Clone Sequence Records
BO12150.3prime Sequence
894 bp (784 high quality bases) assembled on 2006-04-20
> BO12150.3prime
ATGGTCTAGAAAGCTTGCTCTTCTATCCTGCATTACCACCTGCTTTAGGG
CGCCCGCTCGTACGCTTGATTTAACCTCATGTCCGCCCAGGGAGGCGGTT
CCATCGCGAGCGATGTACAGTTGAAGGCCTGAGGTTTCTGCGGATTCCTC
CAGCTGATCAAGTTTAGTGTCCTTTAAAATCTCATCAATTAATGAGTCTG
GATTGACCCGTGTCTCCTCCACTCGGTCGGAAACACGTGGCCCGTCATCG
AGCGCGCCCTTTTTGCGCTTCTCACCGCTGCTTTTCGTCCGATCTAGAGA
TCCCGTCTCACTAATAACTAACGAACCGGAGCTGGGATTCCTAGCATGTC
CCGAATCACCCTCAGAACTTTGCCTTGAATGTTGACTGTGCGAAAAACTA
CTGTAACCCGAACCTTTTGACATTTGACTAGTATTACTGGAATTTCTTGA
ATGACCCATTTCTATGAGGGTGGCGTTGCCGGCGCCAGTAAATCCGATAG
CCCCTCCTGTTGTTCCGTAATTGTTGCTGCCAATGATTCCCAGTTGCGGT
AGCGCCTGCGTCACAGGACTAATAGGATTAGCTACGACGACTGAGCCATG
CTGCTGGAGATTATCCGTAGTCAACGTTACCCCCGATTCCGAGGACTCCG
ACAAGCCGGAGTCTGTCACAATAGCTGCTATCAAAGCCTGGTTATCGATA
TCCTCCTCCTTTGTGGTGGAAACGGGTCGGGTTCCGGGTAACGACTGATT
ACCGGGGATGCCGCCCAAAGTGACTCCACTACCGCCCCAGGAAACGGATG
CGCCACCGCTTCCGCCACCTATACTGGGCAATGCGGTAGCCCGTGGAATT
TGCAGGCCGACTCCAGTGGCTGCATTTGAAAAATCATCTATTGA
BO12150.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8671-PB | 1404 | CG8671-RB | 526..1401 | 894..19 | 4305 | 99.6 | Minus |
| CG8671-PA | 3027 | CG8671-RA | 526..1079 | 894..341 | 2695 | 99.4 | Minus |
| CG8671-PA | 3027 | CG8671-RA | 2703..3024 | 340..19 | 1610 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:56:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8671-RB | 2431 | CG8671-RB | 1030..1905 | 894..19 | 4335 | 99.7 | Minus |
| CG8671-RF | 3739 | CG8671-RF | 1105..1658 | 894..341 | 2725 | 99.5 | Minus |
| CG8671-RE | 4183 | CG8671-RE | 1105..1658 | 894..341 | 2725 | 99.5 | Minus |
| CG8671-RF | 3739 | CG8671-RF | 2890..3213 | 342..19 | 1620 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:56:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21275378..21275656 | 702..424 | 1395 | 100 | Minus |
| 2L | 23513712 | 2L | 21281130..21281337 | 342..135 | 1040 | 100 | Minus |
| 2L | 23513712 | 2L | 21274237..21274429 | 894..702 | 920 | 98.4 | Minus |
| 2L | 23513712 | 2L | 21281396..21281511 | 134..19 | 580 | 100 | Minus |
| 2L | 23513712 | 2L | 21275724..21275807 | 423..340 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:56:58 has no hits.
