Clone Sequence Records
BO12155.3prime Sequence
503 bp (502 high quality bases) assembled on 2006-04-20
> BO12155.3prime
ATGGTCTAGAAAGCTTGCAATCCTTGATGGGTACAGCATGATGCGGATGC
GGTGGCCCATGGCATGACCGGGCAGGTTCCTGTTGAAACGGGCACGCACA
GCGCCGGTGTTGCCGTGGATGCGGGTGACCTTGCCCCAGACAGCGCGGAC
GCGGGTCTTGCGCTCGGGATGCTGCGGCACGCACTTCTTGGTCTCGGCCT
TGTAGACATAGACGCAACGCTTCCCAACGTAGAAGGATCCGTGCTCCTTG
CGGCGGGCGCCCTCAATCTTGAGGATGGCCTGGTTCTCGTGCTGGTTCCT
CAGACCACGCTTGTAGCCGGTGAAGACGGCCTTGGCGAAGAGGCGTCCGT
GACGCTTGTACTTCTTGGCGGAAACTTTAGCCTCTGAGGCGGCGGGCTTC
TCGGCCTTAGGCGCCTTGACGGCCTTGGGAGCCTTCTGGGCCTTGGCGGC
CTTGGGCGCAGTAGTGGACTTGGCTTGTGTGTCGGCCATGTCGACTGATA
ACT
BO12155.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2099-PA | 474 | RpL35A-RA | 1..471 | 489..19 | 2355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:55:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL35A-RA | 621 | CG2099-RA | 69..540 | 490..19 | 2360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:55:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5465800..5466029 | 40..269 | 1150 | 100 | Plus |
3R | 32079331 | 3R | 5466153..5466375 | 268..490 | 1115 | 100 | Plus |
Blast to na_te.dros performed 2015-02-02 17:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 7106..7141 | 250..285 | 108 | 77.8 | Plus |
BO12155.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:44 Download gff for
BO12155.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2099-PA | 1..474 | 15..489 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:12 Download gff for
BO12155.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2099-PA | 1..474 | 15..489 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:28:25 Download gff for
BO12155.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL35A-RA | 66..550 | 7..496 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:49:22 Download gff for
BO12155.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL35A-RA | 66..550 | 7..496 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:49:22 Download gff for
BO12155.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5465800..5466027 | 40..267 | 100 | <- | Plus |
3R | 5466153..5466378 | 268..496 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:28:25 Download gff for
BO12155.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1291522..1291749 | 40..267 | 100 | <- | Plus |
arm_3R | 1291875..1292100 | 268..496 | 98 | | Plus |
BO12155.5prime Sequence
503 bp (502 high quality bases) assembled on 2006-04-20
> BO12155.5prime
GAAGTTATCAGTCGACATGGCCGACACACAAGCCAAGTCCACTACTGCGC
CCAAGGCCGCCAAGGCCCAGAAGGCTCCCAAGGCCGTCAAGGCGCCTAAG
GCCGAGAAGCCCGCCGCCTCAGAGGCTAAAGTTTCCGCCAAGAAGTACAA
GCGTCACGGACGCCTCTTCGCCAAGGCCGTCTTCACCGGCTACAAGCGTG
GTCTGAGGAACCAGCACGAGAACCAGGCCATCCTCAAGATTGAGGGCGCC
CGCCGCAAGGAGCACGGATCCTTCTACGTTGGGAAGCGTTGCGTCTATGT
CTACAAGGCCGAGACCAAGAAGTGCGTGCCGCAGCATCCCGAGCGCAAGA
CCCGCGTCCGCGCTGTCTGGGGCAAGGTCACCCGCATCCACGGCAACACC
GGCGCTGTGCGTGCCCGTTTCAACAGGAACCTGCCCGGTCATGCCATGGG
CCACCGCATCCGCATCATGCTGTACCCATCAAGGATTGCAAGCTTTCTAG
ACC
BO12155.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2099-PA | 474 | RpL35A-RA | 1..471 | 17..487 | 2355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:20:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL35A-RA | 621 | CG2099-RA | 69..540 | 16..487 | 2360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:20:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5465800..5466029 | 466..237 | 1150 | 100 | Minus |
3R | 32079331 | 3R | 5466153..5466375 | 238..16 | 1115 | 100 | Minus |
Blast to na_te.dros performed 2015-02-02 11:20:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 7106..7141 | 256..221 | 108 | 77.8 | Minus |
BO12155.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:45 Download gff for
BO12155.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2099-PA | 1..474 | 17..491 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:14 Download gff for
