Clone BO12148 Report

Search the DGRC for BO12148

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG31109-RA
Protein status:BO12148.pep: validated full length
Sequenced Size:628

Clone Sequence Records

BO12148.3prime Sequence

626 bp (625 high quality bases) assembled on 2006-04-20

> BO12148.3prime
ATGGTCTAGAAAGCTTGCATCTGCATGGGTTCCTTCCCGAGTAGTGCTAC
CCGTTTCCGAGTTGCCTGTGCCAGTCTCTTTTCGGTCTCTATTGCTGGGC
CCAGCACCACTGGCATCGTGGCTTTCGCTGCTGTTTGGTGTGGACACTGC
GGTCTTTGTTGACTTGGGGGATTGGGATTCCTGGGTCTGTGGACCAGTTT
CAGCTTGGGTGCTCGTCGACTCGCTGCGGCGGGTCGCTTGATCCTCCTCA
TTCCGATTGGGGAACTCGTGAACCGAGCTTGAATTTATCACGTCCTCTTC
CGATTCCACGCTGGATATCGAGGGATTTCTTTGTGCTTTGTATTTGATTA
ACTTAAACTTGCGCTCCTCCCGCATCCGCGTCAGACGCATCAGGAGCGAG
TAATGCTGCTCCACGCGATGCAGACATGATTTGCATATGGTTTTTGGCAA
TGGATCAGTCGGAGATATTGTAATTGGTAGGTAACCGTTGATTTTCTCAA
CAAGACACAAACGCTGGCCATGATCACTATAAATATGTATTACTGTGCGG
TGCATCTCTGAACACAGTCGGCATAGAAATCCCGATATGCACGCCTTTTC
TATGCTCCCCATGTCGACTGATAACT

BO12148.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG31109-PA 597 CG31109-RA 1..594 612..19 2970 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:52:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG31109-RB 978 CG31109-RB 145..748 622..19 2975 99.5 Minus
CG31109-RA 870 CG31109-RA 145..748 622..19 2975 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25053599..25053869 19..289 1355 100 Plus
3R 32079331 3R 25054356..25054509 469..622 725 98.1 Plus
3R 32079331 3R 25054042..25054179 331..468 690 100 Plus
3R 32079331 3R 25053933..25053974 289..330 210 100 Plus
Blast to na_te.dros performed on 2015-02-03 07:52:35 has no hits.

BO12148.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:29 Download gff for BO12148.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31109-PA 1..597 15..612 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:52 Download gff for BO12148.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31109-PA 1..597 15..612 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:35:01 Download gff for BO12148.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31109-RA 145..751 15..622 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:49:55 Download gff for BO12148.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31109-RA 145..751 15..622 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:49:55 Download gff for BO12148.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25053596..25053868 15..288 99 <- Plus
3R 25053933..25053974 289..330 100 <- Plus
3R 25054042..25054179 331..468 100 <- Plus
3R 25054356..25054509 469..622 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:35:01 Download gff for BO12148.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20879318..20879590 15..288 99 <- Plus
arm_3R 20879655..20879696 289..330 100 <- Plus
arm_3R 20879764..20879901 331..468 100 <- Plus
arm_3R 20880078..20880231 469..622 98   Plus

BO12148.5prime Sequence

626 bp (625 high quality bases) assembled on 2006-04-20

> BO12148.5prime
GAAGTTATCAGTCGACATGGGGAGCATAGAAAAGGCGTGCATATCGGGAT
TTCTATGCCGACTGTGTTCAGAGATGCACCGCACAGTAATACATATTTAT
AGTGATCATGGCCAGCGTTTGTGTCTTGTTGAGAAAATCAACGGTTACCT
ACCAATTACAATATCTCCGACTGATCCATTGCCAAAAACCATATGCAAAT
CATGTCTGCATCGCGTGGAGCAGCATTACTCGCTCCTGATGCGTCTGACG
CGGATGCGGGAGGAGCGCAAGTTTAAGTTAATCAAATACAAAGCACAAAG
AAATCCCTCGATATCCAGCGTGGAATCGGAAGAGGACGTGATAAATTCAA
GCTCGGTTCACGAGTTCCCCAATCGGAATGAGGAGGATCAAGCGACCCGC
CGCAGCGAGTCGACGAGCACCCAAGCTGAAACTGGTCCACAGACCCAGGA
ATCCCAATCCCCCAAGTCAACAAAGACCGCAGTGTCCACACCAAACAGCA
GCGAAAGCCACGATGCCAGTGGTGCTGGGCCCAGCAATAGAGACCGAAAA
GAGACTGGCACAGGCAACTCGGAAACGGGTAGCACTACTCGGGAAGGAAC
CCATGCAGATGCAAGCTTTCTAGACC

BO12148.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG31109-PA 597 CG31109-RA 1..594 17..610 2970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG31109-RB 978 CG31109-RB 145..748 7..610 2975 99.5 Plus
CG31109-RA 870 CG31109-RA 145..748 7..610 2975 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25053599..25053869 610..340 1355 100 Minus
3R 32079331 3R 25054356..25054509 160..7 725 98.1 Minus
3R 32079331 3R 25054042..25054179 298..161 690 100 Minus
3R 32079331 3R 25053933..25053974 340..299 210 100 Minus
Blast to na_te.dros performed on 2015-02-11 13:06:16 has no hits.

