Clone BO12154 Report

Search the DGRC for BO12154

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptTwdlP-RA
Protein status:BO12154.pep: Imported from assembly
Sequenced Size:694

Clone Sequence Records

BO12154.3prime Sequence

692 bp (691 high quality bases) assembled on 2006-04-20

> BO12154.3prime
ATGGTCTAGAAAGCTTGCGTGACGCAGGCGACTCAGGATGTTGGCGGGTA
GGTAGTTGCTCTGGGGCACCTGTTGAGGAGTAACGCGTGCTGGAGCAGCT
CCCTGGGATGCAAAGTTGATGGCATTAGCCACGCCACCGTTGATGGACTG
GCTGGAGCCGCCGAGTTGATCGTACTGCGATTGGATTGCCCGCTGGGCAT
TGGCAGCATCCTCAGGTGTCCTGTACTTGACGAAGTGCACCTCGGGCTTC
TTGTTGGCATTCTGGCGCACGGCATTGAATTTCTGGGCCAGCTCGTTGAT
ATCAGTCTGTTTGTGCAGCACATATATGGCAGTCTGCTGCTGGGCCGCCT
GTTTAGCCAGGGCCAAAACGGCATTCTCGTAGCCACGGTTCTCCGGCGAC
TTGATGAAGATGACGCGAATGTTCTTCTTGACCGAGGCAAGAGCCCTCTG
GAGAGCAGCCTTATCCTCGAAGTCGTCATCGTTGGCATAGAAGCTGTAGA
ACTCCTTGTGAACTGACGCCTGGGGAGCGGCACTATAGCTAACTGGTCCC
GCCAGTGCAGGGACTGGGGATACACCACTGCCCCCAATACTGGTTGTCGC
ACCTTGTCCGTAATTATATCCGGACAAGCTACCGGCACTTGCCGCTGCCA
CAATGCTTAGAATAATGAGGGCACGCATGTCGACTGATAACT

BO12154.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14240-PA 663 CG14240-RA 1..660 678..19 3300 100 Minus
CG6452-PA 690 CG6452-RA 442..516 243..169 225 92 Minus
CG5476-PA 930 CG5476-RA 689..723 257..223 150 97.1 Minus
CG6460-PA 744 CG6460-RA 507..540 256..223 145 97 Minus
CG6478-PA 861 CG6478-RA 627..660 256..223 145 97 Minus
CG5468-PA 867 CG5468-RA 639..672 256..223 145 97 Minus
CG5471-PA 924 CG5471-RA 615..648 256..223 145 97 Minus
CG6447-PB 840 CG6447-RB 610..642 255..223 140 96.9 Minus
CG6447-PA 858 CG6447-RA 628..660 255..223 140 96.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlP-RA 757 CG14240-RA 41..700 678..19 3300 100 Minus
TwdlO-RA 807 CG6452-RA 309..620 417..106 645 80.4 Minus
TwdlN-RA 1088 CG5476-RA 594..902 414..106 480 77.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26620665..26621324 19..678 3300 100 Plus
3R 32079331 3R 26626119..26626430 106..417 645 80.4 Plus
3R 32079331 3R 26632462..26632770 414..106 480 77 Minus
3R 32079331 3R 26624784..26625073 128..417 460 77.2 Plus
3R 32079331 3R 26619721..26620004 417..134 445 77.1 Minus
3R 32079331 3R 26622700..26622963 154..417 435 77.7 Plus
3R 32079331 3R 26628090..26628362 145..417 405 76.6 Plus
3R 32079331 3R 26630310..26630560 417..167 385 76.9 Minus
3R 32079331 3R 26634193..26634450 411..154 270 73.6 Minus
3R 32079331 3R 26640630..26640705 257..182 185 82.9 Minus
Blast to na_te.dros performed on 2015-02-10 23:03:36 has no hits.

