Clone Sequence Records
BO12149.3prime Sequence
893 bp (884 high quality bases) assembled on 2006-04-20
> BO12149.3prime
ATGGTCTAGAAAGCTTGCGACATCTGCATTAGCCAAAATCCAGTCCAGGT
AGCGATCCACGCGAGTGTAGATACCCGGGCGACCCCGCTGTCCGCAGCCG
ACGCCCCAGGACACGATGCCGATCGTGACCCAGCGTTGGTTGGGAAGTTG
TACCAACAGAGGACCTCCGCTATCGCCTTGACAGGAGTCCTGACCTCCTT
CCGGAAATCCAGCGCACATGGCAGTGTCCGGAACGTGCTGTACAAATGAC
GACCTGCAATCGGACTGCTTCCAAACCGGCAGGTTAACCTCCATGAGGAT
GTTAGAATGAGGACCGCCAAACTTTTGGGTGCCCCAACCGGTGACAATGG
CGTTTCTATCCGACCAATCTTCGTTCACGGGCGGCATGCAAACTGGCCAG
ATGTAGGTGTTGAATATAGTCGCCCTGTCGATTCTGACAATTGCAATATC
ATTGTCGTAGTTCTGTGGATTATAATCGATATGGAGCACCATGTTGGCAA
TCCGGAAATCCCTCGCCCTCGTCTCATTCAGCATATGCGTGTTGTACTCG
CCCAGACGCACGAAGATGTCCTCCTTGTTCTTCTTGTAGATGCAGTGAGC
GGCAGTTAGGACATGACGGTCGGTGATCAGGACACCACCGCACCAAACGA
AGGGCAGACCCTCCTGCAGCAGGGCCGCCATCCAAGGCCACTCGTCTGGC
TCGGCTGGCCGTCCACCGGTGAGGCGGGGAAACTGCCTGGACGTGATCCC
ACAACCTCGCTGCTCCGGCTTATTAACGATGCGCGGCTCATCACCGTCCG
CACTGGTCACGACTTGCGGACTAAATCGGTTGCTCGTCGACTGGTCAGTG
CAGCAAATGCCTATGGAGCTTTTCTCAATGATGCAAAGCTGGG
BO12149.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9372-PA | 1227 | CG9372-RA | 350..1224 | 893..19 | 4375 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:02:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9372-RA | 1693 | CG9372-RA | 723..1597 | 893..19 | 4375 | 100 | Minus |
Lon-RC | 3761 | CG8798-RC | 3346..3617 | 19..290 | 1360 | 100 | Plus |
Lon-RA | 3707 | CG8798-RA | 3292..3563 | 19..290 | 1360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 05:02:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19607244..19607827 | 870..287 | 2920 | 100 | Minus |
3L | 28110227 | 3L | 19608001..19608272 | 290..19 | 1360 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 05:02:09 has no hits.
BO12149.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:31 Download gff for
BO12149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9372-PA | 350..1227 | 18..893 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:55 Download gff for
BO12149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9372-PA | 350..1227 | 18..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:11:13 Download gff for
BO12149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9372-RA | 723..1597 | 19..893 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:51:48 Download gff for
BO12149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9372-RA | 723..1597 | 19..893 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:51:48 Download gff for
BO12149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19607153..19607177 | 869..893 | 100 | -> | Minus |
3L | 19607246..19607825 | 289..868 | 100 | -> | Minus |
3L | 19608003..19608272 | 19..288 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:11:13 Download gff for
BO12149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19600253..19600277 | 869..893 | 100 | -> | Minus |
arm_3L | 19600346..19600925 | 289..868 | 100 | -> | Minus |
arm_3L | 19601103..19601372 | 19..288 | 100 | | Minus |
BO12149.5prime Sequence
844 bp (843 high quality bases) assembled on 2006-04-20
> BO12149.5prime
GAAGTTATCAGTCGACATGAAGGCATTTCTTTGGGCATTGGTGATTTTAC
TGGGCTATATCCCGCAGAGTACAATCGCCAAGACTGTATCCACTGATTTT
TTAGATCTTCTCGACTTCAGCGATAATGATGAGTTTCAATGGGGGGAGTC
GGAGAATCAGGTATACGAAAATCGCACTGGGGAAAACCGCGTCGTAAGTT
TCCTGTCCCAACATCGCCTAAACAAGCGACAGGCTCCCACCTCGCAATTG
CTGGAGAACAAGGATTATGGAGCATGTAGCACTCCATTGGGTGAATCCGG
CCGATGTCGCCACATTATCTACTGTCGCATGCCAGAACTTAAGAATGATG
TCTGGCGTCTGGTCTCCCAGCTTTGCATCATTGAGAAAAGCTCCATAGGC
ATTTGCTGCACTGACCAGTCGACGAGCAACCGATTTAGTCCGCAAGTCGT
GACCAGTGCGGACGGTGATGAGCCGCGCATCGTTAATAAGCCGGAGCAGC
