Clone Sequence Records
BO12146.3prime Sequence
701 bp (657 high quality bases) assembled on 2006-04-20
> BO12146.3prime
ATGGTCTAGAAAGCTTGCGAAGGTAAAGGGTTTGGCAGGCTTGTTGTAGT
TGTAGCCATCGGGTCCCAGAGAGCCTGCCTCATCGCCACCACTGGTGGGT
GGTGGTGGTCCGTACTCCGGAGTTGGTGCAGGTGGTGCTGGCGGACGTGG
CTGATAGGTGGGTCCTGGAGCAGGTGCAGGTGGTGCAGGAGGTTGTGGCT
GATATGTGGGTGCCGGTGGTGCAGGAGGACTCGGGGGGCGTGGCTGGTAA
GTGGGTCCTGGTGCAGGCGCTGGTGGTGCTGGTGGGCGTGGTTGATAAGT
AGGTCCTGGTGCAGGCGCTGGTGGTGCTGGTGGGCGTGGCTGGTATGTGG
GTCCAGCGGGAGGTGCAGGCGGTGGTGGTCCGTATTCCGGCACTGGTGCA
GTTGGCTGCGGTTGTGTCGGGGTGACCTCATTCTCTCCAGGAGGTGGCAA
ATACTCAGATCCTGGCTGTGGCCGTGGTGGCTGTGGGCGTGGCGGCTGTG
GTCTTGGCGGCTGTGGTGCCGGCTGAGCGGGTCCTGGTCCTGGTGGTGGT
GTAGGAGGGCCGTATCCTGGAGTAGGCTGTGGCTTAGGCGGAGGTGGTGG
CGGTGGTGGTCCGTAGCCAGGAGTTGGCTGGGGCCTAGGTGGTGGTGGTG
GAGGCGGCTGAGGACGCGAGGGCGTTGGACGTGGCTTTGGCTGATCTGGA
G
BO12146.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15021-PA | 1263 | CG15021-RA | 578..1260 | 701..19 | 3415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:58:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15021-RA | 1536 | CG15021-RA | 746..1428 | 701..19 | 3415 | 100 | Minus |
| CG15021-RA | 1536 | CG15021-RA | 1068..1274 | 331..125 | 295 | 77.3 | Minus |
| CG15021-RA | 1536 | CG15021-RA | 1095..1175 | 211..131 | 210 | 84 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:58:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4437521..4438203 | 701..19 | 3415 | 100 | Minus |
| 3L | 28110227 | 3L | 4437843..4437938 | 331..236 | 255 | 84.4 | Minus |
| 3L | 28110227 | 3L | 4437870..4437950 | 211..131 | 210 | 84 | Minus |
Blast to na_te.dros performed on 2015-02-06 12:58:16 has no hits.
BO12146.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:25 Download gff for
BO12146.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15021-PA | 578..1263 | 18..701 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:46 Download gff for
BO12146.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15021-PA | 578..1263 | 18..701 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:06:09 Download gff for
BO12146.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15021-RA | 746..1437 | 11..701 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:45:31 Download gff for
BO12146.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15021-RA | 746..1437 | 11..701 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:45:31 Download gff for
BO12146.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4437521..4438212 | 11..701 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:06:09 Download gff for
BO12146.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4437521..4438212 | 11..701 | 99 | | Minus |
BO12146.5prime Sequence
898 bp (853 high quality bases) assembled on 2006-04-20
> BO12146.5prime
GAAGTTATCAGTCGACATGCGCTGTTTTCTGCCTCTGGTGGCCCTGCTCT
TGGCAGCGGGTGTCCACGCGGATGTCTCCCACCTGGACACAGATCTCCAG
GAGGATGGCTATCATTACAAGCAGCCGTCGGTGCCTTTTCCGCCTCCGGG
ATCGGGAAATGGCATTGAGGATTCGGGCATAGGCCCAGGACCTGCTCCCT
CGGCGCCGGCGCCGTCCTATGGGCCCCCGCAGACGCGTCCTCCTCCTCCT
CCTCCACCGCCACAGCCGACTCCACCAGCTCCTCGTCCTTCCTATGGACC
