Clone BO12142 Report

Search the DGRC for BO12142

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptPDCD-5-RA
Protein status:BO12142.pep: validated full length
Sequenced Size:433

Clone Sequence Records

BO12142.5prime Sequence

431 bp (430 high quality bases) assembled on 2006-04-20

> BO12142.5prime
GAAGTTATCAGTCGACATGTCGGATAGTGATTTGGATGCCTTACGCGCGC
AGCGCATGTCCCAAATGCAGTCGCAATTCGGCGGCGGCAATGATGCGGAA
AAGCAACAAGCCCAGCAGGAGCAGATGCGCGCCCAGGAGGAAATGAAGCA
CTCGATATTATCCCAAGTTCTGGACCAGCAGGCCAGGGCACGACTTAATA
CCCTCAAAGTCAGCAAGCCGGAGAAGGCGCAAATGTTCGAGAACATGGTC
ATCCGCATGGCCCAGATGGGTCAGGTGCGTGGAAAACTTGATGACGCCCA
GTTCGTCAGCATCCTCGAAAGCGTCAATGCTCAGATGCCGCAGAGCAAGT
CCTCCGTGAAATACGATCGGCGGCGGGCGGCCATCGATAGCGACGACGAC
GAGGATTACGGCTGCGCAAGCTTTCTAGACC

BO12142.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG13072-PA 402 PDCD-5-RA 1..399 17..415 1995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
PDCD-5-RA 650 CG13072-RA 137..535 17..415 1995 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16231196..16231416 415..195 1105 100 Minus
3L 28110227 3L 16231474..16231588 194..80 575 100 Minus
3L 28110227 3L 16231839..16231902 80..17 320 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:14:33 has no hits.

BO12142.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:18 Download gff for BO12142.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13072-PA 1..402 17..418 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:36 Download gff for BO12142.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13072-PA 1..402 17..418 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:54:02 Download gff for BO12142.5prime
Subject Subject Range Query Range Percent Splice Strand
PDCD-5-RA 133..535 9..415 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:23:54 Download gff for BO12142.5prime
Subject Subject Range Query Range Percent Splice Strand
PDCD-5-RA 133..535 9..415 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:23:54 Download gff for BO12142.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16231196..16231416 195..415 100 <- Minus
3L 16231474..16231588 80..194 100 <- Minus
3L 16231840..16231906 9..79 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:54:02 Download gff for BO12142.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16224296..16224516 195..415 100 <- Minus
arm_3L 16224574..16224688 80..194 100 <- Minus
arm_3L 16224940..16225006 9..79 94   Minus

BO12142.3prime Sequence

431 bp (430 high quality bases) assembled on 2006-04-20

> BO12142.3prime
ATGGTCTAGAAAGCTTGCGCAGCCGTAATCCTCGTCGTCGTCGCTATCGA
TGGCCGCCCGCCGCCGATCGTATTTCACGGAGGACTTGCTCTGCGGCATC
TGAGCATTGACGCTTTCGAGGATGCTGACGAACTGGGCGTCATCAAGTTT
TCCACGCACCTGACCCATCTGGGCCATGCGGATGACCATGTTCTCGAACA
TTTGCGCCTTCTCCGGCTTGCTGACTTTGAGGGTATTAAGTCGTGCCCTG
GCCTGCTGGTCCAGAACTTGGGATAATATCGAGTGCTTCATTTCCTCCTG
GGCGCGCATCTGCTCCTGCTGGGCTTGTTGCTTTTCCGCATCATTGCCGC
CGCCGAATTGCGACTGCATTTGGGACATGCGCTGCGCGCGTAAGGCATCC
AAATCACTATCCGACATGTCGACTGATAACT

BO12142.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG13072-PA 402 PDCD-5-RA 1..399 417..19 1995 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
PDCD-5-RA 650 CG13072-RA 137..535 417..19 1995 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16231196..16231416 19..239 1105 100 Plus
3L 28110227 3L 16231474..16231588 240..354 575 100 Plus
3L 28110227 3L 16231839..16231902 354..417 320 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:05:00 has no hits.

