Clone BO12155 Report

Search the DGRC for BO12155

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptRpL35A-RA
Protein status:BO12155.pep: validated full length
Sequenced Size:505

Clone Sequence Records

BO12155.3prime Sequence

503 bp (502 high quality bases) assembled on 2006-04-20

> BO12155.3prime
ATGGTCTAGAAAGCTTGCAATCCTTGATGGGTACAGCATGATGCGGATGC
GGTGGCCCATGGCATGACCGGGCAGGTTCCTGTTGAAACGGGCACGCACA
GCGCCGGTGTTGCCGTGGATGCGGGTGACCTTGCCCCAGACAGCGCGGAC
GCGGGTCTTGCGCTCGGGATGCTGCGGCACGCACTTCTTGGTCTCGGCCT
TGTAGACATAGACGCAACGCTTCCCAACGTAGAAGGATCCGTGCTCCTTG
CGGCGGGCGCCCTCAATCTTGAGGATGGCCTGGTTCTCGTGCTGGTTCCT
CAGACCACGCTTGTAGCCGGTGAAGACGGCCTTGGCGAAGAGGCGTCCGT
GACGCTTGTACTTCTTGGCGGAAACTTTAGCCTCTGAGGCGGCGGGCTTC
TCGGCCTTAGGCGCCTTGACGGCCTTGGGAGCCTTCTGGGCCTTGGCGGC
CTTGGGCGCAGTAGTGGACTTGGCTTGTGTGTCGGCCATGTCGACTGATA
ACT

BO12155.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG2099-PA 474 RpL35A-RA 1..471 489..19 2355 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
RpL35A-RA 621 CG2099-RA 69..540 490..19 2360 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5465800..5466029 40..269 1150 100 Plus
3R 32079331 3R 5466153..5466375 268..490 1115 100 Plus
Blast to na_te.dros performed 2015-02-02 17:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 7106..7141 250..285 108 77.8 Plus

BO12155.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:44 Download gff for BO12155.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2099-PA 1..474 15..489 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:12 Download gff for BO12155.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2099-PA 1..474 15..489 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:28:25 Download gff for BO12155.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL35A-RA 66..550 7..496 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:49:22 Download gff for BO12155.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL35A-RA 66..550 7..496 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:49:22 Download gff for BO12155.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5465800..5466027 40..267 100 <- Plus
3R 5466153..5466378 268..496 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:28:25 Download gff for BO12155.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1291522..1291749 40..267 100 <- Plus
arm_3R 1291875..1292100 268..496 98   Plus

BO12155.5prime Sequence

503 bp (502 high quality bases) assembled on 2006-04-20

> BO12155.5prime
GAAGTTATCAGTCGACATGGCCGACACACAAGCCAAGTCCACTACTGCGC
CCAAGGCCGCCAAGGCCCAGAAGGCTCCCAAGGCCGTCAAGGCGCCTAAG
GCCGAGAAGCCCGCCGCCTCAGAGGCTAAAGTTTCCGCCAAGAAGTACAA
GCGTCACGGACGCCTCTTCGCCAAGGCCGTCTTCACCGGCTACAAGCGTG
GTCTGAGGAACCAGCACGAGAACCAGGCCATCCTCAAGATTGAGGGCGCC
CGCCGCAAGGAGCACGGATCCTTCTACGTTGGGAAGCGTTGCGTCTATGT
CTACAAGGCCGAGACCAAGAAGTGCGTGCCGCAGCATCCCGAGCGCAAGA
CCCGCGTCCGCGCTGTCTGGGGCAAGGTCACCCGCATCCACGGCAACACC
GGCGCTGTGCGTGCCCGTTTCAACAGGAACCTGCCCGGTCATGCCATGGG
CCACCGCATCCGCATCATGCTGTACCCATCAAGGATTGCAAGCTTTCTAG
ACC

BO12155.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG2099-PA 474 RpL35A-RA 1..471 17..487 2355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
RpL35A-RA 621 CG2099-RA 69..540 16..487 2360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5465800..5466029 466..237 1150 100 Minus
3R 32079331 3R 5466153..5466375 238..16 1115 100 Minus
Blast to na_te.dros performed 2015-02-02 11:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 7106..7141 256..221 108 77.8 Minus

