Clone Sequence Records
BO12143.3prime Sequence
889 bp (793 high quality bases) assembled on 2006-04-20
> BO12143.3prime
ATGGTCTAGAAAGCTTGCTTTCTTGGTACGTCCGGCGGCCTTTTTGCCAC
CCACGGGCTGTTGTTTATCTTTGCTGGCCTTGCTAGAAATGAGCGGATGC
GTTTCATCAGTGGGTGCATCAGGTAAGCTGACATCATAGAGCTGCATGCG
TCGTCGCTTGGAAGCCATTATGTCGTCCTCATAGTCATGCGGTTCCATGT
GGCCAAGCATAACTGCACTGGGCTCCAGTCCGTCCTGACCGGTCCAGCCA
TCCTCGGGATCCTCCACCTCTGGTGCCATTGGCAAAAACTGCAGCGCATT
CTCGTCCTCGCCCTCTTCGTCGGAGGAGCAAAAGGCAGCCACCGGCTCCA
CTTTCTGCACGTCTACCTCAATTTCCTCGTCCTGTTGCGCGTCTGCATTC
AGATCCACAGACTTGTCTTCGTCCGCAATGTCGAACTCTGACTCCCGCTC
TTCGTACTCTACGTTTTCGTCTAATTCCTTGAAATCTGGTGCAAAGGCAG
ACCAGTTTTCCACTTGATTTTGGGCCCAAATGGATACCAGTCCGGAGCTA
ATGCTGGCAATAATAGGCCGCACAGGATGCCACACCACGTCCAAGAGCAG
CTCACCCTTGGTGCCATGCAGGATCTTCACCAGGTTTCCAATAGACTTTT
CCCATATGTAAAGAGCATGCTGGCGAGCACTGCCAGCGCAAATGTACTCC
CCATCACCGGAGAAGCAGCACTTTTTCCAGGTGGTTTTATTGACCAAGTC
CTGTAGCTTTTGTATAGGTTCCGGTTCGCCGTCTTTGCCTAGAGTGATTA
TTTCTTTTGAGTCGTAAACACGAATAACTCGATCTGAGGTGTTGATTAGA
AATGCGTCTCCACGCCTCGCAAACTCGATGCTTTTACAG
BO12143.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5585-PA | 1470 | CG5585-RA | 601..1467 | 885..19 | 4335 | 100 | Minus |
CG6434-PA | 636 | CG6434-RA | 220..508 | 885..597 | 1420 | 99.6 | Minus |
CG6434-PA | 636 | CG6434-RA | 516..552 | 105..69 | 135 | 94.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:06:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbbp5-RA | 1853 | CG5585-RA | 634..1500 | 885..19 | 4335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:06:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20346244..20346875 | 105..736 | 3160 | 100 | Plus |
3L | 28110227 | 3L | 20322505..20322644 | 597..736 | 700 | 100 | Plus |
3L | 28110227 | 3L | 20346935..20347054 | 737..856 | 600 | 100 | Plus |
3L | 28110227 | 3L | 20322704..20322823 | 737..856 | 585 | 99.2 | Plus |
3L | 28110227 | 3L | 20346089..20346175 | 19..105 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:06:17 has no hits.