BO12150.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:33 Download gff for
BO12150.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8671-PB | 527..1404 | 18..893 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:57 Download gff for
BO12150.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8671-PB | 527..1404 | 18..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:57:21 Download gff for
BO12150.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8671-RB | 1031..1905 | 19..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:37 Download gff for
BO12150.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8671-RB | 1031..1905 | 19..893 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:37 Download gff for
BO12150.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21281132..21281337 | 135..340 | 100 | -> | Minus |
| 2L | 21281396..21281511 | 19..134 | 100 | | Minus |
| 2L | 21274238..21274429 | 702..893 | 98 | -> | Minus |
| 2L | 21275379..21275656 | 424..701 | 100 | -> | Minus |
| 2L | 21275724..21275806 | 341..423 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:57:21 Download gff for
BO12150.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21281396..21281511 | 19..134 | 100 | | Minus |
| arm_2L | 21274238..21274429 | 702..893 | 98 | -> | Minus |
| arm_2L | 21275379..21275656 | 424..701 | 100 | -> | Minus |
| arm_2L | 21275724..21275806 | 341..423 | 100 | -> | Minus |
| arm_2L | 21281132..21281337 | 135..340 | 100 | -> | Minus |
BO12150.5prime Sequence
846 bp (794 high quality bases) assembled on 2006-04-20
> BO12150.5prime
GAAGTTATCAGTCGACATGACACTTCTTGGGCCTAGCGCCCCAGGCATGG
CCTTTATGATGAAAAAGAAGAAGTACAAGTTCAACGTTGAAGTGCAGCTG
CAGGATTTGGTAGAGGTGGCCCTGGTCAATGAGGTGCTGTTCGCAAAGAT
ACGGTTGCTCGATGGAGGTTCCTTTCAGGAGTACAGTAGTCGCGAGGAAG
TGCGCAACCATCGAGTAGAATGGAACCGCAGCTTTGAGTTTCCTTGCAAG
ATGAGCGCGAATGCTTCAACCGGCGTTTTAGATCCTTGCCATCTGCGTAT
ATCAATACGCAAAGAAATGAAGGGCGGACGAAGTTACTATAAGCTTGGTT
TTATCGACCTCAATCTGGCCGAATTCGCCGGCGCCGGCCTCACCTCCCGT
CGGTTTCTCCTGGAGGGCTATGACTCAAGACACCGCCTAGACAACTCGAT
GTTGCGTGTGAGCATTAAGATGCATATGCTTAGCGGTGACATTCTGTTCA
AAGCACCCACGCCAAATCTAAAAAGCAAGCAGAGCAAGCCTTCAATAGAT
GATTTTTCAAATGCAGCCACTGGAGTCGGCCTGCAAATTCCAACGGCTAC
CGCATTGCCCAGTATAGGTGGCGGAAGCGGTGGCGCATCCGTTTCCTTGG
GCGGTAGTGGAGTCACTTTGGGCGGCATCCCCGGTAATCAGTCGTTACCC
GGAACCCGACCCGTTTCCACCACAAAGGAGGAGGATATCGATTACCAGGC
TTTGATAGCAGCTATTGTGACAGACTCCGGCTTGTCGGAGTCCTCGGAAT
CGGGGGTAACGTTGACTACGGATAATCTCCAGCAAGATGGCTCAAT
BO12150.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8671-PA | 3027 | CG8671-RA | 1..818 | 17..834 | 4065 | 99.8 | Plus |
| CG8671-PB | 1404 | CG8671-RB | 1..818 | 17..834 | 4065 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:33:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8671-RF | 3739 | CG8671-RF | 580..1407 | 17..844 | 4095 | 99.6 | Plus |
| CG8671-RE | 4183 | CG8671-RE | 580..1407 | 17..844 | 4095 | 99.6 | Plus |
| CG8671-RD | 3603 | CG8671-RD | 636..1463 | 17..844 | 4095 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:33:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21273827..21274139 | 192..504 | 1565 | 100 | Plus |
| 2L | 23513712 | 2L | 21274200..21274429 | 505..734 | 1150 | 100 | Plus |
| 2L | 23513712 | 2L | 21273596..21273771 | 17..192 | 880 | 100 | Plus |
| 2L | 23513712 | 2L | 21275378..21275488 | 734..844 | 510 | 97.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:33:05 has no hits.