GAGGTTGTGGGATCACGTCCAGGCAGTTTCCCCGCCTCACCGGTGGACGG
CCAGCCGAGCCAGACGAGTGGCCTTGGATGGCGGCCCTGCTGCAGGAGGG
TCTGCCCTTCGTTTGGTGCGGTGGTGTCCTGATCACCGACCGTCATGTCC
TAACTGCCGCTCACTGCATCTACAAGAAGAACAAGGAGGACATCTTCGTG
CGTCTGGGCGAGTACAACACGCATATGCTGAATGAGACGAGGGCGAGGGA
TTTCCGGATTGCCAACATGGTGCTCCATATCGATTATAATCCACAGAACT
ACGACAATGATATTGCAATTGTCAGAATCGACAGGGCGACTATA
BO12149.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9372-PA | 1227 | CG9372-RA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:44:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9372-RA | 1693 | CG9372-RA | 374..1201 | 17..844 | 4140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:44:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19607244..19607699 | 389..844 | 2280 | 100 | Plus |
3L | 28110227 | 3L | 19606831..19606982 | 103..254 | 760 | 100 | Plus |
3L | 28110227 | 3L | 19607040..19607177 | 253..390 | 690 | 100 | Plus |
3L | 28110227 | 3L | 19606581..19606668 | 17..104 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:44:30 has no hits.
BO12149.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:32 Download gff for
BO12149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9372-PA | 1..827 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:56 Download gff for
BO12149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9372-PA | 1..827 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:44:32 Download gff for
BO12149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9372-RA | 364..1200 | 7..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:09:16 Download gff for
BO12149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9372-RA | 364..1200 | 7..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:09:16 Download gff for
BO12149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19607041..19607177 | 254..390 | 100 | -> | Plus |
3L | 19606571..19606668 | 7..104 | 95 | -> | Plus |
3L | 19606833..19606981 | 105..253 | 100 | -> | Plus |
3L | 19607246..19607698 | 391..843 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:44:32 Download gff for
BO12149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19599671..19599768 | 7..104 | 95 | -> | Plus |
arm_3L | 19599933..19600081 | 105..253 | 100 | -> | Plus |
arm_3L | 19600141..19600277 | 254..390 | 100 | -> | Plus |
arm_3L | 19600346..19600798 | 391..843 | 100 | | Plus |
BO12149.complete Sequence
1258 bp assembled on 2006-10-11
GenBank Submission: FJ632331
> BO12149.complete
GAAGTTATCAGTCGACATGAAGGCATTTCTTTGGGCATTGGTGATTTTAC
TGGGCTATATCCCGCAGAGTACAATCGCCAAGACTGTATCCACTGATTTT
TTAGATCTTCTCGACTTCAGCGATAATGATGAGTTTCAATGGGGGGAGTC
GGAGAATCAGGTATACGAAAATCGCACTGGGGAAAACCGCGTCGTAAGTT
TCCTGTCCCAACATCGCCTAAACAAGCGACAGGCTCCCACCTCGCAATTG
CTGGAGAACAAGGATTATGGAGCATGTAGCACTCCATTGGGTGAATCCGG
CCGATGTCGCCACATTATCTACTGTCGCATGCCAGAACTTAAGAATGATG
TCTGGCGTCTGGTCTCCCAGCTTTGCATCATTGAGAAAAGCTCCATAGGC
ATTTGCTGCACTGACCAGTCGACGAGCAACCGATTTAGTCCGCAAGTCGT
GACCAGTGCGGACGGTGATGAGCCGCGCATCGTTAATAAGCCGGAGCAGC
GAGGTTGTGGGATCACGTCCAGGCAGTTTCCCCGCCTCACCGGTGGACGG
CCAGCCGAGCCAGACGAGTGGCCTTGGATGGCGGCCCTGCTGCAGGAGGG
TCTGCCCTTCGTTTGGTGCGGTGGTGTCCTGATCACCGACCGTCATGTCC
TAACTGCCGCTCACTGCATCTACAAGAAGAACAAGGAGGACATCTTCGTG
CGTCTGGGCGAGTACAACACGCATATGCTGAATGAGACGAGGGCGAGGGA
TTTCCGGATTGCCAACATGGTGCTCCATATCGATTATAATCCACAGAACT
ACGACAATGATATTGCAATTGTCAGAATCGACAGGGCGACTATATTCAAC
ACCTACATCTGGCCAGTTTGCATGCCGCCCGTGAACGAAGATTGGTCGGA
TAGAAACGCCATTGTCACCGGTTGGGGCACCCAAAAGTTTGGCGGTCCTC
ATTCTAACATCCTCATGGAGGTTAACCTGCCGGTTTGGAAGCAGTCCGAT
TGCAGGTCGTCATTTGTACAGCACGTTCCGGACACTGCCATGTGCGCTGG
ATTTCCGGAAGGAGGTCAGGACTCCTGTCAAGGCGATAGCGGAGGTCCTC
TGTTGGTACAACTTCCCAACCAACGCTGGGTCACGATCGGCATCGTGTCC
