Clone Sequence Records
BO12151.3prime Sequence
767 bp (766 high quality bases) assembled on 2006-04-20
> BO12151.3prime
ATGGTCTAGAAAGCTTGCGATCTTCAAATTAACGCCGGCGTAACCCTTGG
CATTGAGCCCAGTGACCTGGAAGGTGGTACCAGCTGGTTTTGGCTGGTCG
AACTTGTTGGCGGTTGTCACATACAAAATATCCAAATTGGGACCTCCAAA
AGCCACCGAGGTGATTTGGGTGGTTGGAATTTTGATCTCCAGCAGAATTT
TACCGGTGCTTGGATTGACCTTGAAGACGGTGCCACCATTGAAGGTGGCC
ACGTAGATATTGCCATCGGTGTCTACGGTCATGCCATCAGGGAACAATGG
TCCTTCGGGCCGAATCTTCCTCAGATCGAAGATGACCTTTGGGTTGCTTA
CGGCGCCGGTGCTCTGATTGTAGTCATAGGCCAATACCTCGTGGTTGTTG
GTGTCGATGAAGTAGAACTTCTTGGCCTTGACATCCCAGGCCAGGCCATT
GGATATGCCCACCTTGCTACGGATAGCGTTGGGCTGTCCACCGGCCTGCC
AGCTGTAGAGCTCACCCTTCCATTGGGTGAATATGTCGCCACTGTCGGCC
ATGGTGCCACCGTAAAAACGGCCATTGGGATCGGTTTTGGCATCATTAAG
GCGGTTTTCCTTCAGGTCCGGCTGCACCTCGAACAGGGTGCGAGTGACCT
TGGCCACTGCGGAGACTCCATCCCACTGGACGATGACCGTACGAAGACCG
CATCCTACGGCAAACTCCTGCGGTTTGTTCTCAACCGGCAGAATGAACGA
TGCAAATATCTCGCCCT
BO12151.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7390-PA | 912 | smp-30-RA | 161..909 | 767..19 | 3745 | 100 | Minus |
CG7390-PB | 912 | smp-30-RB | 161..909 | 767..19 | 3745 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:18:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
smp-30-RD | 1297 | CG7390-RD | 482..1230 | 767..19 | 3745 | 100 | Minus |
smp-30-RC | 1102 | CG7390-RC | 287..1035 | 767..19 | 3745 | 100 | Minus |
smp-30-RB | 1219 | CG7390-RB | 213..961 | 767..19 | 3745 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:18:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14746407..14746965 | 209..767 | 2795 | 100 | Plus |
3R | 32079331 | 3R | 14746159..14746350 | 19..210 | 960 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:18:33 has no hits.
BO12151.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:35 Download gff for
BO12151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7390-PB | 161..912 | 18..767 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:01 Download gff for
BO12151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7390-PB | 161..912 | 18..767 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:25:17 Download gff for
BO12151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smp-30-RB | 213..967 | 11..767 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:28:28 Download gff for
BO12151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smp-30-RB | 213..967 | 11..767 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:28:28 Download gff for
BO12151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14746153..14746348 | 11..208 | 97 | <- | Plus |
3R | 14746407..14746965 | 209..767 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:25:17 Download gff for
BO12151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10571875..10572070 | 11..208 | 97 | <- | Plus |
arm_3R | 10572129..10572687 | 209..767 | 100 | | Plus |
BO12151.5prime Sequence
871 bp (764 high quality bases) assembled on 2006-04-20
> BO12151.5prime
GAAGTTATCAGTCGACATGTCATACAAGGTTGAAGCTGTTCCCGATTCCT
ACGCCGCCCTGGGCGAGGGACCCCACTGGGATGTTGATCGCCAGAGTCTG
TACTACGTGGACCTCGAATCCGCCGGCATTAATCGTTATGATTTCAAGCA
GAACAAAGTGTACAGGGCTAAAATCGAGGGCGAGATATTTGCATCGTTCA
TTCTGCCGGTTGAGAACAAACCGCAGGAGTTTGCCGTAGGATGCGGTCTT
CGTACGGTCATCGTCCAGTGGGATGGAGTCTCCGCAGTGGCCAAGGTCAC
TCGCACCCTGTTCGAGGTGCAGCCGGACCTGAAGGAAAACCGCCTTAATG
ATGCCAAAACCGATCCCAATGGCCGTTTTTACGGTGGCACCATGGCCGAC