BO12148.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:30 Download gff for BO12148.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31109-PA 1..597 17..614 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:54 Download gff for BO12148.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31109-PA 1..597 17..614 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:18:10 Download gff for BO12148.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31109-RA 145..751 7..614 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:00 Download gff for BO12148.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31109-RA 145..751 7..614 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:36:00 Download gff for BO12148.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25053596..25053868 341..614 99 <- Minus
3R 25053933..25053974 299..340 100 <- Minus
3R 25054042..25054179 161..298 100 <- Minus
3R 25054356..25054509 7..160 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:18:10 Download gff for BO12148.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20880078..20880231 7..160 98   Minus
arm_3R 20879764..20879901 161..298 100 <- Minus
arm_3R 20879318..20879590 341..614 99 <- Minus
arm_3R 20879655..20879696 299..340 100 <- Minus

BO12148.complete Sequence

628 bp assembled on 2006-10-11

GenBank Submission: FJ632330

> BO12148.complete
GAAGTTATCAGTCGACATGGGGAGCATAGAAAAGGCGTGCATATCGGGAT
TTCTATGCCGACTGTGTTCAGAGATGCACCGCACAGTAATACATATTTAT
AGTGATCATGGCCAGCGTTTGTGTCTTGTTGAGAAAATCAACGGTTACCT
ACCAATTACAATATCTCCGACTGATCCATTGCCAAAAACCATATGCAAAT
CATGTCTGCATCGCGTGGAGCAGCATTACTCGCTCCTGATGCGTCTGACG
CGGATGCGGGAGGAGCGCAAGTTTAAGTTAATCAAATACAAAGCACAAAG
AAATCCCTCGATATCCAGCGTGGAATCGGAAGAGGACGTGATAAATTCAA
GCTCGGTTCACGAGTTCCCCAATCGGAATGAGGAGGATCAAGCGACCCGC
CGCAGCGAGTCGACGAGCACCCAAGCTGAAACTGGTCCACAGACCCAGGA
ATCCCAATCCCCCAAGTCAACAAAGACCGCAGTGTCCACACCAAACAGCA
GCGAAAGCCACGATGCCAGTGGTGCTGGGCCCAGCAATAGAGACCGAAAA
GAGACTGGCACAGGCAACTCGGAAACGGGTAGCACTACTCGGGAAGGAAC
CCATGCAGATGCAAGCTTTCTAGACCAT

BO12148.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG31109-RB 597 CG31109-PB 1..594 17..610 2970 100 Plus
CG31109-RA 597 CG31109-PA 1..594 17..610 2970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31109-RB 978 CG31109-RB 145..748 7..610 2975 99.5 Plus
CG31109-RA 870 CG31109-RA 145..748 7..610 2975 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25053599..25053869 610..340 1355 100 Minus
3R 32079331 3R 25054356..25054509 160..7 725 98.1 Minus
3R 32079331 3R 25054042..25054179 298..161 690 100 Minus
3R 32079331 3R 25053933..25053974 340..299 210 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:31:21 has no hits.

BO12148.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:39 Download gff for BO12148.complete
Subject Subject Range Query Range Percent Splice Strand
CG31109-RA 1..597 17..614 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:08 Download gff for BO12148.complete
Subject Subject Range Query Range Percent Splice Strand
CG31109-RA 126..732 7..614 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:20 Download gff for BO12148.complete
Subject Subject Range Query Range Percent Splice Strand
CG31109-RA 155..748 17..612 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:39 Download gff for BO12148.complete
Subject Subject Range Query Range Percent Splice Strand
CG31109-RA 126..732 7..614 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:59 Download gff for BO12148.complete
Subject Subject Range Query Range Percent Splice Strand
CG31109-RA 155..748 17..612 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:59 Download gff for BO12148.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25053597..25053868 341..612 99 <- Minus
3R 25053933..25053974 299..340 100 <- Minus
3R 25054042..25054179 161..298 100 <- Minus
3R 25054356..25054499 17..160 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:20 Download gff for BO12148.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20879319..20879590 341..612 99 <- Minus
arm_3R 20879655..20879696 299..340 100 <- Minus
arm_3R 20879764..20879901 161..298 100 <- Minus
arm_3R 20880078..20880221 17..160 100   Minus

BO12148.pep Sequence

Translation from 16 to 628

> BO12148.pep
MGSIEKACISGFLCRLCSEMHRTVIHIYSDHGQRLCLVEKINGYLPITIS
PTDPLPKTICKSCLHRVEQHYSLLMRLTRMREERKFKLIKYKAQRNPSIS
SVESEEDVINSSSVHEFPNRNEEDQATRRSESTSTQAETGPQTQESQSPK
STKTAVSTPNSSESHDASGAGPSNRDRKETGTGNSETGSTTREGTHADAS
FLDH

BO12148.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG31109-PB 198 CG31109-PB 1..198 1..198 1030 100 Plus
CG31109-PA 198 CG31109-PA 1..198 1..198 1030 100 Plus