Clone BO12143 Report

Search the DGRC for BO12143

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG5585-RA
Protein status:BO12143.pep: validated full length
Sequenced Size:1501

Clone Sequence Records

BO12143.3prime Sequence

889 bp (793 high quality bases) assembled on 2006-04-20

> BO12143.3prime
ATGGTCTAGAAAGCTTGCTTTCTTGGTACGTCCGGCGGCCTTTTTGCCAC
CCACGGGCTGTTGTTTATCTTTGCTGGCCTTGCTAGAAATGAGCGGATGC
GTTTCATCAGTGGGTGCATCAGGTAAGCTGACATCATAGAGCTGCATGCG
TCGTCGCTTGGAAGCCATTATGTCGTCCTCATAGTCATGCGGTTCCATGT
GGCCAAGCATAACTGCACTGGGCTCCAGTCCGTCCTGACCGGTCCAGCCA
TCCTCGGGATCCTCCACCTCTGGTGCCATTGGCAAAAACTGCAGCGCATT
CTCGTCCTCGCCCTCTTCGTCGGAGGAGCAAAAGGCAGCCACCGGCTCCA
CTTTCTGCACGTCTACCTCAATTTCCTCGTCCTGTTGCGCGTCTGCATTC
AGATCCACAGACTTGTCTTCGTCCGCAATGTCGAACTCTGACTCCCGCTC
TTCGTACTCTACGTTTTCGTCTAATTCCTTGAAATCTGGTGCAAAGGCAG
ACCAGTTTTCCACTTGATTTTGGGCCCAAATGGATACCAGTCCGGAGCTA
ATGCTGGCAATAATAGGCCGCACAGGATGCCACACCACGTCCAAGAGCAG
CTCACCCTTGGTGCCATGCAGGATCTTCACCAGGTTTCCAATAGACTTTT
CCCATATGTAAAGAGCATGCTGGCGAGCACTGCCAGCGCAAATGTACTCC
CCATCACCGGAGAAGCAGCACTTTTTCCAGGTGGTTTTATTGACCAAGTC
CTGTAGCTTTTGTATAGGTTCCGGTTCGCCGTCTTTGCCTAGAGTGATTA
TTTCTTTTGAGTCGTAAACACGAATAACTCGATCTGAGGTGTTGATTAGA
AATGCGTCTCCACGCCTCGCAAACTCGATGCTTTTACAG

BO12143.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5585-PA 1470 CG5585-RA 601..1467 885..19 4335 100 Minus
CG6434-PA 636 CG6434-RA 220..508 885..597 1420 99.6 Minus
CG6434-PA 636 CG6434-RA 516..552 105..69 135 94.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
Rbbp5-RA 1853 CG5585-RA 634..1500 885..19 4335 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20346244..20346875 105..736 3160 100 Plus
3L 28110227 3L 20322505..20322644 597..736 700 100 Plus
3L 28110227 3L 20346935..20347054 737..856 600 100 Plus
3L 28110227 3L 20322704..20322823 737..856 585 99.2 Plus
3L 28110227 3L 20346089..20346175 19..105 435 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:06:17 has no hits.

BO12143.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:19 Download gff for BO12143.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5585-PA 596..1470 15..889 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:38 Download gff for BO12143.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5585-PA 596..1470 15..889 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:51:03 Download gff for BO12143.3prime
Subject Subject Range Query Range Percent Splice Strand
Rbbp5-RA 629..1503 15..889 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:20:20 Download gff for BO12143.3prime
Subject Subject Range Query Range Percent Splice Strand
Rbbp5-RA 629..1503 15..889 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:20:20 Download gff for BO12143.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20346085..20346174 15..104 97 <- Plus
3L 20346244..20346875 105..736 100 <- Plus
3L 20346935..20347054 737..856 100 <- Plus
3L 20347108..20347141 857..889 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:51:03 Download gff for BO12143.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20340035..20340154 737..856 100 <- Plus
arm_3L 20339185..20339274 15..104 97 <- Plus
arm_3L 20339344..20339975 105..736 100 <- Plus
arm_3L 20340208..20340241 857..889 97   Plus

