Clone BO12149 Report

Search the DGRC for BO12149

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG9372-RA
Protein status:BO12149.pep: validated full length
Sequenced Size:1258

Clone Sequence Records

BO12149.3prime Sequence

893 bp (884 high quality bases) assembled on 2006-04-20

> BO12149.3prime
ATGGTCTAGAAAGCTTGCGACATCTGCATTAGCCAAAATCCAGTCCAGGT
AGCGATCCACGCGAGTGTAGATACCCGGGCGACCCCGCTGTCCGCAGCCG
ACGCCCCAGGACACGATGCCGATCGTGACCCAGCGTTGGTTGGGAAGTTG
TACCAACAGAGGACCTCCGCTATCGCCTTGACAGGAGTCCTGACCTCCTT
CCGGAAATCCAGCGCACATGGCAGTGTCCGGAACGTGCTGTACAAATGAC
GACCTGCAATCGGACTGCTTCCAAACCGGCAGGTTAACCTCCATGAGGAT
GTTAGAATGAGGACCGCCAAACTTTTGGGTGCCCCAACCGGTGACAATGG
CGTTTCTATCCGACCAATCTTCGTTCACGGGCGGCATGCAAACTGGCCAG
ATGTAGGTGTTGAATATAGTCGCCCTGTCGATTCTGACAATTGCAATATC
ATTGTCGTAGTTCTGTGGATTATAATCGATATGGAGCACCATGTTGGCAA
TCCGGAAATCCCTCGCCCTCGTCTCATTCAGCATATGCGTGTTGTACTCG
CCCAGACGCACGAAGATGTCCTCCTTGTTCTTCTTGTAGATGCAGTGAGC
GGCAGTTAGGACATGACGGTCGGTGATCAGGACACCACCGCACCAAACGA
AGGGCAGACCCTCCTGCAGCAGGGCCGCCATCCAAGGCCACTCGTCTGGC
TCGGCTGGCCGTCCACCGGTGAGGCGGGGAAACTGCCTGGACGTGATCCC
ACAACCTCGCTGCTCCGGCTTATTAACGATGCGCGGCTCATCACCGTCCG
CACTGGTCACGACTTGCGGACTAAATCGGTTGCTCGTCGACTGGTCAGTG
CAGCAAATGCCTATGGAGCTTTTCTCAATGATGCAAAGCTGGG

BO12149.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9372-PA 1227 CG9372-RA 350..1224 893..19 4375 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG9372-RA 1693 CG9372-RA 723..1597 893..19 4375 100 Minus
Lon-RC 3761 CG8798-RC 3346..3617 19..290 1360 100 Plus
Lon-RA 3707 CG8798-RA 3292..3563 19..290 1360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 05:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19607244..19607827 870..287 2920 100 Minus
3L 28110227 3L 19608001..19608272 290..19 1360 100 Minus
Blast to na_te.dros performed on 2015-02-01 05:02:09 has no hits.

BO12149.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:31 Download gff for BO12149.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9372-PA 350..1227 18..893 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:55 Download gff for BO12149.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9372-PA 350..1227 18..893 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:11:13 Download gff for BO12149.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9372-RA 723..1597 19..893 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:51:48 Download gff for BO12149.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9372-RA 723..1597 19..893 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:51:48 Download gff for BO12149.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19607153..19607177 869..893 100 -> Minus
3L 19607246..19607825 289..868 100 -> Minus
3L 19608003..19608272 19..288 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:11:13 Download gff for BO12149.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19600253..19600277 869..893 100 -> Minus
arm_3L 19600346..19600925 289..868 100 -> Minus
arm_3L 19601103..19601372 19..288 100   Minus