BO12150.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:34 Download gff for
BO12150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8671-PA | 1..830 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:59 Download gff for
BO12150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8671-PB | 1..830 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:50:17 Download gff for
BO12150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8671-RD | 636..1465 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:49 Download gff for
BO12150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8671-RD | 636..1465 | 17..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:49 Download gff for
BO12150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21274200..21274429 | 505..734 | 100 | -> | Plus |
| 2L | 21275379..21275490 | 735..846 | 96 | | Plus |
| 2L | 21273593..21273771 | 11..192 | 97 | -> | Plus |
| 2L | 21273828..21274139 | 193..504 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:50:17 Download gff for
BO12150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21274200..21274429 | 505..734 | 100 | -> | Plus |
| arm_2L | 21273828..21274139 | 193..504 | 100 | -> | Plus |
| arm_2L | 21273593..21273771 | 11..192 | 97 | -> | Plus |
| arm_2L | 21275379..21275490 | 735..846 | 96 | | Plus |
BO12150.complete Sequence
1435 bp assembled on 2006-10-11
GenBank Submission: FJ632332
> BO12150.complete
GAAGTTATCAGTCGACATGACACTTCTTGGGCCTAGCGCCCCAGGCATGG
CCTTTATGATGAAAAAGAAGAAGTACAAGTTCAACGTTGAAGTGCAGCTG
CAGGATTTGGTAGAGGTGGCCCTGGTCAATGAGGTGCTGTTCGCAAAGAT
ACGGTTGCTCGATGGAGGTTCCTTTCAGGAGTACAGTAGTCGCGAGGAAG
TGCGCAACCATCGAGTAGAATGGAACCGCAGCTTTGAGTTTCCTTGCAAG
ATGAGCGCGAATGCTTCAACCGGCGTTTTAGATCCTTGCCATCTGCGTAT
ATCAATACGCAAAGAAATGAAGGGCGGACGAAGTTACTATAAGCTTGGTT
TTATCGACCTCAATCTGGCCGAATTCGCCGGCGCCGGCCTCACCTCCCGT
CGGTTTCTCCTGGAGGGCTATGACTCAAGACACCGCCTAGACAACTCGAT
GTTGCGTGTGAGCATTAAGATGCATATGCTTAGCGGTGACATTCTGTTCA
AAGCACCCACGCCAAATCTAAAAAGCAAGCAGAGCAAGCCTTCAATAGAT
GATTTTTCAAATGCAGCCACTGGAGTCGGCCTGCAAATTCCAACGGCTAC
CGCATTGCCCAGTATAGGTGGCGGAAGCGGTGGCGCATCCGTTTCCTTGG
GCGGTAGTGGAGTCACTTTGGGCGGCATCCCCGGTAATCAGTCGTTACCC
GGAACCCGACCCGTTTCCACCACAAAGGAGGAGGATATCGATAACCAGGC
TTTGATAGCAGCTATTGTGACAGACTCCGGCTTGTCGGAGTCCTCGGAAT
CGGGGGTAACGTTGACTACGGATAATCTCCAGCAGCATGGCTCAGTCGTC
GTAGCTAATCCTATTAGTCCTGTGACGCAGGCGCTACCGCAACTGGGAAT
CATTGGCAGCAACAATTACGGAACAACAGGAGGGGCTATCGGATTTACTG
GCGCCGGCAACGCCACCCTCATAGAAATGGGTCATTCAAGAAATTCCAGT
AATACTAGTCAAATGTCAAAAGGTTCGGGTTACAGTAGTTTTTCGCACAG
TCAACATTCAAGGCAAAGTTCTGAGGGTGATTCGGGACATGCTAGGAATC
CCAGCTCCGGTTCGTTAGTTATTAGTGAGACGGGATCTCTAGATCGGACG
AAAAGCAGCGGTGAGAAGCGCAAAAAGGGCGCGCTCGATGACGGGCCACG
TGTTTCCGACCGAGTGGAGGAGACACGGGTCAATCCAGACTCATTAATTG
ATGAGATTTTAAAGGACACTAAACTTGATCAGCTGGAGGAATCCGCAGAA
ACCTCAGGCCTTCAACTGTACATCGCTCGCGATGGAACCGCCTCCCTGGG
CGGACATGAGGTTAAATCAAGCGTACGAGCGGGCGCCCTAAAGCAGGTGG
TAATGCAGGATAGAAGAGCAAGCTTTCTAGACCAT
BO12150.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:04:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8671-RB | 1404 | CG8671-PB | 1..1401 | 17..1417 | 7005 | 100 | Plus |
| CG8671-RF | 2637 | CG8671-PF | 1..1079 | 17..1095 | 5395 | 100 | Plus |
| CG8671-RE | 2604 | CG8671-PE | 1..1079 | 17..1095 | 5395 | 100 | Plus |
| CG8671-RF | 2637 | CG8671-PF | 2311..2634 | 1094..1417 | 1620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:04:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8671-RB | 2431 | CG8671-RB | 505..1905 | 17..1417 | 7005 | 100 | Plus |
| CG8671-RF | 3739 | CG8671-RF | 580..1658 | 17..1095 | 5395 | 100 | Plus |
| CG8671-RE | 4183 | CG8671-RE | 580..1658 | 17..1095 | 5395 | 100 | Plus |
| CG8671-RF | 3739 | CG8671-RF | 2890..3213 | 1094..1417 | 1620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:04:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21273827..21274139 | 192..504 | 1565 | 100 | Plus |
| 2L | 23513712 | 2L | 21275378..21275656 | 734..1012 | 1395 | 100 | Plus |
| 2L | 23513712 | 2L | 21274200..21274429 | 505..734 | 1150 | 100 | Plus |
| 2L | 23513712 | 2L | 21281130..21281337 | 1094..1301 | 1040 | 100 | Plus |
| 2L | 23513712 | 2L | 21273596..21273771 | 17..192 | 880 | 100 | Plus |
| 2L | 23513712 | 2L | 21281396..21281511 | 1302..1417 | 580 | 100 | Plus |
| 2L | 23513712 | 2L | 21275724..21275807 | 1013..1096 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:04:52 has no hits.