BO12154.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:42 Download gff for BO12154.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14240-PA 1..663 18..678 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:09 Download gff for BO12154.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14240-PA 1..663 18..678 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:50:49 Download gff for BO12154.3prime
Subject Subject Range Query Range Percent Splice Strand
TwdlP-RA 30..700 19..688 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:36 Download gff for BO12154.3prime
Subject Subject Range Query Range Percent Splice Strand
TwdlP-RA 30..700 19..688 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:36 Download gff for BO12154.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26620665..26621335 19..688 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:50:49 Download gff for BO12154.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22446387..22447057 19..688 99   Plus

BO12154.5prime Sequence

692 bp (691 high quality bases) assembled on 2006-04-20

> BO12154.5prime
GAAGTTATCAGTCGACATGCGTGCCCTCATTATTCTAAGCATTGTGGCAG
CGGCAAGTGCCGGTAGCTTGTCCGGATATAATTACGGACAAGGTGCGACA
ACCAGTATTGGGGGCAGTGGTGTATCCCCAGTCCCTGCACTGGCGGGACC
AGTTAGCTATAGTGCCGCTCCCCAGGCGTCAGTTCACAAGGAGTTCTACA
GCTTCTATGCCAACGATGACGACTTCGAGGATAAGGCTGCTCTCCAGAGG
GCTCTTGCCTCGGTCAAGAAGAACATTCGCGTCATCTTCATCAAGTCGCC
GGAGAACCGTGGCTACGAGAATGCCGTTTTGGCCCTGGCTAAACAGGCGG
CCCAGCAGCAGACTGCCATATATGTGCTGCACAAACAGACTGATATCAAC
GAGCTGGCCCAGAAATTCAATGCCGTGCGCCAGAATGCCAACAAGAAGCC
CGAGGTGCACTTCGTCAAGTACAGGACACCTGAGGATGCTGCCAATGCCC
AGCGGGCAATCCAATCGCAGTACGATCAACTCGGCGGCTCCAGCCAGTCC
ATCAACGGTGGCGTGGCTAATGCCATCAACTTTGCATCCCAGGGAGCTGC
TCCAGCACGCGTTACTCCTCAACAGGTGCCCCAGAGCAACTACCTACCCG
CCAACATCCTGAGTCGCCTGCGTCACGCAAGCTTTCTAGACC

BO12154.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG14240-PA 663 CG14240-RA 1..660 17..676 3300 100 Plus
CG6452-PA 690 CG6452-RA 442..516 452..526 225 92 Plus
CG5476-PA 930 CG5476-RA 689..723 438..472 150 97.1 Plus
CG6460-PA 744 CG6460-RA 507..540 439..472 145 97 Plus
CG6478-PA 861 CG6478-RA 627..660 439..472 145 97 Plus
CG5468-PA 867 CG5468-RA 639..672 439..472 145 97 Plus
CG5471-PA 924 CG5471-RA 615..648 439..472 145 97 Plus
CG6447-PB 840 CG6447-RB 610..642 440..472 140 96.9 Plus
CG6447-PA 858 CG6447-RA 628..660 440..472 140 96.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlP-RA 757 CG14240-RA 41..700 17..676 3300 100 Plus
TwdlO-RA 807 CG6452-RA 309..620 278..589 645 80.4 Plus
TwdlN-RA 1088 CG5476-RA 594..902 281..589 480 77.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:15:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26620665..26621324 676..17 3300 100 Minus
3R 32079331 3R 26626119..26626430 589..278 645 80.4 Minus
3R 32079331 3R 26632462..26632770 281..589 480 77 Plus
3R 32079331 3R 26624784..26625073 567..278 460 77.2 Minus
3R 32079331 3R 26619721..26620004 278..561 445 77.1 Plus
3R 32079331 3R 26622700..26622963 541..278 435 77.7 Minus
3R 32079331 3R 26628090..26628362 550..278 405 76.6 Minus
3R 32079331 3R 26630310..26630560 278..528 385 76.9 Plus
3R 32079331 3R 26634193..26634450 284..541 270 73.6 Plus
3R 32079331 3R 26640630..26640705 438..513 185 82.9 Plus
Blast to na_te.dros performed on 2015-02-11 10:15:42 has no hits.

BO12154.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:43 Download gff for BO12154.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14240-PA 1..663 17..677 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:11 Download gff for BO12154.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14240-PA 1..663 17..677 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:54:21 Download gff for BO12154.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlP-RA 30..700 7..676 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:25 Download gff for BO12154.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlP-RA 30..700 7..676 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:25 Download gff for BO12154.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26620665..26621335 7..676 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:54:21 Download gff for BO12154.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22446387..22447057 7..676 99   Minus