BO12143.5prime Sequence

887 bp (793 high quality bases) assembled on 2006-04-20

> BO12143.5prime
GAAGTTATCAGTCGACATGAATTTGGAGCTACTAGAATCTTTCGGACAAA
ACTACCCAGAGGAGTTCGACGGCTCGCTGGATTGCATTTCGTTGGCCGTG
ACGTGTGCCTTTAACAAATACGGAACCCTTTTGGCCGTGGGATGCAATGA
TGGCCGCATTGTAATCTGGGATTTTCTGACGAGGGGCATTGCCAAGATTA
TTTCGGCCCATGTGCATCCCGTTTGCAGTCTCAGTTGGACCAGGAATGGT
CACAAGTTACTTTCAGCTTCCACGGACAACAATGTGTGCATTTGGGATGT
GCTAACCGGCGAACTGGAACACAAGTATAGGTTTCCATCGCCTGTGCTGA
AAGTACAGTTCGATCCCCGAAATGACAACCGACTTTTGGTGTGCCCCATG
CGATATGCCGCCGTTCTTGTAGAGGTCGGCGGAACTCACCGCTGCCTGCC
CTTGGATTCCGATGGCGACTTGAACATCGTGGCTTCTTTCGATCGCAGAG
GCAAACACATCTACACAGGCAACGCCAAGGGAAAAATACTCGTACTGGAT
GTTGAAACCTTTGAGGTGGTCGCCAGTTTTCGCATTATTGTAGGCACCTC
AAGTGCAACGGCTGTAAAAAGCATCGAGTTTGCGAGGCGTGGAGACGCAT
TTCTAATCAACACCTCAGATCGAGTTATTCGTGTTTACGACTCANAAGAA
ATAATCACTCTAGGCAAAGACGGCGAACCGGAACCTATACAAAAGCTACA
GGACTTGGTCAATAAAACCACCTGGAAAAAGTGCTGCTTCTCCGGTGATG
GGGAGTACATTTGCGCTGGCAGTGCTCGCCAGCATGCTCTTTAATATGGG
GAAAAGCTATTGGAAACCTGGTGAAGATCCTGCATGG

BO12143.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5585-PA 1470 CG5585-RA 1..827 17..843 4116 99.8 Plus
CG6434-PA 636 CG6434-RA 1..446 398..843 2086 98.6 Plus
CG5585-PA 1470 CG5585-RA 842..872 857..887 155 100 Plus
CG6434-PA 636 CG6434-RA 461..491 857..887 155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
Rbbp5-RA 1853 CG5585-RA 34..905 17..887 4279 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20347613..20347835 256..34 1115 100 Minus
3L 28110227 3L 20347351..20347560 464..255 1050 100 Minus
3L 28110227 3L 20347108..20347289 645..464 910 100 Minus
3L 28110227 3L 20322877..20323058 645..464 895 99.5 Minus
3L 28110227 3L 20346935..20347054 765..646 589 99.2 Minus
3L 28110227 3L 20322704..20322823 765..646 574 98.3 Minus
3L 28110227 3L 20322522..20322644 887..766 520 96.7 Minus
3L 28110227 3L 20346753..20346875 887..766 520 96.7 Minus
3L 28110227 3L 20323120..20323202 464..382 370 96.4 Minus
Blast to na_te.dros performed on 2015-02-09 09:19:01 has no hits.

BO12143.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:20 Download gff for BO12143.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5585-PA 1..872 17..887 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:39 Download gff for BO12143.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5585-PA 1..872 17..887 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:18:02 Download gff for BO12143.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbbp5-RA 34..905 17..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:48:12 Download gff for BO12143.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbbp5-RA 34..905 17..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:48:12 Download gff for BO12143.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20346753..20346875 766..887 97 <- Minus
3L 20346935..20347054 646..765 99 <- Minus
3L 20347108..20347289 464..645 100 <- Minus
3L 20347352..20347558 257..463 100 <- Minus
3L 20347613..20347833 36..256 100 <- Minus
3L 20347891..20347909 17..35 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:18:02 Download gff for BO12143.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20339853..20339975 766..887 97 <- Minus
arm_3L 20340035..20340154 646..765 99 <- Minus
arm_3L 20340208..20340389 464..645 100 <- Minus
arm_3L 20340452..20340658 257..463 100 <- Minus
arm_3L 20340713..20340933 36..256 100 <- Minus
arm_3L 20340991..20341009 17..35 100   Minus

