATGCTCAGATGCCGCAGAGCAAGT
CCTCCGTGAAATACGATCGGCGGCGGGCGGCCATCGATAGCGACGACGAC
GAGGATTACGGCTGCGCAAGCTTTCTAGACCAT
BO12142.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PDCD-5-RA | 402 | CG13072-PA | 1..399 | 17..415 | 1995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PDCD-5-RA | 650 | CG13072-RA | 137..535 | 17..415 | 1995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16231196..16231416 | 415..195 | 1105 | 100 | Minus |
3L | 28110227 | 3L | 16231474..16231588 | 194..80 | 575 | 100 | Minus |
3L | 28110227 | 3L | 16231839..16231902 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:39:48 has no hits.
BO12142.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:00 Download gff for
BO12142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PDCD-5-RA | 1..402 | 17..418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:20 Download gff for
BO12142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PDCD-5-RA | 127..529 | 9..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:28 Download gff for
BO12142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PDCD-5-RA | 137..535 | 17..417 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:00 Download gff for
BO12142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PDCD-5-RA | 127..529 | 9..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:04 Download gff for
BO12142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PDCD-5-RA | 137..535 | 17..417 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:04 Download gff for
BO12142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16231193..16231416 | 195..417 | 99 | <- | Minus |
3L | 16231474..16231588 | 80..194 | 100 | <- | Minus |
3L | 16231840..16231902 | 17..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:28 Download gff for
BO12142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16224293..16224516 | 195..417 | 99 | <- | Minus |
arm_3L | 16224574..16224688 | 80..194 | 100 | <- | Minus |
arm_3L | 16224940..16225002 | 17..79 | 100 | | Minus |
BO12142.pep Sequence
Translation from 16 to 433
> BO12142.pep
MSDSDLDALRAQRMSQMQSQFGGGNDAEKQQAQQEQMRAQEEMKHSILSQ
VLDQQARARLNTLKVSKPEKAQMFENMVIRMAQMGQVRGKLDDAQFVSIL
ESVNAQMPQSKSSVKYDRRRAAIDSDDDEDYGCASFLDH
BO12142.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:18:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PDCD-5-PA | 133 | CG13072-PA | 1..133 | 1..133 | 661 | 100 | Plus |