BO12142.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:17 Download gff for BO12142.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13072-PA 1..402 16..417 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:35 Download gff for BO12142.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13072-PA 1..402 16..417 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:27:51 Download gff for BO12142.3prime
Subject Subject Range Query Range Percent Splice Strand
PDCD-5-RA 133..535 19..425 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:46:48 Download gff for BO12142.3prime
Subject Subject Range Query Range Percent Splice Strand
PDCD-5-RA 133..535 19..425 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:46:48 Download gff for BO12142.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16231196..16231416 19..239 100 <- Plus
3L 16231474..16231588 240..354 100 <- Plus
3L 16231840..16231906 355..425 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:27:51 Download gff for BO12142.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16224296..16224516 19..239 100 <- Plus
arm_3L 16224574..16224688 240..354 100 <- Plus
arm_3L 16224940..16225006 355..425 94   Plus

BO12142.complete Sequence

433 bp assembled on 2006-10-11

GenBank Submission: FJ632328

> BO12142.complete
GAAGTTATCAGTCGACATGTCGGATAGTGATTTGGATGCCTTACGCGCGC
AGCGCATGTCCCAAATGCAGTCGCAATTCGGCGGCGGCAATGATGCGGAA
AAGCAACAAGCCCAGCAGGAGCAGATGCGCGCCCAGGAGGAAATGAAGCA
CTCGATATTATCCCAAGTTCTGGACCAGCAGGCCAGGGCACGACTTAATA
CCCTCAAAGTCAGCAAGCCGGAGAAGGCGCAAATGTTCGAGAACATGGTC
ATCCGCATGGCCCAGATGGGTCAGGTGCGTGGAAAACTTGATGACGCCCA
GTTCGTCAGCATCCTCGAAAGCGTCAATGCTCAGATGCCGCAGAGCAAGT
CCTCCGTGAAATACGATCGGCGGCGGGCGGCCATCGATAGCGACGACGAC
GAGGATTACGGCTGCGCAAGCTTTCTAGACCAT

BO12142.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:48
Subject Length Description Subject Range Query Range Score Percent Strand
PDCD-5-RA 402 CG13072-PA 1..399 17..415 1995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:50
Subject Length Description Subject Range Query Range Score Percent Strand
PDCD-5-RA 650 CG13072-RA 137..535 17..415 1995 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16231196..16231416 415..195 1105 100 Minus
3L 28110227 3L 16231474..16231588 194..80 575 100 Minus
3L 28110227 3L 16231839..16231902 80..17 320 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:39:48 has no hits.

BO12142.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:00 Download gff for BO12142.complete
Subject Subject Range Query Range Percent Splice Strand
PDCD-5-RA 1..402 17..418 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:20 Download gff for BO12142.complete
Subject Subject Range Query Range Percent Splice Strand
PDCD-5-RA 127..529 9..415 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:28 Download gff for BO12142.complete
Subject Subject Range Query Range Percent Splice Strand
PDCD-5-RA 137..535 17..417 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:00 Download gff for BO12142.complete
Subject Subject Range Query Range Percent Splice Strand
PDCD-5-RA 127..529 9..415 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:04 Download gff for BO12142.complete
Subject Subject Range Query Range Percent Splice Strand
PDCD-5-RA 137..535 17..417 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:04 Download gff for BO12142.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16231193..16231416 195..417 99 <- Minus
3L 16231474..16231588 80..194 100 <- Minus
3L 16231840..16231902 17..79 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:28 Download gff for BO12142.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16224293..16224516 195..417 99 <- Minus
arm_3L 16224574..16224688 80..194 100 <- Minus
arm_3L 16224940..16225002 17..79 100   Minus

BO12142.pep Sequence

Translation from 16 to 433

> BO12142.pep
MSDSDLDALRAQRMSQMQSQFGGGNDAEKQQAQQEQMRAQEEMKHSILSQ
VLDQQARARLNTLKVSKPEKAQMFENMVIRMAQMGQVRGKLDDAQFVSIL
ESVNAQMPQSKSSVKYDRRRAAIDSDDDEDYGCASFLDH

BO12142.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
PDCD-5-PA 133 CG13072-PA 1..133 1..133 661 100 Plus