BO12143.complete Sequence

1501 bp assembled on 2006-10-11

GenBank Submission: FJ632329

> BO12143.complete
GAAGTTATCAGTCGACATGAATTTGGAGCTACTAGAATCTTTCGGACAAA
ACTACCCAGAGGAGTTCGACGGCTCGCTGGATTGCATTTCGTTGGCCGTG
ACGTGTGCCTTTAACAAATACGGAACCCTTTTGGCCGTGGGATGCAATGA
TGGCCGCATTGTAATCTGGGATTTTCTGACGAGGGGCATTGCCAAGATTA
TTTCGGCCCATGTGCATCCCGTTTGCAGTCTCAGTTGGACCAGGAATGGT
CACAAGTTACTTTCAGCTTCCACGGACAACAATGTGTGCATTTGGGATGT
GCTAACCGGCGAACTGGAACACAAGTATAGGTTTCCATCGCCTGTGCTGA
AAGTACAGTTCGATCCCCGAAATGACAACCGACTTTTGGTGTGCCCCATG
CGATATGCCGCCGTTCTTGTAGAGGTCGGCGGAACTCACCGCTGCCTGCC
CTTGGATTCCGATGGCGACTTGAACATCGTGGCTTCTTTCGATCGCAGAG
GCAAACACATCTACACAGGCAACGCCAAGGGAAAAATACTCGTACTGGAT
GTTGAAACCTTTGAGGTGGTCGCCAGTTTTCGCATTATTGTAGGCACCTC
AAGTGCAACGGCTGTAAAAAGCATCGAGTTTGCGAGGCGTGGAGACGCAT
TTCTAATCAACACCTCAGATCGAGTTATTCGTGTTTACGACTCAAAAGAA
ATAATCACTCTAGGCAAAGACGGCGAACCGGAACCTATACAAAAGCTACA
GGACTTGGTCAATAAAACCACCTGGAAAAAGTGCTGCTTCTCCGGTGATG
GGGAGTACATTTGCGCTGGCAGTGCTCGCCAGCATGCTCTTTACATATGG
GAAAAGTCTATTGGAAACCTGGTGAAGATCCTGCATGGCACCAAGGGTGA
GCTGCTCTTGGACGTGGTGTGGCATCCTGTGCGGCCTATTATTGCCAGCA
TTAGCTCCGGACTGGTATCCATTTGGGCCCAAAATCAAGTGGAAAACTGG
TCTGCCTTTGCACCAGATTTCAAGGAATTAGACGAAAACGTAGAGTACGA
AGAGCGGGAGTCAGAGTTCGACATTGCGGACGAAGACAAGTCTGTGGATC
TGAATGCAGACGCGCAACAGGACGAGGAAATTGAGGTAGACGTGCAGAAA
GTGGAGCCGGTGGCTGCCTTTTGCTCCTCCGACGAAGAGGGCGAGGACGA
GAATGCGCTGCAGTTTTTGCCAATGGCACCAGAGGTGGAGGATCCCGAGG
ATGGCTGGACCGGTCAGGACGGACTGGAGCCCAGTGCAGTTATGCTTGGC
CACATGGAACCGCATGACTATGAGGACGACATAATGGCTTCCAAGCGACG
ACGCATGCAGCTCTATGATGTCAGCTTACCTGATGCACCCACTGATGAAA
CGCATCCGCTCATTTCTAGCAAGGCCAGCAAAGATAAACAACAGCCCGTG
GGTGGCAAAAAGGCCGCCGGACGTACCAAGAAAGCAAGCTTTCTAGACCA
T