BO12143.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:19 Download gff for
BO12143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5585-PA | 596..1470 | 15..889 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:38 Download gff for
BO12143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5585-PA | 596..1470 | 15..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:51:03 Download gff for
BO12143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbbp5-RA | 629..1503 | 15..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:20:20 Download gff for
BO12143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbbp5-RA | 629..1503 | 15..889 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:20:20 Download gff for
BO12143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20346085..20346174 | 15..104 | 97 | <- | Plus |
3L | 20346244..20346875 | 105..736 | 100 | <- | Plus |
3L | 20346935..20347054 | 737..856 | 100 | <- | Plus |
3L | 20347108..20347141 | 857..889 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:51:03 Download gff for
BO12143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20340035..20340154 | 737..856 | 100 | <- | Plus |
arm_3L | 20339185..20339274 | 15..104 | 97 | <- | Plus |
arm_3L | 20339344..20339975 | 105..736 | 100 | <- | Plus |
arm_3L | 20340208..20340241 | 857..889 | 97 | | Plus |
BO12143.5prime Sequence
887 bp (793 high quality bases) assembled on 2006-04-20
> BO12143.5prime
GAAGTTATCAGTCGACATGAATTTGGAGCTACTAGAATCTTTCGGACAAA
ACTACCCAGAGGAGTTCGACGGCTCGCTGGATTGCATTTCGTTGGCCGTG
ACGTGTGCCTTTAACAAATACGGAACCCTTTTGGCCGTGGGATGCAATGA
TGGCCGCATTGTAATCTGGGATTTTCTGACGAGGGGCATTGCCAAGATTA
TTTCGGCCCATGTGCATCCCGTTTGCAGTCTCAGTTGGACCAGGAATGGT
CACAAGTTACTTTCAGCTTCCACGGACAACAATGTGTGCATTTGGGATGT
GCTAACCGGCGAACTGGAACACAAGTATAGGTTTCCATCGCCTGTGCTGA
AAGTACAGTTCGATCCCCGAAATGACAACCGACTTTTGGTGTGCCCCATG
CGATATGCCGCCGTTCTTGTAGAGGTCGGCGGAACTCACCGCTGCCTGCC
CTTGGATTCCGATGGCGACTTGAACATCGTGGCTTCTTTCGATCGCAGAG
GCAAACACATCTACACAGGCAACGCCAAGGGAAAAATACTCGTACTGGAT
GTTGAAACCTTTGAGGTGGTCGCCAGTTTTCGCATTATTGTAGGCACCTC
AAGTGCAACGGCTGTAAAAAGCATCGAGTTTGCGAGGCGTGGAGACGCAT
TTCTAATCAACACCTCAGATCGAGTTATTCGTGTTTACGACTCANAAGAA
ATAATCACTCTAGGCAAAGACGGCGAACCGGAACCTATACAAAAGCTACA
GGACTTGGTCAATAAAACCACCTGGAAAAAGTGCTGCTTCTCCGGTGATG
GGGAGTACATTTGCGCTGGCAGTGCTCGCCAGCATGCTCTTTAATATGGG
GAAAAGCTATTGGAAACCTGGTGAAGATCCTGCATGG
BO12143.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5585-PA | 1470 | CG5585-RA | 1..827 | 17..843 | 4116 | 99.8 | Plus |
CG6434-PA | 636 | CG6434-RA | 1..446 | 398..843 | 2086 | 98.6 | Plus |
CG5585-PA | 1470 | CG5585-RA | 842..872 | 857..887 | 155 | 100 | Plus |
CG6434-PA | 636 | CG6434-RA | 461..491 | 857..887 | 155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:19:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbbp5-RA | 1853 | CG5585-RA | 34..905 | 17..887 | 4279 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:18:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20347613..20347835 | 256..34 | 1115 | 100 | Minus |
3L | 28110227 | 3L | 20347351..20347560 | 464..255 | 1050 | 100 | Minus |
3L | 28110227 | 3L | 20347108..20347289 | 645..464 | 910 | 100 | Minus |
3L | 28110227 | 3L | 20322877..20323058 | 645..464 | 895 | 99.5 | Minus |
3L | 28110227 | 3L | 20346935..20347054 | 765..646 | 589 | 99.2 | Minus |
3L | 28110227 | 3L | 20322704..20322823 | 765..646 | 574 | 98.3 | Minus |
3L | 28110227 | 3L | 20322522..20322644 | 887..766 | 520 | 96.7 | Minus |
3L | 28110227 | 3L | 20346753..20346875 | 887..766 | 520 | 96.7 | Minus |
3L | 28110227 | 3L | 20323120..20323202 | 464..382 | 370 | 96.4 | Minus |
Blast to na_te.dros performed on 2015-02-09 09:19:01 has no hits.