BO12154.complete Sequence

694 bp assembled on 2010-02-09

GenBank Submission: FJ632335

> BO12154.complete
GAAGTTATCAGTCGACATGCGTGCCCTCATTATTCTAAGCATTGTGGCAG
CGGCAAGTGCCGGTAGCTTGTCCGGATATAATTACGGACAAGGTGCGACA
ACCAGTATTGGGGGCAGTGGTGTATCCCCAGTCCCTGCACTGGCGGGACC
AGTTAGCTATAGTGCCGCTCCCCAGGCGTCAGTTCACAAGGAGTTCTACA
GCTTCTATGCCAACGATGACGACTTCGAGGATAAGGCTGCTCTCCAGAGG
GCTCTTGCCTCGGTCAAGAAGAACATTCGCGTCATCTTCATCAAGTCGCC
GGAGAACCGTGGCTACGAGAATGCCGTTTTGGCCCTGGCTAAACAGGCGG
CCCAGCAGCAGACTGCCATATATGTGCTGCACAAACAGACTGATATCAAC
GAGCTGGCCCAGAAATTCAATGCCGTGCGCCAGAATGCCAACAAGAAGCC
CGAGGTGCACTTCGTCAAGTACAGGACACCTGAGGATGCTGCCAATGCCC
AGCGGGCAATCCAATCGCAGTACGATCAACTCGGCGGCTCCAGCCAGTCC
ATCAACGGTGGCGTGGCTAATGCCATCAACTTTGCATCCCAGGGAGCTGC
TCCAGCACGCGTTACTCCTCAACAGGTGCCCCAGAGCAACTACCTACCCG
CCAACATCCTGAGTCGCCTGCGTCACGCAAGCTTTCTAGACCAT

BO12154.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlP-RA 663 CG14240-PA 1..660 17..676 3300 100 Plus
TwdlO-RA 690 CG6452-PA 268..579 278..589 645 80.4 Plus
TwdlN-RA 930 CG5476-PA 532..840 281..589 480 77 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlP-RA 757 CG14240-RA 41..700 17..676 3300 100 Plus
TwdlO-RA 807 CG6452-RA 309..620 278..589 645 80.4 Plus
TwdlN-RA 1088 CG5476-RA 594..902 281..589 480 77 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26620665..26621324 676..17 3300 100 Minus
3R 32079331 3R 26626119..26626430 589..278 645 80.4 Minus
3R 32079331 3R 26632462..26632770 281..589 480 77 Plus
3R 32079331 3R 26624784..26625073 567..278 460 77.2 Minus
3R 32079331 3R 26619721..26620004 278..561 445 77.1 Plus
3R 32079331 3R 26622700..26622963 541..278 435 77.7 Minus
3R 32079331 3R 26628090..26628362 550..278 405 76.6 Minus
3R 32079331 3R 26630310..26630560 278..528 385 76.9 Plus
3R 32079331 3R 26634193..26634450 284..541 270 73.6 Plus
3R 32079331 3R 26640630..26640705 438..513 185 82.9 Plus
Blast to na_te.dros performed on 2014-11-27 10:50:43 has no hits.

BO12154.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:56 Download gff for BO12154.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlP-RA 1..663 17..677 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:20 Download gff for BO12154.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlP-RA 37..696 17..678 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:56 Download gff for BO12154.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlP-RA 41..700 17..678 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:37 Download gff for BO12154.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlP-RA 37..696 17..678 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:17 Download gff for BO12154.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlP-RA 41..700 17..678 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:17 Download gff for BO12154.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26620663..26621324 17..678 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:56 Download gff for BO12154.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22446385..22447046 17..678 99   Minus

BO12154.pep Sequence

Translation from 16 to 694

> BO12154.pep
MRALIILSIVAAASAGSLSGYNYGQGATTSIGGSGVSPVPALAGPVSYSA
APQASVHKEFYSFYANDDDFEDKAALQRALASVKKNIRVIFIKSPENRGY
ENAVLALAKQAAQQQTAIYVLHKQTDINELAQKFNAVRQNANKKPEVHFV
KYRTPEDAANAQRAIQSQYDQLGGSSQSINGGVANAINFASQGAAPARVT
PQQVPQSNYLPANILSRLRHASFLDH

BO12154.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:52:21
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlP-PA 220 CG14240-PA 1..220 1..220 1099 100 Plus
TwdlN-PA 309 CG5476-PA 107..307 18..220 641 63.2 Plus
TwdlO-PA 229 CG6452-PA 1..227 1..219 612 60 Plus
TwdlL-PB 279 CG6447-PB 69..277 8..217 604 59.7 Plus
TwdlL-PA 285 CG6447-PA 75..283 8..217 604 59.7 Plus