TCCTCAGACTCAGCCACCACGCCCTCCACCGCAGCCAACTCCTTCGGCTC
CTGCTCCGCCACCTCCATCCTATGGTCCTCCGCAGACGCCTCCACCACGT
CCTCCACCACAGCCAACTCCATCGGCTCCCGCTCCACCACCATCTTATGG
ACCGCCGCAGACACCACCACCTCGTCCTCCACCGCAGCCAACACCTTCGG
CTCCAGCTCCATCCTATGGACCTCCTCAGCCTCAGCCACCGGCACCACAG
CCACCATCGCCACCATCGCCACAACCTGGGCCAGAGTACCTGCCTCCAGA
TCAGCCAAAGCCACGTCCAACGCCCTCGCGTCCTCAGCCGCCTCCACCAC
CACCACCTAGGCCCCAGCCAACTCCTGGCTACGGACCACCACCGCCACCA
CCTCCGCCTAAGCCACAGCCTACTCCAGGATACGGCCCTCCTACACCACC
ACCAGGACCAGGACCCGCTCAGCCGGCACCACAGCCGCCAAGACCACAGC
CGCCACGCCCACAGCCACCACGGCCACAGCCAGGATCTGAGTATTTGCCA
CCTCCTGGAGAGAATGAGGTCACCCCGACACAACCGCAGCCAACTGCA
BO12146.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15021-PA | 1263 | CG15021-RA | 1..882 | 17..898 | 4410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:27:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15021-RA | 1536 | CG15021-RA | 162..1050 | 10..898 | 4415 | 99.8 | Plus |
| CG15021-RA | 1536 | CG15021-RA | 438..588 | 364..511 | 385 | 84.1 | Plus |
| CG15021-RA | 1536 | CG15021-RA | 516..663 | 286..436 | 385 | 84.1 | Plus |
| CG15021-RA | 1536 | CG15021-RA | 367..509 | 368..510 | 250 | 78.3 | Plus |
| CG15021-RA | 1536 | CG15021-RA | 520..662 | 215..357 | 250 | 78.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:26:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4436946..4437825 | 19..898 | 4400 | 100 | Plus |
| 3L | 28110227 | 3L | 4437213..4437363 | 364..511 | 360 | 84.1 | Plus |
| 3L | 28110227 | 3L | 4437291..4437438 | 286..436 | 360 | 84.1 | Plus |
| 3L | 28110227 | 3L | 4437142..4437284 | 368..510 | 250 | 78.3 | Plus |
| 3L | 28110227 | 3L | 4437295..4437437 | 215..357 | 250 | 78.3 | Plus |
Blast to na_te.dros performed on 2015-02-02 11:27:00 has no hits.
BO12146.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:26 Download gff for
BO12146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15021-PA | 1..881 | 17..897 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:48 Download gff for
BO12146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15021-PA | 1..881 | 17..897 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:18:51 Download gff for
BO12146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15021-RA | 155..1049 | 3..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:30:46 Download gff for
BO12146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15021-RA | 155..1049 | 3..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:30:46 Download gff for
BO12146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4436946..4437824 | 19..897 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:18:51 Download gff for
BO12146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4436946..4437824 | 19..897 | 100 | | Plus |
BO12146.complete Sequence
1294 bp assembled on 2006-10-11
GenBank Submission: FJ638694
> BO12146.complete
GAAGTTATCAGTCGACATGCGCTGTTTTCTGCCTCTGGTGGCCCTGCTCT
TGGCAGCGGGTGTCCACGCGGATGTCTCCCACCTGGACACAGATCTCCAG
GAGGATGGCTATCATTACAAGCAGCCGTCGGTGCCTTTTCCGCCTCCGGG
ATCGGGAAATGGCATTGAGGATTCGGGCATAGGCCCAGGACCTGCTCCCT