BO12149.5prime Sequence

844 bp (843 high quality bases) assembled on 2006-04-20

> BO12149.5prime
GAAGTTATCAGTCGACATGAAGGCATTTCTTTGGGCATTGGTGATTTTAC
TGGGCTATATCCCGCAGAGTACAATCGCCAAGACTGTATCCACTGATTTT
TTAGATCTTCTCGACTTCAGCGATAATGATGAGTTTCAATGGGGGGAGTC
GGAGAATCAGGTATACGAAAATCGCACTGGGGAAAACCGCGTCGTAAGTT
TCCTGTCCCAACATCGCCTAAACAAGCGACAGGCTCCCACCTCGCAATTG
CTGGAGAACAAGGATTATGGAGCATGTAGCACTCCATTGGGTGAATCCGG
CCGATGTCGCCACATTATCTACTGTCGCATGCCAGAACTTAAGAATGATG
TCTGGCGTCTGGTCTCCCAGCTTTGCATCATTGAGAAAAGCTCCATAGGC
ATTTGCTGCACTGACCAGTCGACGAGCAACCGATTTAGTCCGCAAGTCGT
GACCAGTGCGGACGGTGATGAGCCGCGCATCGTTAATAAGCCGGAGCAGC
GAGGTTGTGGGATCACGTCCAGGCAGTTTCCCCGCCTCACCGGTGGACGG
CCAGCCGAGCCAGACGAGTGGCCTTGGATGGCGGCCCTGCTGCAGGAGGG
TCTGCCCTTCGTTTGGTGCGGTGGTGTCCTGATCACCGACCGTCATGTCC
TAACTGCCGCTCACTGCATCTACAAGAAGAACAAGGAGGACATCTTCGTG
CGTCTGGGCGAGTACAACACGCATATGCTGAATGAGACGAGGGCGAGGGA
TTTCCGGATTGCCAACATGGTGCTCCATATCGATTATAATCCACAGAACT
ACGACAATGATATTGCAATTGTCAGAATCGACAGGGCGACTATA

BO12149.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9372-PA 1227 CG9372-RA 1..828 17..844 4140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG9372-RA 1693 CG9372-RA 374..1201 17..844 4140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:44:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19607244..19607699 389..844 2280 100 Plus
3L 28110227 3L 19606831..19606982 103..254 760 100 Plus
3L 28110227 3L 19607040..19607177 253..390 690 100 Plus
3L 28110227 3L 19606581..19606668 17..104 440 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:44:30 has no hits.

BO12149.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:32 Download gff for BO12149.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9372-PA 1..827 17..843 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:56 Download gff for BO12149.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9372-PA 1..827 17..843 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:44:32 Download gff for BO12149.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9372-RA 364..1200 7..843 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:09:16 Download gff for BO12149.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9372-RA 364..1200 7..843 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:09:16 Download gff for BO12149.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19607041..19607177 254..390 100 -> Plus
3L 19606571..19606668 7..104 95 -> Plus
3L 19606833..19606981 105..253 100 -> Plus
3L 19607246..19607698 391..843 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:44:32 Download gff for BO12149.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19599671..19599768 7..104 95 -> Plus
arm_3L 19599933..19600081 105..253 100 -> Plus
arm_3L 19600141..19600277 254..390 100 -> Plus
arm_3L 19600346..19600798 391..843 100   Plus

BO12149.complete Sequence

1258 bp assembled on 2006-10-11

GenBank Submission: FJ632331

> BO12149.complete
GAAGTTATCAGTCGACATGAAGGCATTTCTTTGGGCATTGGTGATTTTAC
TGGGCTATATCCCGCAGAGTACAATCGCCAAGACTGTATCCACTGATTTT
TTAGATCTTCTCGACTTCAGCGATAATGATGAGTTTCAATGGGGGGAGTC
GGAGAATCAGGTATACGAAAATCGCACTGGGGAAAACCGCGTCGTAAGTT
TCCTGTCCCAACATCGCCTAAACAAGCGACAGGCTCCCACCTCGCAATTG
CTGGAGAACAAGGATTATGGAGCATGTAGCACTCCATTGGGTGAATCCGG
CCGATGTCGCCACATTATCTACTGTCGCATGCCAGAACTTAAGAATGATG
TCTGGCGTCTGGTCTCCCAGCTTTGCATCATTGAGAAAAGCTCCATAGGC
ATTTGCTGCACTGACCAGTCGACGAGCAACCGATTTAGTCCGCAAGTCGT
GACCAGTGCGGACGGTGATGAGCCGCGCATCGTTAATAAGCCGGAGCAGC
GAGGTTGTGGGATCACGTCCAGGCAGTTTCCCCGCCTCACCGGTGGACGG
CCAGCCGAGCCAGACGAGTGGCCTTGGATGGCGGCCCTGCTGCAGGAGGG
TCTGCCCTTCGTTTGGTGCGGTGGTGTCCTGATCACCGACCGTCATGTCC
TAACTGCCGCTCACTGCATCTACAAGAAGAACAAGGAGGACATCTTCGTG
CGTCTGGGCGAGTACAACACGCATATGCTGAATGAGACGAGGGCGAGGGA
TTTCCGGATTGCCAACATGGTGCTCCATATCGATTATAATCCACAGAACT
ACGACAATGATATTGCAATTGTCAGAATCGACAGGGCGACTATATTCAAC
ACCTACATCTGGCCAGTTTGCATGCCGCCCGTGAACGAAGATTGGTCGGA
TAGAAACGCCATTGTCACCGGTTGGGGCACCCAAAAGTTTGGCGGTCCTC
ATTCTAACATCCTCATGGAGGTTAACCTGCCGGTTTGGAAGCAGTCCGAT
TGCAGGTCGTCATTTGTACAGCACGTTCCGGACACTGCCATGTGCGCTGG
ATTTCCGGAAGGAGGTCAGGACTCCTGTCAAGGCGATAGCGGAGGTCCTC
TGTTGGTACAACTTCCCAACCAACGCTGGGTCACGATCGGCATCGTGTCC
TGGGGCGTCGGCTGCGGACAGCGGGGTCGCCCGGGTATCTACACTCGCGT
GGATCGCTACCTGGACTGGATTTTGGCTAATGCAGATGTCGCAAGCTTTC
TAGACCAT

