Clone Sequence Records
BO12148.3prime Sequence
626 bp (625 high quality bases) assembled on 2006-04-20
> BO12148.3prime
ATGGTCTAGAAAGCTTGCATCTGCATGGGTTCCTTCCCGAGTAGTGCTAC
CCGTTTCCGAGTTGCCTGTGCCAGTCTCTTTTCGGTCTCTATTGCTGGGC
CCAGCACCACTGGCATCGTGGCTTTCGCTGCTGTTTGGTGTGGACACTGC
GGTCTTTGTTGACTTGGGGGATTGGGATTCCTGGGTCTGTGGACCAGTTT
CAGCTTGGGTGCTCGTCGACTCGCTGCGGCGGGTCGCTTGATCCTCCTCA
TTCCGATTGGGGAACTCGTGAACCGAGCTTGAATTTATCACGTCCTCTTC
CGATTCCACGCTGGATATCGAGGGATTTCTTTGTGCTTTGTATTTGATTA
ACTTAAACTTGCGCTCCTCCCGCATCCGCGTCAGACGCATCAGGAGCGAG
TAATGCTGCTCCACGCGATGCAGACATGATTTGCATATGGTTTTTGGCAA
TGGATCAGTCGGAGATATTGTAATTGGTAGGTAACCGTTGATTTTCTCAA
CAAGACACAAACGCTGGCCATGATCACTATAAATATGTATTACTGTGCGG
TGCATCTCTGAACACAGTCGGCATAGAAATCCCGATATGCACGCCTTTTC
TATGCTCCCCATGTCGACTGATAACT
BO12148.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31109-PA | 597 | CG31109-RA | 1..594 | 612..19 | 2970 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:52:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31109-RB | 978 | CG31109-RB | 145..748 | 622..19 | 2975 | 99.5 | Minus |
CG31109-RA | 870 | CG31109-RA | 145..748 | 622..19 | 2975 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:52:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25053599..25053869 | 19..289 | 1355 | 100 | Plus |
3R | 32079331 | 3R | 25054356..25054509 | 469..622 | 725 | 98.1 | Plus |
3R | 32079331 | 3R | 25054042..25054179 | 331..468 | 690 | 100 | Plus |
3R | 32079331 | 3R | 25053933..25053974 | 289..330 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:52:35 has no hits.
BO12148.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:29 Download gff for
BO12148.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31109-PA | 1..597 | 15..612 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:52 Download gff for
BO12148.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31109-PA | 1..597 | 15..612 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:35:01 Download gff for
BO12148.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31109-RA | 145..751 | 15..622 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:49:55 Download gff for
BO12148.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31109-RA | 145..751 | 15..622 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:49:55 Download gff for
BO12148.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25053596..25053868 | 15..288 | 99 | <- | Plus |
3R | 25053933..25053974 | 289..330 | 100 | <- | Plus |
3R | 25054042..25054179 | 331..468 | 100 | <- | Plus |
3R | 25054356..25054509 | 469..622 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:35:01 Download gff for
BO12148.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20879318..20879590 | 15..288 | 99 | <- | Plus |
arm_3R | 20879655..20879696 | 289..330 | 100 | <- | Plus |
arm_3R | 20879764..20879901 | 331..468 | 100 | <- | Plus |
arm_3R | 20880078..20880231 | 469..622 | 98 | | Plus |
BO12148.5prime Sequence
626 bp (625 high quality bases) assembled on 2006-04-20
> BO12148.5prime
GAAGTTATCAGTCGACATGGGGAGCATAGAAAAGGCGTGCATATCGGGAT
TTCTATGCCGACTGTGTTCAGAGATGCACCGCACAGTAATACATATTTAT
AGTGATCATGGCCAGCGTTTGTGTCTTGTTGAGAAAATCAACGGTTACCT
ACCAATTACAATATCTCCGACTGATCCATTGCCAAAAACCATATGCAAAT
CATGTCTGCATCGCGTGGAGCAGCATTACTCGCTCCTGATGCGTCTGACG
CGGATGCGGGAGGAGCGCAAGTTTAAGTTAATCAAATACAAAGCACAAAG
AAATCCCTCGATATCCAGCGTGGAATCGGAAGAGGACGTGATAAATTCAA
GCTCGGTTCACGAGTTCCCCAATCGGAATGAGGAGGATCAAGCGACCCGC
CGCAGCGAGTCGACGAGCACCCAAGCTGAAACTGGTCCACAGACCCAGGA
ATCCCAATCCCCCAAGTCAACAAAGACCGCAGTGTCCACACCAAACAGCA
GCGAAAGCCACGATGCCAGTGGTGCTGGGCCCAGCAATAGAGACCGAAAA
GAGACTGGCACAGGCAACTCGGAAACGGGTAGCACTACTCGGGAAGGAAC
CCATGCAGATGCAAGCTTTCTAGACC
BO12148.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31109-PA | 597 | CG31109-RA | 1..594 | 17..610 | 2970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:06:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31109-RB | 978 | CG31109-RB | 145..748 | 7..610 | 2975 | 99.5 | Plus |
CG31109-RA | 870 | CG31109-RA | 145..748 | 7..610 | 2975 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:06:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25053599..25053869 | 610..340 | 1355 | 100 | Minus |
3R | 32079331 | 3R | 25054356..25054509 | 160..7 | 725 | 98.1 | Minus |
3R | 32079331 | 3R | 25054042..25054179 | 298..161 | 690 | 100 | Minus |
3R | 32079331 | 3R | 25053933..25053974 | 340..299 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:06:16 has no hits.