BO12155.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:45 Download gff for BO12155.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2099-PA 1..474 17..491 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:14 Download gff for BO12155.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2099-PA 1..474 17..491 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:18:22 Download gff for BO12155.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL35A-RA 66..550 10..499 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:29:59 Download gff for BO12155.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL35A-RA 66..550 10..499 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:29:59 Download gff for BO12155.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5465800..5466027 239..466 100 <- Minus
3R 5466153..5466378 10..238 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:18:22 Download gff for BO12155.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1291522..1291749 239..466 100 <- Minus
arm_3R 1291875..1292100 10..238 98   Minus

BO12155.complete Sequence

505 bp assembled on 2006-10-11

GenBank Submission: FJ632336

> BO12155.complete
GAAGTTATCAGTCGACATGGCCGACACACAAGCCAAGTCCACTACTGCGC
CCAAGGCCGCCAAGGCCCAGAAGGCTCCCAAGGCCGTCAAGGCGCCTAAG
GCCGAGAAGCCCGCCGCCTCAGAGGCTAAAGTTTCCGCCAAGAAGTACAA
GCGTCACGGACGCCTCTTCGCCAAGGCCGTCTTCACCGGCTACAAGCGTG
GTCTGAGGAACCAGCACGAGAACCAGGCCATCCTCAAGATTGAGGGCGCC
CGCCGCAAGGAGCACGGATCCTTCTACGTTGGGAAGCGTTGCGTCTATGT
CTACAAGGCCGAGACCAAGAAGTGCGTGCCGCAGCATCCCGAGCGCAAGA
CCCGCGTCCGCGCTGTCTGGGGCAAGGTCACCCGCATCCACGGCAACACC
GGCGCTGTGCGTGCCCGTTTCAACAGGAACCTGCCCGGTCATGCCATGGG
CCACCGCATCCGCATCATGCTGTACCCATCAAGGATTGCAAGCTTTCTAG
ACCAT

BO12155.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:17:21
Subject Length Description Subject Range Query Range Score Percent Strand
RpL35A-RA 474 CG2099-PA 1..471 17..487 2355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
RpL35A-RA 621 CG2099-RA 69..540 16..487 2360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5465800..5466029 466..237 1150 100 Minus
3R 32079331 3R 5466153..5466375 238..16 1115 100 Minus
Blast to na_te.dros performed 2014-11-28 01:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 7106..7141 256..221 108 77.8 Minus

BO12155.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:28 Download gff for BO12155.complete
Subject Subject Range Query Range Percent Splice Strand
RpL35A-RA 1..474 17..491 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:14 Download gff for BO12155.complete
Subject Subject Range Query Range Percent Splice Strand
RpL35A-RA 62..546 10..499 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:09 Download gff for BO12155.complete
Subject Subject Range Query Range Percent Splice Strand
RpL35A-RA 70..540 17..489 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:28 Download gff for BO12155.complete
Subject Subject Range Query Range Percent Splice Strand
RpL35A-RA 62..546 10..499 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:57 Download gff for BO12155.complete
Subject Subject Range Query Range Percent Splice Strand
RpL35A-RA 70..540 17..489 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:57 Download gff for BO12155.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5465709..5465731 467..489 91 <- Minus
3R 5465800..5466027 239..466 100 <- Minus
3R 5466153..5466374 17..238 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:09 Download gff for BO12155.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1291431..1291453 467..489 91 <- Minus
arm_3R 1291522..1291749 239..466 100 <- Minus
arm_3R 1291875..1292096 17..238 100   Minus

BO12155.pep Sequence

Translation from 16 to 505

> BO12155.pep
MADTQAKSTTAPKAAKAQKAPKAVKAPKAEKPAASEAKVSAKKYKRHGRL
FAKAVFTGYKRGLRNQHENQAILKIEGARRKEHGSFYVGKRCVYVYKAET
KKCVPQHPERKTRVRAVWGKVTRIHGNTGAVRARFNRNLPGHAMGHRIRI
MLYPSRIASFLDH

BO12155.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:20
Subject Length Description Subject Range Query Range Score Percent Strand
RpL35A-PA 157 CG2099-PA 1..157 1..157 819 100 Plus