BO12149.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG9372-RA 1227 CG9372-PA 1..1224 17..1240 6120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG9372-RA 1693 CG9372-RA 374..1597 17..1240 6120 100 Plus
Lon-RC 3761 CG8798-RC 3346..3617 1240..969 1360 100 Minus
Lon-RA 3707 CG8798-RA 3292..3563 1240..969 1360 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19607244..19607827 389..972 2920 100 Plus
3L 28110227 3L 19608001..19608272 969..1240 1360 100 Plus
3L 28110227 3L 19606831..19606982 103..254 760 100 Plus
3L 28110227 3L 19607040..19607177 253..390 690 100 Plus
3L 28110227 3L 19606581..19606668 17..104 440 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:22:56 has no hits.

BO12149.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:25 Download gff for BO12149.complete
Subject Subject Range Query Range Percent Splice Strand
CG9372-RA 1..1227 17..1241 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:10 Download gff for BO12149.complete
Subject Subject Range Query Range Percent Splice Strand
CG9372-RA 362..1595 7..1240 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:52 Download gff for BO12149.complete
Subject Subject Range Query Range Percent Splice Strand
CG9372-RA 374..1597 17..1242 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:25 Download gff for BO12149.complete
Subject Subject Range Query Range Percent Splice Strand
CG9372-RA 362..1595 7..1240 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:15 Download gff for BO12149.complete
Subject Subject Range Query Range Percent Splice Strand
CG9372-RA 374..1597 17..1242 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:15 Download gff for BO12149.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19606833..19606981 105..253 100 -> Plus
3L 19607041..19607177 254..390 100 -> Plus
3L 19606581..19606668 17..104 100 -> Plus
3L 19607246..19607825 391..970 100 -> Plus
3L 19608003..19608272 971..1242 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:52 Download gff for BO12149.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19599681..19599768 17..104 100 -> Plus
arm_3L 19599933..19600081 105..253 100 -> Plus
arm_3L 19600141..19600277 254..390 100 -> Plus
arm_3L 19600346..19600925 391..970 100 -> Plus
arm_3L 19601103..19601372 971..1242 99   Plus

BO12149.pep Sequence

Translation from 16 to 1258

> BO12149.pep
MKAFLWALVILLGYIPQSTIAKTVSTDFLDLLDFSDNDEFQWGESENQVY
ENRTGENRVVSFLSQHRLNKRQAPTSQLLENKDYGACSTPLGESGRCRHI
IYCRMPELKNDVWRLVSQLCIIEKSSIGICCTDQSTSNRFSPQVVTSADG
DEPRIVNKPEQRGCGITSRQFPRLTGGRPAEPDEWPWMAALLQEGLPFVW
CGGVLITDRHVLTAAHCIYKKNKEDIFVRLGEYNTHMLNETRARDFRIAN
MVLHIDYNPQNYDNDIAIVRIDRATIFNTYIWPVCMPPVNEDWSDRNAIV
TGWGTQKFGGPHSNILMEVNLPVWKQSDCRSSFVQHVPDTAMCAGFPEGG
QDSCQGDSGGPLLVQLPNQRWVTIGIVSWGVGCGQRGRPGIYTRVDRYLD
WILANADVASFLDH

BO12149.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9372-PA 408 CG9372-PA 1..408 1..408 2230 100 Plus
CG4386-PA 372 CG4386-PA 118..354 164..402 544 44.8 Plus
CG11836-PI 281 CG11836-PI 36..275 164..407 477 37 Plus
CG18735-PA 364 CG18735-PA 82..314 173..405 475 40.7 Plus
CG1299-PB 442 CG1299-PB 95..435 87..403 472 34.6 Plus