BO12150.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:20 Download gff for
BO12150.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8671-RB | 1..1404 | 17..1418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:24 Download gff for
BO12150.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8671-RB | 500..1900 | 17..1417 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:49:44 Download gff for
BO12150.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8671-RB | 505..1905 | 17..1419 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:20 Download gff for
BO12150.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8671-RB | 500..1900 | 17..1417 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:32 Download gff for
BO12150.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8671-RB | 505..1905 | 17..1419 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:32 Download gff for
BO12150.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21275379..21275656 | 735..1012 | 100 | -> | Plus |
| 2L | 21275724..21275806 | 1013..1095 | 100 | -> | Plus |
| 2L | 21281132..21281337 | 1096..1301 | 100 | -> | Plus |
| 2L | 21281396..21281511 | 1302..1419 | 98 | | Plus |
| 2L | 21273828..21274139 | 193..504 | 100 | -> | Plus |
| 2L | 21274200..21274429 | 505..734 | 100 | -> | Plus |
| 2L | 21273596..21273771 | 17..192 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:49:44 Download gff for
BO12150.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21273596..21273771 | 17..192 | 100 | -> | Plus |
| arm_2L | 21273828..21274139 | 193..504 | 100 | -> | Plus |
| arm_2L | 21274200..21274429 | 505..734 | 100 | -> | Plus |
| arm_2L | 21275379..21275656 | 735..1012 | 100 | -> | Plus |
| arm_2L | 21275724..21275806 | 1013..1095 | 100 | -> | Plus |
| arm_2L | 21281132..21281337 | 1096..1301 | 100 | -> | Plus |
| arm_2L | 21281396..21281511 | 1302..1419 | 98 | | Plus |
BO12150.pep Sequence
Translation from 16 to 1435
> BO12150.pep
MTLLGPSAPGMAFMMKKKKYKFNVEVQLQDLVEVALVNEVLFAKIRLLDG
GSFQEYSSREEVRNHRVEWNRSFEFPCKMSANASTGVLDPCHLRISIRKE
MKGGRSYYKLGFIDLNLAEFAGAGLTSRRFLLEGYDSRHRLDNSMLRVSI
KMHMLSGDILFKAPTPNLKSKQSKPSIDDFSNAATGVGLQIPTATALPSI
GGGSGGASVSLGGSGVTLGGIPGNQSLPGTRPVSTTKEEDIDNQALIAAI
VTDSGLSESSESGVTLTTDNLQQHGSVVVANPISPVTQALPQLGIIGSNN
YGTTGGAIGFTGAGNATLIEMGHSRNSSNTSQMSKGSGYSSFSHSQHSRQ
SSEGDSGHARNPSSGSLVISETGSLDRTKSSGEKRKKGALDDGPRVSDRV
EETRVNPDSLIDEILKDTKLDQLEESAETSGLQLYIARDGTASLGGHEVK
SSVRAGALKQVVMQDRRASFLDH
BO12150.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8671-PB | 467 | CG8671-PB | 1..467 | 1..467 | 2355 | 100 | Plus |
| CG8671-PD | 655 | CG8671-PD | 1..361 | 1..361 | 1836 | 100 | Plus |
| CG8671-PE | 867 | CG8671-PE | 1..360 | 1..360 | 1830 | 100 | Plus |
| CG8671-PC | 851 | CG8671-PC | 1..359 | 1..359 | 1825 | 100 | Plus |
| CG8671-PF | 878 | CG8671-PF | 1..359 | 1..359 | 1825 | 100 | Plus |
| CG8671-PE | 867 | CG8671-PE | 760..867 | 360..467 | 530 | 100 | Plus |
| CG8671-PC | 851 | CG8671-PC | 744..851 | 360..467 | 530 | 100 | Plus |
| CG8671-PD | 655 | CG8671-PD | 549..655 | 361..467 | 525 | 100 | Plus |
