Clone BO12153 Report

Search the DGRC for BO12153

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptRpL26-RA
Protein status:BO12153.pep: validated full length
Sequenced Size:481

Clone Sequence Records

BO12153.3prime Sequence

479 bp (478 high quality bases) assembled on 2006-04-20

> BO12153.3prime
ATGGTCTAGAAAGCTTGCCGCGGTCTCCATGGGCTGGGCGGCGGTCTCCT
CGGTGTACTTGCCCTTATCCTTGCCGAGAGCGGCCAGACGACCCTTGCCG
CGACGCTCCAGGATGGCCTTGCGGTCCTTGTCGAGCTTCAGCTTGACGAT
CAGCACCTTGCTGGGATGGATGCCCACGTAGACGTTGGTGCCGTTGGCGT
TCTCGCGCTGGATCTTCTCGACGTAGACGACGAACTTTTTGCGGTAGGCC
TGGACCACCTTGCCCACCTGGTTGCCCTTGAAGTGGCCGCGGATCACCTG
GACCTCATCGTCGCGGCGGATGGGCATGGAACGCACATTGTACTTCTGGC
GCAGCTCCTTGGAGAGGGGAGCGGACATGAGGCGCCTGCGAATGTGGGAG
GGAGCCTGGAAGTGACGCTTGCGGTTCTTCCTGCGCGACGACGACACGAA
CGGGTTCTGTTTCATGTCGACTGATAACT

BO12153.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6846-PA 450 RpL26-RA 1..447 465..19 2235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
RpL26-RB 652 CG6846-RB 55..501 465..19 2235 100 Minus
RpL26-RA 648 CG6846-RA 51..497 465..19 2235 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18899320..18899766 465..19 2235 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:34:52 has no hits.

BO12153.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:39 Download gff for BO12153.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL26-PA 1..450 15..465 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:06 Download gff for BO12153.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6846-PA 1..450 15..465 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:29:20 Download gff for BO12153.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL26-RA 45..500 15..472 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:57 Download gff for BO12153.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL26-RA 45..500 15..472 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:57 Download gff for BO12153.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18899314..18899769 15..472 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:29:20 Download gff for BO12153.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18892414..18892869 15..472 98   Minus

BO12153.5prime Sequence

479 bp (478 high quality bases) assembled on 2006-04-20

> BO12153.5prime
GAAGTTATCAGTCGACATGAAACAGAACCCGTTCGTGTCGTCGTCGCGCA
GGAAGAACCGCAAGCGTCACTTCCAGGCTCCCTCCCACATTCGCAGGCGC
CTCATGTCCGCTCCCCTCTCCAAGGAGCTGCGCCAGAAGTACAATGTGCG
TTCCATGCCCATCCGCCGCGACGATGAGGTCCAGGTGATCCGCGGCCACT
TCAAGGGCAACCAGGTGGGCAAGGTGGTCCAGGCCTACCGCAAAAAGTTC
GTCGTCTACGTCGAGAAGATCCAGCGCGAGAACGCCAACGGCACCAACGT
CTACGTGGGCATCCATCCCAGCAAGGTGCTGATCGTCAAGCTGAAGCTCG
ACAAGGACCGCAAGGCCATCCTGGAGCGTCGCGGCAAGGGTCGTCTGGCC
GCTCTCGGCAAGGATAAGGGCAAGTACACCGAGGAGACCGCCGCCCAGCC
CATGGAGACCGCGGCAAGCTTTCTAGACC

BO12153.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6846-PA 450 RpL26-RA 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:21:42
Subject Length Description Subject Range Query Range Score Percent Strand
RpL26-RB 652 CG6846-RB 55..501 17..463 2235 100 Plus
RpL26-RA 648 CG6846-RA 51..497 17..463 2235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18899320..18899766 17..463 2235 100 Plus
Blast to na_te.dros performed on 2015-02-09 09:21:38 has no hits.

BO12153.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:40 Download gff for BO12153.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL26-PA 1..450 17..467 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:08 Download gff for BO12153.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6846-PA 1..450 17..467 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:18:31 Download gff for BO12153.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL26-RA 45..500 10..467 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:48:38 Download gff for BO12153.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL26-RA 45..500 10..467 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:48:38 Download gff for BO12153.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18899314..18899769 10..467 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:18:31 Download gff for BO12153.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18892414..18892869 10..467 98   Plus

BO12153.complete Sequence

481 bp assembled on 2006-10-11

GenBank Submission: FJ632334

> BO12153.complete
GAAGTTATCAGTCGACATGAAACAGAACCCGTTCGTGTCGTCGTCGCGCA
GGAAGAACCGCAAGCGTCACTTCCAGGCTCCCTCCCACATTCGCAGGCGC
CTCATGTCCGCTCCCCTCTCCAAGGAGCTGCGCCAGAAGTACAATGTGCG
TTCCATGCCCATCCGCCGCGACGATGAGGTCCAGGTGATCCGCGGCCACT
TCAAGGGCAACCAGGTGGGCAAGGTGGTCCAGGCCTACCGCAAAAAGTTC
GTCGTCTACGTCGAGAAGATCCAGCGCGAGAACGCCAACGGCACCAACGT
CTACGTGGGCATCCATCCCAGCAAGGTGCTGATCGTCAAGCTGAAGCTCG
ACAAGGACCGCAAGGCCATCCTGGAGCGTCGCGGCAAGGGTCGTCTGGCC
GCTCTCGGCAAGGATAAGGGCAAGTACACCGAGGAGACCGCCGCCCAGCC
CATGGAGACCGCGGCAAGCTTTCTAGACCAT

BO12153.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
RpL26-RB 450 CG6846-PB 1..447 17..463 2235 100 Plus
RpL26-RA 450 CG6846-PA 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
RpL26-RB 652 CG6846-RB 55..501 17..463 2235 100 Plus
RpL26-RA 648 CG6846-RA 51..497 17..463 2235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18899320..18899766 17..463 2235 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:34:38 has no hits.

BO12153.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:27 Download gff for BO12153.complete
Subject Subject Range Query Range Percent Splice Strand
RpL26-RA 1..450 17..467 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:13 Download gff for BO12153.complete
Subject Subject Range Query Range Percent Splice Strand
RpL26-RA 75..530 10..467 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:51 Download gff for BO12153.complete
Subject Subject Range Query Range Percent Splice Strand
RpL26-RA 51..497 17..465 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:27 Download gff for BO12153.complete
Subject Subject Range Query Range Percent Splice Strand
RpL26-RA 75..530 10..467 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:25 Download gff for BO12153.complete
Subject Subject Range Query Range Percent Splice Strand
RpL26-RA 51..497 17..465 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:25 Download gff for BO12153.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18899320..18899766 17..465 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:51 Download gff for BO12153.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18892420..18892866 17..465 99   Plus

BO12153.pep Sequence

Translation from 16 to 481

> BO12153.pep
MKQNPFVSSSRRKNRKRHFQAPSHIRRRLMSAPLSKELRQKYNVRSMPIR
RDDEVQVIRGHFKGNQVGKVVQAYRKKFVVYVEKIQRENANGTNVYVGIH
PSKVLIVKLKLDKDRKAILERRGKGRLAALGKDKGKYTEETAAQPMETAA
SFLDH

BO12153.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:21
Subject Length Description Subject Range Query Range Score Percent Strand
RpL26-PB 149 CG6846-PB 1..149 1..149 756 100 Plus
RpL26-PA 149 CG6846-PA 1..149 1..149 756 100 Plus