Clone Sequence Records
BO12153.3prime Sequence
479 bp (478 high quality bases) assembled on 2006-04-20
> BO12153.3prime
ATGGTCTAGAAAGCTTGCCGCGGTCTCCATGGGCTGGGCGGCGGTCTCCT
CGGTGTACTTGCCCTTATCCTTGCCGAGAGCGGCCAGACGACCCTTGCCG
CGACGCTCCAGGATGGCCTTGCGGTCCTTGTCGAGCTTCAGCTTGACGAT
CAGCACCTTGCTGGGATGGATGCCCACGTAGACGTTGGTGCCGTTGGCGT
TCTCGCGCTGGATCTTCTCGACGTAGACGACGAACTTTTTGCGGTAGGCC
TGGACCACCTTGCCCACCTGGTTGCCCTTGAAGTGGCCGCGGATCACCTG
GACCTCATCGTCGCGGCGGATGGGCATGGAACGCACATTGTACTTCTGGC
GCAGCTCCTTGGAGAGGGGAGCGGACATGAGGCGCCTGCGAATGTGGGAG
GGAGCCTGGAAGTGACGCTTGCGGTTCTTCCTGCGCGACGACGACACGAA
CGGGTTCTGTTTCATGTCGACTGATAACT
BO12153.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6846-PA | 450 | RpL26-RA | 1..447 | 465..19 | 2235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:34:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL26-RB | 652 | CG6846-RB | 55..501 | 465..19 | 2235 | 100 | Minus |
RpL26-RA | 648 | CG6846-RA | 51..497 | 465..19 | 2235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:34:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18899320..18899766 | 465..19 | 2235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:34:52 has no hits.
BO12153.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:39 Download gff for
BO12153.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL26-PA | 1..450 | 15..465 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:06 Download gff for
BO12153.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6846-PA | 1..450 | 15..465 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:29:20 Download gff for
BO12153.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL26-RA | 45..500 | 15..472 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:57 Download gff for
BO12153.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL26-RA | 45..500 | 15..472 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:57 Download gff for
BO12153.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18899314..18899769 | 15..472 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:29:20 Download gff for
BO12153.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18892414..18892869 | 15..472 | 98 | | Minus |
BO12153.5prime Sequence
479 bp (478 high quality bases) assembled on 2006-04-20
> BO12153.5prime
GAAGTTATCAGTCGACATGAAACAGAACCCGTTCGTGTCGTCGTCGCGCA
GGAAGAACCGCAAGCGTCACTTCCAGGCTCCCTCCCACATTCGCAGGCGC
CTCATGTCCGCTCCCCTCTCCAAGGAGCTGCGCCAGAAGTACAATGTGCG
TTCCATGCCCATCCGCCGCGACGATGAGGTCCAGGTGATCCGCGGCCACT
TCAAGGGCAACCAGGTGGGCAAGGTGGTCCAGGCCTACCGCAAAAAGTTC
GTCGTCTACGTCGAGAAGATCCAGCGCGAGAACGCCAACGGCACCAACGT
CTACGTGGGCATCCATCCCAGCAAGGTGCTGATCGTCAAGCTGAAGCTCG
ACAAGGACCGCAAGGCCATCCTGGAGCGTCGCGGCAAGGGTCGTCTGGCC
GCTCTCGGCAAGGATAAGGGCAAGTACACCGAGGAGACCGCCGCCCAGCC
CATGGAGACCGCGGCAAGCTTTCTAGACC
BO12153.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6846-PA | 450 | RpL26-RA | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:21:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL26-RB | 652 | CG6846-RB | 55..501 | 17..463 | 2235 | 100 | Plus |
RpL26-RA | 648 | CG6846-RA | 51..497 | 17..463 | 2235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:21:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18899320..18899766 | 17..463 | 2235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 09:21:38 has no hits.
BO12153.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:40 Download gff for
BO12153.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL26-PA | 1..450 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:08 Download gff for
BO12153.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6846-PA | 1..450 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:18:31 Download gff for
BO12153.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL26-RA | 45..500 | 10..467 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:48:38 Download gff for
BO12153.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL26-RA | 45..500 | 10..467 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:48:38 Download gff for
BO12153.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18899314..18899769 | 10..467 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:18:31 Download gff for
BO12153.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18892414..18892869 | 10..467 | 98 | | Plus |
BO12153.complete Sequence
481 bp assembled on 2006-10-11
GenBank Submission: FJ632334
> BO12153.complete
GAAGTTATCAGTCGACATGAAACAGAACCCGTTCGTGTCGTCGTCGCGCA
GGAAGAACCGCAAGCGTCACTTCCAGGCTCCCTCCCACATTCGCAGGCGC
CTCATGTCCGCTCCCCTCTCCAAGGAGCTGCGCCAGAAGTACAATGTGCG
TTCCATGCCCATCCGCCGCGACGATGAGGTCCAGGTGATCCGCGGCCACT
TCAAGGGCAACCAGGTGGGCAAGGTGGTCCAGGCCTACCGCAAAAAGTTC
GTCGTCTACGTCGAGAAGATCCAGCGCGAGAACGCCAACGGCACCAACGT
CTACGTGGGCATCCATCCCAGCAAGGTGCTGATCGTCAAGCTGAAGCTCG
ACAAGGACCGCAAGGCCATCCTGGAGCGTCGCGGCAAGGGTCGTCTGGCC
GCTCTCGGCAAGGATAAGGGCAAGTACACCGAGGAGACCGCCGCCCAGCC
CATGGAGACCGCGGCAAGCTTTCTAGACCAT
BO12153.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:34:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL26-RB | 450 | CG6846-PB | 1..447 | 17..463 | 2235 | 100 | Plus |
RpL26-RA | 450 | CG6846-PA | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:34:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL26-RB | 652 | CG6846-RB | 55..501 | 17..463 | 2235 | 100 | Plus |
RpL26-RA | 648 | CG6846-RA | 51..497 | 17..463 | 2235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:34:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18899320..18899766 | 17..463 | 2235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:34:38 has no hits.
BO12153.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:27 Download gff for
BO12153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL26-RA | 1..450 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:13 Download gff for
BO12153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL26-RA | 75..530 | 10..467 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:51 Download gff for
BO12153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL26-RA | 51..497 | 17..465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:27 Download gff for
BO12153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL26-RA | 75..530 | 10..467 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:25 Download gff for
BO12153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL26-RA | 51..497 | 17..465 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:25 Download gff for
BO12153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18899320..18899766 | 17..465 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:51 Download gff for
BO12153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18892420..18892866 | 17..465 | 99 | | Plus |
BO12153.pep Sequence
Translation from 16 to 481
> BO12153.pep
MKQNPFVSSSRRKNRKRHFQAPSHIRRRLMSAPLSKELRQKYNVRSMPIR
RDDEVQVIRGHFKGNQVGKVVQAYRKKFVVYVEKIQRENANGTNVYVGIH
PSKVLIVKLKLDKDRKAILERRGKGRLAALGKDKGKYTEETAAQPMETAA
SFLDH
BO12153.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL26-PB | 149 | CG6846-PB | 1..149 | 1..149 | 756 | 100 | Plus |
RpL26-PA | 149 | CG6846-PA | 1..149 | 1..149 | 756 | 100 | Plus |