AGTGGCGACATATTCACCCAATGGAAGGGTGAGCTCTACAGCTGGCAGGC
CGGTGGACAGCCCAACGCTATCCGTAGCAAGGTGGGCATATCCAATGGCC
TGGCCTGGGATGTCAAGGCCAAGAAGTTCTACTTCATCGACACCAACAAC
CACGAGGTATTGGCCTATGACTACAATCAGAGCACCGGCGCCGTAAGCAA
CCCAAAGGTCATCTTCGATCTGAGGAAGATTCGGCCCGAAGGACCATTGT
TCCCTGATGGCATGACCGTAGACACCGATGGCAATATCTACGTGGCCACC
TTCAATGGTGGCACCGTCTTCAAGGTCAATCCAAGCACCGGTAAAATTCT
GCTGGAGATCAAAATTCCAACCACCCAAATCACCTCGGTGGCTTTTGGAG
GTCCCAATTTGGATATTTTGTATGTGACAACCGCCAAACAGTTCGACCAG
CCAAAACCAGCTGGTACCACC
BO12151.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7390-PA | 912 | smp-30-RA | 1..855 | 17..871 | 4225 | 99.7 | Plus |
CG7390-PB | 912 | smp-30-RB | 1..855 | 17..871 | 4225 | 99.7 | Plus |
CG1803-PA | 912 | regucalcin-RA | 25..68 | 41..84 | 145 | 93.1 | Plus |
CG1803-PC | 912 | regucalcin-RC | 25..68 | 41..84 | 145 | 93.1 | Plus |
CG1803-PB | 912 | regucalcin-RB | 25..68 | 41..84 | 145 | 93.1 | Plus |
CG1803-PD | 960 | regucalcin-RD | 73..116 | 41..84 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:53:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
smp-30-RD | 1297 | CG7390-RD | 322..1176 | 17..871 | 4245 | 99.8 | Plus |
smp-30-RC | 1102 | CG7390-RC | 127..981 | 17..871 | 4245 | 99.8 | Plus |
smp-30-RB | 1219 | CG7390-RB | 53..907 | 17..871 | 4245 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:53:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14746407..14747125 | 735..17 | 3595 | 100 | Minus |
3R | 32079331 | 3R | 14746213..14746350 | 871..734 | 660 | 98.6 | Minus |
X | 23542271 | X | 12016003..12016718 | 17..732 | 475 | 71.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:53:55 has no hits.
BO12151.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:36 Download gff for
BO12151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7390-PB | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:02 Download gff for
BO12151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7390-PB | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:05:10 Download gff for
BO12151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smp-30-RB | 53..907 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:47:05 Download gff for
BO12151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smp-30-RB | 53..907 | 17..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:47:05 Download gff for
BO12151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14746213..14746348 | 736..871 | 98 | <- | Minus |
3R | 14746407..14747129 | 12..735 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:05:10 Download gff for
BO12151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10571935..10572070 | 736..871 | 98 | <- | Minus |
arm_3R | 10572129..10572851 | 12..735 | 99 | | Minus |
BO12151.complete Sequence
943 bp assembled on 2006-10-11
GenBank Submission: FJ632333
> BO12151.complete
GAAGTTATCAGTCGACATGTCATACAAGGTTGAAGCTGTTCCCGATTCCT
ACGCCGCCCTGGGCGAGGGACCCCACTGGGATGTTGATCGCCAGAGTCTG
TACTACGTGGACCTCGAATCCGCCGGCATTAATCGTTATGATTTCAAGCA
GAACAAAGTGTACAGGGCTAAAATCGAGGGCGAGATATTTGCATCGTTCA
TTCTGCCGGTTGAGAACAAACCGCAGGAGTTTGCCGTAGGATGCGGTCTT
CGTACGGTCATCGTCCAGTGGGATGGAGTCTCCGCAGTGGCCAAGGTCAC
TCGCACCCTGTTCGAGGTGCAGCCGGACCTGAAGGAAAACCGCCTTAATG
ATGCCAAAACCGATCCCAATGGCCGTTTTTACGGTGGCACCATGGCCGAC
AGTGGCGACATATTCACCCAATGGAAGGGTGAGCTCTACAGCTGGCAGGC
CGGTGGACAGCCCAACGCTATCCGTAGCAAGGTGGGCATATCCAATGGCC