CGGCGCCGGCGCCGTCCTATGGGCCCCCGCAGACGCGTCCTCCTCCTCCT
CCTCCACCGCCACAGCCGACTCCACCAGCTCCTCGTCCTTCCTATGGACC
TCCTCAGACTCAGCCACCACGCCCTCCACCGCAGCCAACTCCTTCGGCTC
CTGCTCCGCCACCTCCATCCTATGGTCCTCCGCAGACGCCTCCACCACGT
CCTCCACCACAGCCAACTCCATCGGCTCCCGCTCCACCACCATCTTATGG
ACCGCCGCAGACACCACCACCTCGTCCTCCACCGCAGCCAACACCTTCGG
CTCCAGCTCCATCCTATGGACCTCCTCAGCCTCAGCCACCGGCACCACAG
CCACCATCGCCACCATCGCCACAACCTGGGCCAGAGTACCTGCCTCCAGA
TCAGCCAAAGCCACGTCCAACGCCCTCGCGTCCTCAGCCGCCTCCACCAC
CACCACCTAGGCCCCAGCCAACTCCTGGCTACGGACCACCACCGCCACCA
CCTCCGCCTAAGCCACAGCCTACTCCAGGATACGGCCCTCCTACACCACC
ACCAGGACCAGGACCCGCTCAGCCGGCACCACAGCCGCCAAGACCACAGC
CGCCACGCCCACAGCCACCACGGCCACAGCCAGGATCTGAGTATTTGCCA
CCTCCTGGAGAGAATGAGGTCACCCCGACACAACCGCAGCCAACTGCACC
AGTGCCGGAATACGGACCACCACCGCCTGCACCTCCCGCTGGACCCACAT
ACCAGCCACGCCCACCAGCACCACCAGCGCCTGCACCAGGACCTACTTAT
CAACCACGCCCACCAGCACCACCAGCGCCTGCACCAGGACCCACTTACCA
GCCACGCCCCCCGAGTCCTCCTGCACCACCGGCACCCACATATCAGCCAC
AACCTCCTGCACCACCTGCACCTGCTCCAGGACCCACCTATCAGCCACGT
CCGCCAGCACCACCTGCACCAACTCCGGAGTACGGACCACCACCACCCAC
CAGTGGTGGCGATGAGGCAGGCTCTCTGGGACCCGATGGCTACAACTACA
ACAAGCCTGCCAAACCCTTTACCTTCGCAAGCTTTCTAGACCAT
BO12146.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:34:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15021-RA | 1263 | CG15021-PA | 1..1260 | 17..1276 | 6300 | 100 | Plus |
| CG15021-RA | 1263 | CG15021-PA | 270..420 | 364..511 | 360 | 84.1 | Plus |
| CG15021-RA | 1263 | CG15021-PA | 348..495 | 286..436 | 360 | 84.1 | Plus |
| CG15021-RA | 1263 | CG15021-PA | 900..995 | 964..1059 | 255 | 84.4 | Plus |
| CG15021-RA | 1263 | CG15021-PA | 199..341 | 368..510 | 250 | 78.3 | Plus |
| CG15021-RA | 1263 | CG15021-PA | 352..494 | 215..357 | 250 | 78.3 | Plus |
| CG15021-RA | 1263 | CG15021-PA | 927..1007 | 1084..1164 | 210 | 84 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:34:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15021-RA | 1536 | CG15021-RA | 162..1428 | 10..1276 | 6305 | 99.8 | Plus |
| CG15021-RA | 1536 | CG15021-RA | 438..588 | 364..511 | 360 | 84.1 | Plus |
| CG15021-RA | 1536 | CG15021-RA | 516..663 | 286..436 | 360 | 84.1 | Plus |
| CG15021-RA | 1536 | CG15021-RA | 1068..1163 | 964..1059 | 255 | 84.4 | Plus |
| CG15021-RA | 1536 | CG15021-RA | 367..509 | 368..510 | 250 | 78.3 | Plus |
| CG15021-RA | 1536 | CG15021-RA | 520..662 | 215..357 | 250 | 78.3 | Plus |
| CG15021-RA | 1536 | CG15021-RA | 1095..1175 | 1084..1164 | 210 | 84 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:34:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4436946..4438203 | 19..1276 | 6290 | 100 | Plus |
| 3L | 28110227 | 3L | 4437213..4437363 | 364..511 | 360 | 84.1 | Plus |
| 3L | 28110227 | 3L | 4437291..4437438 | 286..436 | 360 | 84.1 | Plus |
| 3L | 28110227 | 3L | 4437843..4437938 | 964..1059 | 255 | 84.4 | Plus |
| 3L | 28110227 | 3L | 4437142..4437284 | 368..510 | 250 | 78.3 | Plus |
| 3L | 28110227 | 3L | 4437295..4437437 | 215..357 | 250 | 78.3 | Plus |
| 3L | 28110227 | 3L | 4437870..4437950 | 1084..1164 | 210 | 84 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:34:27 has no hits.
