Clone Sequence Records
BO12154.3prime Sequence
692 bp (691 high quality bases) assembled on 2006-04-20
> BO12154.3prime
ATGGTCTAGAAAGCTTGCGTGACGCAGGCGACTCAGGATGTTGGCGGGTA
GGTAGTTGCTCTGGGGCACCTGTTGAGGAGTAACGCGTGCTGGAGCAGCT
CCCTGGGATGCAAAGTTGATGGCATTAGCCACGCCACCGTTGATGGACTG
GCTGGAGCCGCCGAGTTGATCGTACTGCGATTGGATTGCCCGCTGGGCAT
TGGCAGCATCCTCAGGTGTCCTGTACTTGACGAAGTGCACCTCGGGCTTC
TTGTTGGCATTCTGGCGCACGGCATTGAATTTCTGGGCCAGCTCGTTGAT
ATCAGTCTGTTTGTGCAGCACATATATGGCAGTCTGCTGCTGGGCCGCCT
GTTTAGCCAGGGCCAAAACGGCATTCTCGTAGCCACGGTTCTCCGGCGAC
TTGATGAAGATGACGCGAATGTTCTTCTTGACCGAGGCAAGAGCCCTCTG
GAGAGCAGCCTTATCCTCGAAGTCGTCATCGTTGGCATAGAAGCTGTAGA
ACTCCTTGTGAACTGACGCCTGGGGAGCGGCACTATAGCTAACTGGTCCC
GCCAGTGCAGGGACTGGGGATACACCACTGCCCCCAATACTGGTTGTCGC
ACCTTGTCCGTAATTATATCCGGACAAGCTACCGGCACTTGCCGCTGCCA
CAATGCTTAGAATAATGAGGGCACGCATGTCGACTGATAACT
BO12154.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14240-PA | 663 | CG14240-RA | 1..660 | 678..19 | 3300 | 100 | Minus |
CG6452-PA | 690 | CG6452-RA | 442..516 | 243..169 | 225 | 92 | Minus |
CG5476-PA | 930 | CG5476-RA | 689..723 | 257..223 | 150 | 97.1 | Minus |
CG6460-PA | 744 | CG6460-RA | 507..540 | 256..223 | 145 | 97 | Minus |
CG6478-PA | 861 | CG6478-RA | 627..660 | 256..223 | 145 | 97 | Minus |
CG5468-PA | 867 | CG5468-RA | 639..672 | 256..223 | 145 | 97 | Minus |
CG5471-PA | 924 | CG5471-RA | 615..648 | 256..223 | 145 | 97 | Minus |
CG6447-PB | 840 | CG6447-RB | 610..642 | 255..223 | 140 | 96.9 | Minus |
CG6447-PA | 858 | CG6447-RA | 628..660 | 255..223 | 140 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:03:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlP-RA | 757 | CG14240-RA | 41..700 | 678..19 | 3300 | 100 | Minus |
TwdlO-RA | 807 | CG6452-RA | 309..620 | 417..106 | 645 | 80.4 | Minus |
TwdlN-RA | 1088 | CG5476-RA | 594..902 | 414..106 | 480 | 77.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:03:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26620665..26621324 | 19..678 | 3300 | 100 | Plus |
3R | 32079331 | 3R | 26626119..26626430 | 106..417 | 645 | 80.4 | Plus |
3R | 32079331 | 3R | 26632462..26632770 | 414..106 | 480 | 77 | Minus |
3R | 32079331 | 3R | 26624784..26625073 | 128..417 | 460 | 77.2 | Plus |
3R | 32079331 | 3R | 26619721..26620004 | 417..134 | 445 | 77.1 | Minus |
3R | 32079331 | 3R | 26622700..26622963 | 154..417 | 435 | 77.7 | Plus |
3R | 32079331 | 3R | 26628090..26628362 | 145..417 | 405 | 76.6 | Plus |
3R | 32079331 | 3R | 26630310..26630560 | 417..167 | 385 | 76.9 | Minus |
3R | 32079331 | 3R | 26634193..26634450 | 411..154 | 270 | 73.6 | Minus |
3R | 32079331 | 3R | 26640630..26640705 | 257..182 | 185 | 82.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:03:36 has no hits.