BO12155.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2099-PA | 1..474 | 17..491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:18:22 Download gff for
BO12155.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL35A-RA | 66..550 | 10..499 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:29:59 Download gff for
BO12155.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL35A-RA | 66..550 | 10..499 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:29:59 Download gff for
BO12155.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5465800..5466027 | 239..466 | 100 | <- | Minus |
3R | 5466153..5466378 | 10..238 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:18:22 Download gff for
BO12155.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1291522..1291749 | 239..466 | 100 | <- | Minus |
arm_3R | 1291875..1292100 | 10..238 | 98 | | Minus |
BO12155.complete Sequence
505 bp assembled on 2006-10-11
GenBank Submission: FJ632336
> BO12155.complete
GAAGTTATCAGTCGACATGGCCGACACACAAGCCAAGTCCACTACTGCGC
CCAAGGCCGCCAAGGCCCAGAAGGCTCCCAAGGCCGTCAAGGCGCCTAAG
GCCGAGAAGCCCGCCGCCTCAGAGGCTAAAGTTTCCGCCAAGAAGTACAA
GCGTCACGGACGCCTCTTCGCCAAGGCCGTCTTCACCGGCTACAAGCGTG
GTCTGAGGAACCAGCACGAGAACCAGGCCATCCTCAAGATTGAGGGCGCC
CGCCGCAAGGAGCACGGATCCTTCTACGTTGGGAAGCGTTGCGTCTATGT
CTACAAGGCCGAGACCAAGAAGTGCGTGCCGCAGCATCCCGAGCGCAAGA
CCCGCGTCCGCGCTGTCTGGGGCAAGGTCACCCGCATCCACGGCAACACC
GGCGCTGTGCGTGCCCGTTTCAACAGGAACCTGCCCGGTCATGCCATGGG
CCACCGCATCCGCATCATGCTGTACCCATCAAGGATTGCAAGCTTTCTAG
ACCAT
BO12155.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:17:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL35A-RA | 474 | CG2099-PA | 1..471 | 17..487 | 2355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL35A-RA | 621 | CG2099-RA | 69..540 | 16..487 | 2360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5465800..5466029 | 466..237 | 1150 | 100 | Minus |
3R | 32079331 | 3R | 5466153..5466375 | 238..16 | 1115 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:17:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 7106..7141 | 256..221 | 108 | 77.8 | Minus |
BO12155.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:28 Download gff for
BO12155.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL35A-RA | 1..474 | 17..491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:14 Download gff for
BO12155.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL35A-RA | 62..546 | 10..499 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:09 Download gff for
BO12155.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL35A-RA | 70..540 | 17..489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:28 Download gff for
BO12155.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL35A-RA | 62..546 | 10..499 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:57 Download gff for
BO12155.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL35A-RA | 70..540 | 17..489 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:57 Download gff for
BO12155.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5465709..5465731 | 467..489 | 91 | <- | Minus |
3R | 5465800..5466027 | 239..466 | 100 | <- | Minus |
3R | 5466153..5466374 | 17..238 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:09 Download gff for
BO12155.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1291431..1291453 | 467..489 | 91 | <- | Minus |
arm_3R | 1291522..1291749 | 239..466 | 100 | <- | Minus |
arm_3R | 1291875..1292096 | 17..238 | 100 | | Minus |
BO12155.pep Sequence
Translation from 16 to 505
> BO12155.pep
MADTQAKSTTAPKAAKAQKAPKAVKAPKAEKPAASEAKVSAKKYKRHGRL
FAKAVFTGYKRGLRNQHENQAILKIEGARRKEHGSFYVGKRCVYVYKAET
KKCVPQHPERKTRVRAVWGKVTRIHGNTGAVRARFNRNLPGHAMGHRIRI
MLYPSRIASFLDH
BO12155.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL35A-PA | 157 | CG2099-PA | 1..157 | 1..157 | 819 | 100 | Plus |