TGGCCTGGGATGTCAAGGCCAAGAAGTTCTACTTCATCGACACCAACAAC
CACGAGGTATTGGCCTATGACTACAATCAGAGCACCGGCGCCGTAAGCAA
CCCAAAGGTCATCTTCGATCTGAGGAAGATTCGGCCCGAAGGACCATTGT
TCCCTGATGGCATGACCGTAGACACCGATGGCAATATCTACGTGGCCACC
TTCAATGGTGGCACCGTCTTCAAGGTCAATCCAAGCACCGGTAAAATTCT
GCTGGAGATCAAAATTCCAACCACCCAAATCACCTCGGTGGCTTTTGGAG
GTCCCAATTTGGATATTTTGTATGTGACAACCGCCAACAAGTTCGACCAG
CCAAAACCAGCTGGTACCACCTTCCAGGTCACTGGGCTCAATGCCAAGGG
TTACGCCGGCGTTAATTTGAAGATCGCAAGCTTTCTAGACCAT
BO12151.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:16:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
smp-30-RD | 912 | CG7390-PD | 1..909 | 17..925 | 4545 | 100 | Plus |
smp-30-RC | 921 | CG7390-PC | 10..918 | 17..925 | 4545 | 100 | Plus |
smp-30-RB | 912 | CG7390-PB | 1..909 | 17..925 | 4545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
smp-30-RD | 1297 | CG7390-RD | 322..1230 | 17..925 | 4545 | 100 | Plus |
smp-30-RC | 1102 | CG7390-RC | 127..1035 | 17..925 | 4545 | 100 | Plus |
smp-30-RB | 1219 | CG7390-RB | 53..961 | 17..925 | 4545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14746407..14747125 | 735..17 | 3595 | 100 | Minus |
3R | 32079331 | 3R | 14746159..14746350 | 925..734 | 960 | 100 | Minus |
X | 23542271 | X | 12016003..12016718 | 17..732 | 475 | 71.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:16:17 has no hits.
BO12151.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:26 Download gff for
BO12151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smp-30-RB | 1..912 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:11 Download gff for
BO12151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smp-30-RB | 49..963 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:26 Download gff for
BO12151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smp-30-RB | 53..961 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:26 Download gff for
BO12151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smp-30-RB | 49..963 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:19 Download gff for
BO12151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smp-30-RB | 53..961 | 17..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:19 Download gff for
BO12151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14746157..14746348 | 736..927 | 98 | <- | Minus |
3R | 14746407..14747125 | 17..735 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:26 Download gff for
BO12151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10571879..10572070 | 736..927 | 98 | <- | Minus |
arm_3R | 10572129..10572847 | 17..735 | 100 | | Minus |
BO12151.pep Sequence
Translation from 16 to 943
> BO12151.pep
MSYKVEAVPDSYAALGEGPHWDVDRQSLYYVDLESAGINRYDFKQNKVYR
AKIEGEIFASFILPVENKPQEFAVGCGLRTVIVQWDGVSAVAKVTRTLFE
VQPDLKENRLNDAKTDPNGRFYGGTMADSGDIFTQWKGELYSWQAGGQPN
AIRSKVGISNGLAWDVKAKKFYFIDTNNHEVLAYDYNQSTGAVSNPKVIF
DLRKIRPEGPLFPDGMTVDTDGNIYVATFNGGTVFKVNPSTGKILLEIKI
PTTQITSVAFGGPNLDILYVTTANKFDQPKPAGTTFQVTGLNAKGYAGVN
LKIASFLDH
BO12151.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
smp-30-PD | 303 | CG7390-PD | 1..303 | 1..303 | 1599 | 100 | Plus |
smp-30-PB | 303 | CG7390-PB | 1..303 | 1..303 | 1599 | 100 | Plus |
smp-30-PA | 303 | CG7390-PA | 1..303 | 1..303 | 1599 | 100 | Plus |
smp-30-PC | 306 | CG7390-PC | 4..306 | 1..303 | 1599 | 100 | Plus |
regucalcin-PB | 303 | CG1803-PB | 1..303 | 1..303 | 1173 | 71.9 | Plus |