BO12154.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:42 Download gff for
BO12154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14240-PA | 1..663 | 18..678 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:09 Download gff for
BO12154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14240-PA | 1..663 | 18..678 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:50:49 Download gff for
BO12154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlP-RA | 30..700 | 19..688 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:36 Download gff for
BO12154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlP-RA | 30..700 | 19..688 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:36 Download gff for
BO12154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26620665..26621335 | 19..688 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:50:49 Download gff for
BO12154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22446387..22447057 | 19..688 | 99 | | Plus |
BO12154.5prime Sequence
692 bp (691 high quality bases) assembled on 2006-04-20
> BO12154.5prime
GAAGTTATCAGTCGACATGCGTGCCCTCATTATTCTAAGCATTGTGGCAG
CGGCAAGTGCCGGTAGCTTGTCCGGATATAATTACGGACAAGGTGCGACA
ACCAGTATTGGGGGCAGTGGTGTATCCCCAGTCCCTGCACTGGCGGGACC
AGTTAGCTATAGTGCCGCTCCCCAGGCGTCAGTTCACAAGGAGTTCTACA
GCTTCTATGCCAACGATGACGACTTCGAGGATAAGGCTGCTCTCCAGAGG
GCTCTTGCCTCGGTCAAGAAGAACATTCGCGTCATCTTCATCAAGTCGCC
GGAGAACCGTGGCTACGAGAATGCCGTTTTGGCCCTGGCTAAACAGGCGG
CCCAGCAGCAGACTGCCATATATGTGCTGCACAAACAGACTGATATCAAC
GAGCTGGCCCAGAAATTCAATGCCGTGCGCCAGAATGCCAACAAGAAGCC
CGAGGTGCACTTCGTCAAGTACAGGACACCTGAGGATGCTGCCAATGCCC
AGCGGGCAATCCAATCGCAGTACGATCAACTCGGCGGCTCCAGCCAGTCC
ATCAACGGTGGCGTGGCTAATGCCATCAACTTTGCATCCCAGGGAGCTGC
TCCAGCACGCGTTACTCCTCAACAGGTGCCCCAGAGCAACTACCTACCCG
CCAACATCCTGAGTCGCCTGCGTCACGCAAGCTTTCTAGACC
BO12154.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14240-PA | 663 | CG14240-RA | 1..660 | 17..676 | 3300 | 100 | Plus |
CG6452-PA | 690 | CG6452-RA | 442..516 | 452..526 | 225 | 92 | Plus |
CG5476-PA | 930 | CG5476-RA | 689..723 | 438..472 | 150 | 97.1 | Plus |
CG6460-PA | 744 | CG6460-RA | 507..540 | 439..472 | 145 | 97 | Plus |
CG6478-PA | 861 | CG6478-RA | 627..660 | 439..472 | 145 | 97 | Plus |
CG5468-PA | 867 | CG5468-RA | 639..672 | 439..472 | 145 | 97 | Plus |
CG5471-PA | 924 | CG5471-RA | 615..648 | 439..472 | 145 | 97 | Plus |
CG6447-PB | 840 | CG6447-RB | 610..642 | 440..472 | 140 | 96.9 | Plus |
CG6447-PA | 858 | CG6447-RA | 628..660 | 440..472 | 140 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:15:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlP-RA | 757 | CG14240-RA | 41..700 | 17..676 | 3300 | 100 | Plus |
TwdlO-RA | 807 | CG6452-RA | 309..620 | 278..589 | 645 | 80.4 | Plus |
TwdlN-RA | 1088 | CG5476-RA | 594..902 | 281..589 | 480 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:15:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26620665..26621324 | 676..17 | 3300 | 100 | Minus |
3R | 32079331 | 3R | 26626119..26626430 | 589..278 | 645 | 80.4 | Minus |
3R | 32079331 | 3R | 26632462..26632770 | 281..589 | 480 | 77 | Plus |
3R | 32079331 | 3R | 26624784..26625073 | 567..278 | 460 | 77.2 | Minus |
3R | 32079331 | 3R | 26619721..26620004 | 278..561 | 445 | 77.1 | Plus |
3R | 32079331 | 3R | 26622700..26622963 | 541..278 | 435 | 77.7 | Minus |
3R | 32079331 | 3R | 26628090..26628362 | 550..278 | 405 | 76.6 | Minus |
3R | 32079331 | 3R | 26630310..26630560 | 278..528 | 385 | 76.9 | Plus |
3R | 32079331 | 3R | 26634193..26634450 | 284..541 | 270 | 73.6 | Plus |
3R | 32079331 | 3R | 26640630..26640705 | 438..513 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:15:42 has no hits.