TGGGGCGTCGGCTGCGGACAGCGGGGTCGCCCGGGTATCTACACTCGCGT
GGATCGCTACCTGGACTGGATTTTGGCTAATGCAGATGTCGCAAGCTTTC
TAGACCAT
BO12149.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:22:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9372-RA | 1227 | CG9372-PA | 1..1224 | 17..1240 | 6120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:22:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9372-RA | 1693 | CG9372-RA | 374..1597 | 17..1240 | 6120 | 100 | Plus |
Lon-RC | 3761 | CG8798-RC | 3346..3617 | 1240..969 | 1360 | 100 | Minus |
Lon-RA | 3707 | CG8798-RA | 3292..3563 | 1240..969 | 1360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:22:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19607244..19607827 | 389..972 | 2920 | 100 | Plus |
3L | 28110227 | 3L | 19608001..19608272 | 969..1240 | 1360 | 100 | Plus |
3L | 28110227 | 3L | 19606831..19606982 | 103..254 | 760 | 100 | Plus |
3L | 28110227 | 3L | 19607040..19607177 | 253..390 | 690 | 100 | Plus |
3L | 28110227 | 3L | 19606581..19606668 | 17..104 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:22:56 has no hits.
BO12149.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:25 Download gff for
BO12149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9372-RA | 1..1227 | 17..1241 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:10 Download gff for
BO12149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9372-RA | 362..1595 | 7..1240 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:52 Download gff for
BO12149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9372-RA | 374..1597 | 17..1242 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:25 Download gff for
BO12149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9372-RA | 362..1595 | 7..1240 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:15 Download gff for
BO12149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9372-RA | 374..1597 | 17..1242 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:15 Download gff for
BO12149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19606833..19606981 | 105..253 | 100 | -> | Plus |
3L | 19607041..19607177 | 254..390 | 100 | -> | Plus |
3L | 19606581..19606668 | 17..104 | 100 | -> | Plus |
3L | 19607246..19607825 | 391..970 | 100 | -> | Plus |
3L | 19608003..19608272 | 971..1242 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:52 Download gff for
BO12149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19599681..19599768 | 17..104 | 100 | -> | Plus |
arm_3L | 19599933..19600081 | 105..253 | 100 | -> | Plus |
arm_3L | 19600141..19600277 | 254..390 | 100 | -> | Plus |
arm_3L | 19600346..19600925 | 391..970 | 100 | -> | Plus |
arm_3L | 19601103..19601372 | 971..1242 | 99 | | Plus |
BO12149.pep Sequence
Translation from 16 to 1258
> BO12149.pep
MKAFLWALVILLGYIPQSTIAKTVSTDFLDLLDFSDNDEFQWGESENQVY
ENRTGENRVVSFLSQHRLNKRQAPTSQLLENKDYGACSTPLGESGRCRHI
IYCRMPELKNDVWRLVSQLCIIEKSSIGICCTDQSTSNRFSPQVVTSADG
DEPRIVNKPEQRGCGITSRQFPRLTGGRPAEPDEWPWMAALLQEGLPFVW
CGGVLITDRHVLTAAHCIYKKNKEDIFVRLGEYNTHMLNETRARDFRIAN
MVLHIDYNPQNYDNDIAIVRIDRATIFNTYIWPVCMPPVNEDWSDRNAIV
TGWGTQKFGGPHSNILMEVNLPVWKQSDCRSSFVQHVPDTAMCAGFPEGG
QDSCQGDSGGPLLVQLPNQRWVTIGIVSWGVGCGQRGRPGIYTRVDRYLD
WILANADVASFLDH
BO12149.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9372-PA | 408 | CG9372-PA | 1..408 | 1..408 | 2230 | 100 | Plus |
CG4386-PA | 372 | CG4386-PA | 118..354 | 164..402 | 544 | 44.8 | Plus |
CG11836-PI | 281 | CG11836-PI | 36..275 | 164..407 | 477 | 37 | Plus |
CG18735-PA | 364 | CG18735-PA | 82..314 | 173..405 | 475 | 40.7 | Plus |
CG1299-PB | 442 | CG1299-PB | 95..435 | 87..403 | 472 | 34.6 | Plus |