BO12143.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
Rbbp5-RA 1470 CG5585-PA 1..1467 17..1483 7335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
Rbbp5-RA 1853 CG5585-RA 34..1500 17..1483 7335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20346244..20346875 1397..766 3160 100 Minus
3L 28110227 3L 20347613..20347835 256..34 1115 100 Minus
3L 28110227 3L 20347351..20347560 464..255 1050 100 Minus
3L 28110227 3L 20347108..20347289 645..464 910 100 Minus
3L 28110227 3L 20322877..20323058 645..464 895 99.5 Minus
3L 28110227 3L 20322505..20322644 905..766 700 100 Minus
3L 28110227 3L 20346935..20347054 765..646 600 100 Minus
3L 28110227 3L 20322704..20322823 765..646 585 99.2 Minus
3L 28110227 3L 20346089..20346175 1483..1397 435 100 Minus
3L 28110227 3L 20323120..20323202 464..382 370 96.4 Minus
Blast to na_te.dros performed on 2014-11-27 10:59:54 has no hits.

BO12143.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:21 Download gff for BO12143.complete
Subject Subject Range Query Range Percent Splice Strand
CG5585-RA 1..1470 17..1487 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:03 Download gff for BO12143.complete
Subject Subject Range Query Range Percent Splice Strand
CG5585-RA 31..1500 17..1487 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:57:16 Download gff for BO12143.complete
Subject Subject Range Query Range Percent Splice Strand
Rbbp5-RA 34..1500 17..1485 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:22 Download gff for BO12143.complete
Subject Subject Range Query Range Percent Splice Strand
CG5585-RA 31..1500 17..1487 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:11 Download gff for BO12143.complete
Subject Subject Range Query Range Percent Splice Strand
Rbbp5-RA 34..1500 17..1485 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:11 Download gff for BO12143.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20347352..20347558 257..463 100 <- Minus
3L 20347613..20347833 36..256 100 <- Minus
3L 20347891..20347909 17..35 100   Minus
3L 20346087..20346174 1398..1485 97 <- Minus
3L 20346244..20346875 766..1397 100 <- Minus
3L 20346935..20347054 646..765 100 <- Minus
3L 20347108..20347289 464..645 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:57:16 Download gff for BO12143.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20339187..20339274 1398..1485 97 <- Minus
arm_3L 20339344..20339975 766..1397 100 <- Minus
arm_3L 20340035..20340154 646..765 100 <- Minus
arm_3L 20340208..20340389 464..645 100 <- Minus
arm_3L 20340452..20340658 257..463 100 <- Minus
arm_3L 20340713..20340933 36..256 100 <- Minus
arm_3L 20340991..20341009 17..35 100   Minus

BO12143.pep Sequence

Translation from 16 to 1501

> BO12143.pep
MNLELLESFGQNYPEEFDGSLDCISLAVTCAFNKYGTLLAVGCNDGRIVI
WDFLTRGIAKIISAHVHPVCSLSWTRNGHKLLSASTDNNVCIWDVLTGEL
EHKYRFPSPVLKVQFDPRNDNRLLVCPMRYAAVLVEVGGTHRCLPLDSDG
DLNIVASFDRRGKHIYTGNAKGKILVLDVETFEVVASFRIIVGTSSATAV
KSIEFARRGDAFLINTSDRVIRVYDSKEIITLGKDGEPEPIQKLQDLVNK
TTWKKCCFSGDGEYICAGSARQHALYIWEKSIGNLVKILHGTKGELLLDV
VWHPVRPIIASISSGLVSIWAQNQVENWSAFAPDFKELDENVEYEERESE
FDIADEDKSVDLNADAQQDEEIEVDVQKVEPVAAFCSSDEEGEDENALQF
LPMAPEVEDPEDGWTGQDGLEPSAVMLGHMEPHDYEDDIMASKRRRMQLY
DVSLPDAPTDETHPLISSKASKDKQQPVGGKKAAGRTKKASFLDH

BO12143.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:41
Subject Length Description Subject Range Query Range Score Percent Strand
Rbbp5-PA 489 CG5585-PA 1..489 1..489 2574 100 Plus
CG3909-PA 331 CG3909-PA 55..284 39..281 169 24.3 Plus
CG3436-PC 347 CG3436-PC 60..336 29..314 156 23.1 Plus
CG3436-PA 347 CG3436-PA 60..336 29..314 156 23.1 Plus