BO12146.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:22 Download gff for
BO12146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15021-RA | 1..1263 | 17..1277 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:06 Download gff for
BO12146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15021-RA | 155..1437 | 3..1284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:18:53 Download gff for
BO12146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15021-RA | 169..1428 | 17..1278 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:23 Download gff for
BO12146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15021-RA | 155..1437 | 3..1284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:00 Download gff for
BO12146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15021-RA | 169..1428 | 17..1278 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:00 Download gff for
BO12146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4436945..4438203 | 17..1278 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:18:53 Download gff for
BO12146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4436945..4438203 | 17..1278 | 99 | | Plus |
BO12146.pep Sequence
Translation from 16 to 1294
> BO12146.pep
MRCFLPLVALLLAAGVHADVSHLDTDLQEDGYHYKQPSVPFPPPGSGNGI
EDSGIGPGPAPSAPAPSYGPPQTRPPPPPPPPQPTPPAPRPSYGPPQTQP
PRPPPQPTPSAPAPPPPSYGPPQTPPPRPPPQPTPSAPAPPPSYGPPQTP
PPRPPPQPTPSAPAPSYGPPQPQPPAPQPPSPPSPQPGPEYLPPDQPKPR
PTPSRPQPPPPPPPRPQPTPGYGPPPPPPPPKPQPTPGYGPPTPPPGPGP
AQPAPQPPRPQPPRPQPPRPQPGSEYLPPPGENEVTPTQPQPTAPVPEYG
PPPPAPPAGPTYQPRPPAPPAPAPGPTYQPRPPAPPAPAPGPTYQPRPPS
PPAPPAPTYQPQPPAPPAPAPGPTYQPRPPAPPAPTPEYGPPPPTSGGDE
AGSLGPDGYNYNKPAKPFTFASFLDH
BO12146.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15021-PA | 420 | CG15021-PA | 1..420 | 1..420 | 2503 | 100 | Plus |
| CG13722-PB | 708 | CG13722-PB | 137..644 | 29..418 | 613 | 35.9 | Plus |
| CG13722-PB | 708 | CG13722-PB | 223..708 | 29..420 | 599 | 36.6 | Plus |
| CG13722-PB | 708 | CG13722-PB | 94..548 | 31..418 | 592 | 36.6 | Plus |
| CG13731-PB | 792 | CG13731-PB | 1..509 | 1..395 | 590 | 35 | Plus |
| CG13722-PB | 708 | CG13722-PB | 37..493 | 30..418 | 563 | 36 | Plus |
| CG13722-PB | 708 | CG13722-PB | 342..692 | 4..357 | 504 | 37 | Plus |
| CG13731-PB | 792 | CG13731-PB | 139..651 | 57..396 | 499 | 33.2 | Plus |
| CG13731-PB | 792 | CG13731-PB | 207..664 | 34..392 | 488 | 34.3 | Plus |
| CG13731-PB | 792 | CG13731-PB | 341..792 | 62..420 | 487 | 35 | Plus |
| Muc91C-PB | 949 | CG7709-PB | 153..538 | 37..417 | 483 | 34.4 | Plus |
| CG32241-PB | 415 | CG32241-PB | 4..413 | 7..359 | 467 | 35 | Plus |
| CG13722-PB | 708 | CG13722-PB | 29..436 | 87..418 | 426 | 34.4 | Plus |
| CG13731-PB | 792 | CG13731-PB | 35..256 | 191..419 | 345 | 38.8 | Plus |
| CG32241-PB | 415 | CG32241-PB | 34..315 | 167..418 | 312 | 32.5 | Plus |