BO12143.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:20 Download gff for
BO12143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5585-PA | 1..872 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:39 Download gff for
BO12143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5585-PA | 1..872 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:18:02 Download gff for
BO12143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbbp5-RA | 34..905 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:48:12 Download gff for
BO12143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbbp5-RA | 34..905 | 17..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:48:12 Download gff for
BO12143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20346753..20346875 | 766..887 | 97 | <- | Minus |
3L | 20346935..20347054 | 646..765 | 99 | <- | Minus |
3L | 20347108..20347289 | 464..645 | 100 | <- | Minus |
3L | 20347352..20347558 | 257..463 | 100 | <- | Minus |
3L | 20347613..20347833 | 36..256 | 100 | <- | Minus |
3L | 20347891..20347909 | 17..35 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:18:02 Download gff for
BO12143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20339853..20339975 | 766..887 | 97 | <- | Minus |
arm_3L | 20340035..20340154 | 646..765 | 99 | <- | Minus |
arm_3L | 20340208..20340389 | 464..645 | 100 | <- | Minus |
arm_3L | 20340452..20340658 | 257..463 | 100 | <- | Minus |
arm_3L | 20340713..20340933 | 36..256 | 100 | <- | Minus |
arm_3L | 20340991..20341009 | 17..35 | 100 | | Minus |
BO12143.complete Sequence
1501 bp assembled on 2006-10-11
GenBank Submission: FJ632329
> BO12143.complete
GAAGTTATCAGTCGACATGAATTTGGAGCTACTAGAATCTTTCGGACAAA
ACTACCCAGAGGAGTTCGACGGCTCGCTGGATTGCATTTCGTTGGCCGTG
ACGTGTGCCTTTAACAAATACGGAACCCTTTTGGCCGTGGGATGCAATGA
TGGCCGCATTGTAATCTGGGATTTTCTGACGAGGGGCATTGCCAAGATTA
TTTCGGCCCATGTGCATCCCGTTTGCAGTCTCAGTTGGACCAGGAATGGT
CACAAGTTACTTTCAGCTTCCACGGACAACAATGTGTGCATTTGGGATGT
GCTAACCGGCGAACTGGAACACAAGTATAGGTTTCCATCGCCTGTGCTGA
AAGTACAGTTCGATCCCCGAAATGACAACCGACTTTTGGTGTGCCCCATG
CGATATGCCGCCGTTCTTGTAGAGGTCGGCGGAACTCACCGCTGCCTGCC
CTTGGATTCCGATGGCGACTTGAACATCGTGGCTTCTTTCGATCGCAGAG
GCAAACACATCTACACAGGCAACGCCAAGGGAAAAATACTCGTACTGGAT
GTTGAAACCTTTGAGGTGGTCGCCAGTTTTCGCATTATTGTAGGCACCTC
AAGTGCAACGGCTGTAAAAAGCATCGAGTTTGCGAGGCGTGGAGACGCAT
TTCTAATCAACACCTCAGATCGAGTTATTCGTGTTTACGACTCAAAAGAA
ATAATCACTCTAGGCAAAGACGGCGAACCGGAACCTATACAAAAGCTACA
GGACTTGGTCAATAAAACCACCTGGAAAAAGTGCTGCTTCTCCGGTGATG
GGGAGTACATTTGCGCTGGCAGTGCTCGCCAGCATGCTCTTTACATATGG
GAAAAGTCTATTGGAAACCTGGTGAAGATCCTGCATGGCACCAAGGGTGA
GCTGCTCTTGGACGTGGTGTGGCATCCTGTGCGGCCTATTATTGCCAGCA
TTAGCTCCGGACTGGTATCCATTTGGGCCCAAAATCAAGTGGAAAACTGG
TCTGCCTTTGCACCAGATTTCAAGGAATTAGACGAAAACGTAGAGTACGA
AGAGCGGGAGTCAGAGTTCGACATTGCGGACGAAGACAAGTCTGTGGATC
TGAATGCAGACGCGCAACAGGACGAGGAAATTGAGGTAGACGTGCAGAAA
GTGGAGCCGGTGGCTGCCTTTTGCTCCTCCGACGAAGAGGGCGAGGACGA
GAATGCGCTGCAGTTTTTGCCAATGGCACCAGAGGTGGAGGATCCCGAGG
ATGGCTGGACCGGTCAGGACGGACTGGAGCCCAGTGCAGTTATGCTTGGC
CACATGGAACCGCATGACTATGAGGACGACATAATGGCTTCCAAGCGACG
ACGCATGCAGCTCTATGATGTCAGCTTACCTGATGCACCCACTGATGAAA
CGCATCCGCTCATTTCTAGCAAGGCCAGCAAAGATAAACAACAGCCCGTG
GGTGGCAAAAAGGCCGCCGGACGTACCAAGAAAGCAAGCTTTCTAGACCA
T
BO12143.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:59:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbbp5-RA | 1470 | CG5585-PA | 1..1467 | 17..1483 | 7335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:59:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbbp5-RA | 1853 | CG5585-RA | 34..1500 | 17..1483 | 7335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:59:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20346244..20346875 | 1397..766 | 3160 | 100 | Minus |
3L | 28110227 | 3L | 20347613..20347835 | 256..34 | 1115 | 100 | Minus |
3L | 28110227 | 3L | 20347351..20347560 | 464..255 | 1050 | 100 | Minus |
3L | 28110227 | 3L | 20347108..20347289 | 645..464 | 910 | 100 | Minus |
3L | 28110227 | 3L | 20322877..20323058 | 645..464 | 895 | 99.5 | Minus |
3L | 28110227 | 3L | 20322505..20322644 | 905..766 | 700 | 100 | Minus |
3L | 28110227 | 3L | 20346935..20347054 | 765..646 | 600 | 100 | Minus |
3L | 28110227 | 3L | 20322704..20322823 | 765..646 | 585 | 99.2 | Minus |
3L | 28110227 | 3L | 20346089..20346175 | 1483..1397 | 435 | 100 | Minus |
3L | 28110227 | 3L | 20323120..20323202 | 464..382 | 370 | 96.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:59:54 has no hits.