BO12154.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:43 Download gff for
BO12154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14240-PA | 1..663 | 17..677 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:11 Download gff for
BO12154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14240-PA | 1..663 | 17..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:54:21 Download gff for
BO12154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlP-RA | 30..700 | 7..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:25 Download gff for
BO12154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlP-RA | 30..700 | 7..676 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:25 Download gff for
BO12154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26620665..26621335 | 7..676 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:54:21 Download gff for
BO12154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22446387..22447057 | 7..676 | 99 | | Minus |
BO12154.complete Sequence
694 bp assembled on 2010-02-09
GenBank Submission: FJ632335
> BO12154.complete
GAAGTTATCAGTCGACATGCGTGCCCTCATTATTCTAAGCATTGTGGCAG
CGGCAAGTGCCGGTAGCTTGTCCGGATATAATTACGGACAAGGTGCGACA
ACCAGTATTGGGGGCAGTGGTGTATCCCCAGTCCCTGCACTGGCGGGACC
AGTTAGCTATAGTGCCGCTCCCCAGGCGTCAGTTCACAAGGAGTTCTACA
GCTTCTATGCCAACGATGACGACTTCGAGGATAAGGCTGCTCTCCAGAGG
GCTCTTGCCTCGGTCAAGAAGAACATTCGCGTCATCTTCATCAAGTCGCC
GGAGAACCGTGGCTACGAGAATGCCGTTTTGGCCCTGGCTAAACAGGCGG
CCCAGCAGCAGACTGCCATATATGTGCTGCACAAACAGACTGATATCAAC
GAGCTGGCCCAGAAATTCAATGCCGTGCGCCAGAATGCCAACAAGAAGCC
CGAGGTGCACTTCGTCAAGTACAGGACACCTGAGGATGCTGCCAATGCCC
AGCGGGCAATCCAATCGCAGTACGATCAACTCGGCGGCTCCAGCCAGTCC
ATCAACGGTGGCGTGGCTAATGCCATCAACTTTGCATCCCAGGGAGCTGC
TCCAGCACGCGTTACTCCTCAACAGGTGCCCCAGAGCAACTACCTACCCG
CCAACATCCTGAGTCGCCTGCGTCACGCAAGCTTTCTAGACCAT
BO12154.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:50:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlP-RA | 663 | CG14240-PA | 1..660 | 17..676 | 3300 | 100 | Plus |
TwdlO-RA | 690 | CG6452-PA | 268..579 | 278..589 | 645 | 80.4 | Plus |
TwdlN-RA | 930 | CG5476-PA | 532..840 | 281..589 | 480 | 77 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:50:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlP-RA | 757 | CG14240-RA | 41..700 | 17..676 | 3300 | 100 | Plus |
TwdlO-RA | 807 | CG6452-RA | 309..620 | 278..589 | 645 | 80.4 | Plus |
TwdlN-RA | 1088 | CG5476-RA | 594..902 | 281..589 | 480 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:50:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26620665..26621324 | 676..17 | 3300 | 100 | Minus |
3R | 32079331 | 3R | 26626119..26626430 | 589..278 | 645 | 80.4 | Minus |
3R | 32079331 | 3R | 26632462..26632770 | 281..589 | 480 | 77 | Plus |
3R | 32079331 | 3R | 26624784..26625073 | 567..278 | 460 | 77.2 | Minus |
3R | 32079331 | 3R | 26619721..26620004 | 278..561 | 445 | 77.1 | Plus |
3R | 32079331 | 3R | 26622700..26622963 | 541..278 | 435 | 77.7 | Minus |
3R | 32079331 | 3R | 26628090..26628362 | 550..278 | 405 | 76.6 | Minus |
3R | 32079331 | 3R | 26630310..26630560 | 278..528 | 385 | 76.9 | Plus |
3R | 32079331 | 3R | 26634193..26634450 | 284..541 | 270 | 73.6 | Plus |
3R | 32079331 | 3R | 26640630..26640705 | 438..513 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:50:43 has no hits.
BO12154.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:56 Download gff for
BO12154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlP-RA | 1..663 | 17..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:20 Download gff for
BO12154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlP-RA | 37..696 | 17..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:56 Download gff for
BO12154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlP-RA | 41..700 | 17..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:37 Download gff for
BO12154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlP-RA | 37..696 | 17..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:17 Download gff for
BO12154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlP-RA | 41..700 | 17..678 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:17 Download gff for
BO12154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26620663..26621324 | 17..678 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:56 Download gff for
BO12154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22446385..22447046 | 17..678 | 99 | | Minus |
BO12154.pep Sequence
Translation from 16 to 694
> BO12154.pep
MRALIILSIVAAASAGSLSGYNYGQGATTSIGGSGVSPVPALAGPVSYSA
APQASVHKEFYSFYANDDDFEDKAALQRALASVKKNIRVIFIKSPENRGY
ENAVLALAKQAAQQQTAIYVLHKQTDINELAQKFNAVRQNANKKPEVHFV
KYRTPEDAANAQRAIQSQYDQLGGSSQSINGGVANAINFASQGAAPARVT
PQQVPQSNYLPANILSRLRHASFLDH
BO12154.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:52:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlP-PA | 220 | CG14240-PA | 1..220 | 1..220 | 1099 | 100 | Plus |
TwdlN-PA | 309 | CG5476-PA | 107..307 | 18..220 | 641 | 63.2 | Plus |
TwdlO-PA | 229 | CG6452-PA | 1..227 | 1..219 | 612 | 60 | Plus |
TwdlL-PB | 279 | CG6447-PB | 69..277 | 8..217 | 604 | 59.7 | Plus |
TwdlL-PA | 285 | CG6447-PA | 75..283 | 8..217 | 604 | 59.7 | Plus |