BO12148.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:30 Download gff for
BO12148.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31109-PA | 1..597 | 17..614 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:54 Download gff for
BO12148.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31109-PA | 1..597 | 17..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:18:10 Download gff for
BO12148.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31109-RA | 145..751 | 7..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:00 Download gff for
BO12148.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31109-RA | 145..751 | 7..614 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:36:00 Download gff for
BO12148.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25053596..25053868 | 341..614 | 99 | <- | Minus |
3R | 25053933..25053974 | 299..340 | 100 | <- | Minus |
3R | 25054042..25054179 | 161..298 | 100 | <- | Minus |
3R | 25054356..25054509 | 7..160 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:18:10 Download gff for
BO12148.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20880078..20880231 | 7..160 | 98 | | Minus |
arm_3R | 20879764..20879901 | 161..298 | 100 | <- | Minus |
arm_3R | 20879318..20879590 | 341..614 | 99 | <- | Minus |
arm_3R | 20879655..20879696 | 299..340 | 100 | <- | Minus |
BO12148.complete Sequence
628 bp assembled on 2006-10-11
GenBank Submission: FJ632330
> BO12148.complete
GAAGTTATCAGTCGACATGGGGAGCATAGAAAAGGCGTGCATATCGGGAT
TTCTATGCCGACTGTGTTCAGAGATGCACCGCACAGTAATACATATTTAT
AGTGATCATGGCCAGCGTTTGTGTCTTGTTGAGAAAATCAACGGTTACCT
ACCAATTACAATATCTCCGACTGATCCATTGCCAAAAACCATATGCAAAT
CATGTCTGCATCGCGTGGAGCAGCATTACTCGCTCCTGATGCGTCTGACG
CGGATGCGGGAGGAGCGCAAGTTTAAGTTAATCAAATACAAAGCACAAAG
AAATCCCTCGATATCCAGCGTGGAATCGGAAGAGGACGTGATAAATTCAA
GCTCGGTTCACGAGTTCCCCAATCGGAATGAGGAGGATCAAGCGACCCGC
CGCAGCGAGTCGACGAGCACCCAAGCTGAAACTGGTCCACAGACCCAGGA
ATCCCAATCCCCCAAGTCAACAAAGACCGCAGTGTCCACACCAAACAGCA
GCGAAAGCCACGATGCCAGTGGTGCTGGGCCCAGCAATAGAGACCGAAAA
GAGACTGGCACAGGCAACTCGGAAACGGGTAGCACTACTCGGGAAGGAAC
CCATGCAGATGCAAGCTTTCTAGACCAT
BO12148.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:31:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31109-RB | 597 | CG31109-PB | 1..594 | 17..610 | 2970 | 100 | Plus |
CG31109-RA | 597 | CG31109-PA | 1..594 | 17..610 | 2970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:31:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31109-RB | 978 | CG31109-RB | 145..748 | 7..610 | 2975 | 99.5 | Plus |
CG31109-RA | 870 | CG31109-RA | 145..748 | 7..610 | 2975 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:31:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25053599..25053869 | 610..340 | 1355 | 100 | Minus |
3R | 32079331 | 3R | 25054356..25054509 | 160..7 | 725 | 98.1 | Minus |
3R | 32079331 | 3R | 25054042..25054179 | 298..161 | 690 | 100 | Minus |
3R | 32079331 | 3R | 25053933..25053974 | 340..299 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:31:21 has no hits.
BO12148.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:39 Download gff for
BO12148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31109-RA | 1..597 | 17..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:08 Download gff for
BO12148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31109-RA | 126..732 | 7..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:20 Download gff for
BO12148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31109-RA | 155..748 | 17..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:39 Download gff for
BO12148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31109-RA | 126..732 | 7..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:59 Download gff for
BO12148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31109-RA | 155..748 | 17..612 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:59 Download gff for
BO12148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25053597..25053868 | 341..612 | 99 | <- | Minus |
3R | 25053933..25053974 | 299..340 | 100 | <- | Minus |
3R | 25054042..25054179 | 161..298 | 100 | <- | Minus |
3R | 25054356..25054499 | 17..160 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:20 Download gff for
BO12148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20879319..20879590 | 341..612 | 99 | <- | Minus |
arm_3R | 20879655..20879696 | 299..340 | 100 | <- | Minus |
arm_3R | 20879764..20879901 | 161..298 | 100 | <- | Minus |
arm_3R | 20880078..20880221 | 17..160 | 100 | | Minus |
BO12148.pep Sequence
Translation from 16 to 628
> BO12148.pep
MGSIEKACISGFLCRLCSEMHRTVIHIYSDHGQRLCLVEKINGYLPITIS
PTDPLPKTICKSCLHRVEQHYSLLMRLTRMREERKFKLIKYKAQRNPSIS
SVESEEDVINSSSVHEFPNRNEEDQATRRSESTSTQAETGPQTQESQSPK
STKTAVSTPNSSESHDASGAGPSNRDRKETGTGNSETGSTTREGTHADAS
FLDH
BO12148.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31109-PB | 198 | CG31109-PB | 1..198 | 1..198 | 1030 | 100 | Plus |
CG31109-PA | 198 | CG31109-PA | 1..198 | 1..198 | 1030 | 100 | Plus |