BO12143.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:21 Download gff for
BO12143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5585-RA | 1..1470 | 17..1487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:03 Download gff for
BO12143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5585-RA | 31..1500 | 17..1487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:57:16 Download gff for
BO12143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbbp5-RA | 34..1500 | 17..1485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:22 Download gff for
BO12143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5585-RA | 31..1500 | 17..1487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:11 Download gff for
BO12143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbbp5-RA | 34..1500 | 17..1485 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:11 Download gff for
BO12143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20347352..20347558 | 257..463 | 100 | <- | Minus |
3L | 20347613..20347833 | 36..256 | 100 | <- | Minus |
3L | 20347891..20347909 | 17..35 | 100 | | Minus |
3L | 20346087..20346174 | 1398..1485 | 97 | <- | Minus |
3L | 20346244..20346875 | 766..1397 | 100 | <- | Minus |
3L | 20346935..20347054 | 646..765 | 100 | <- | Minus |
3L | 20347108..20347289 | 464..645 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:57:16 Download gff for
BO12143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20339187..20339274 | 1398..1485 | 97 | <- | Minus |
arm_3L | 20339344..20339975 | 766..1397 | 100 | <- | Minus |
arm_3L | 20340035..20340154 | 646..765 | 100 | <- | Minus |
arm_3L | 20340208..20340389 | 464..645 | 100 | <- | Minus |
arm_3L | 20340452..20340658 | 257..463 | 100 | <- | Minus |
arm_3L | 20340713..20340933 | 36..256 | 100 | <- | Minus |
arm_3L | 20340991..20341009 | 17..35 | 100 | | Minus |
BO12143.pep Sequence
Translation from 16 to 1501
> BO12143.pep
MNLELLESFGQNYPEEFDGSLDCISLAVTCAFNKYGTLLAVGCNDGRIVI
WDFLTRGIAKIISAHVHPVCSLSWTRNGHKLLSASTDNNVCIWDVLTGEL
EHKYRFPSPVLKVQFDPRNDNRLLVCPMRYAAVLVEVGGTHRCLPLDSDG
DLNIVASFDRRGKHIYTGNAKGKILVLDVETFEVVASFRIIVGTSSATAV
KSIEFARRGDAFLINTSDRVIRVYDSKEIITLGKDGEPEPIQKLQDLVNK
TTWKKCCFSGDGEYICAGSARQHALYIWEKSIGNLVKILHGTKGELLLDV
VWHPVRPIIASISSGLVSIWAQNQVENWSAFAPDFKELDENVEYEERESE
FDIADEDKSVDLNADAQQDEEIEVDVQKVEPVAAFCSSDEEGEDENALQF
LPMAPEVEDPEDGWTGQDGLEPSAVMLGHMEPHDYEDDIMASKRRRMQLY
DVSLPDAPTDETHPLISSKASKDKQQPVGGKKAAGRTKKASFLDH
BO12143.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbbp5-PA | 489 | CG5585-PA | 1..489 | 1..489 | 2574 | 100 | Plus |
CG3909-PA | 331 | CG3909-PA | 55..284 | 39..281 | 169 | 24.3 | Plus |
CG3436-PC | 347 | CG3436-PC | 60..336 | 29..314 | 156 | 23.1 | Plus |
CG3436-PA | 347 | CG3436-PA | 60..336 | 29..314 | 156 | 23.1 | Plus |