Clone BO12156 Report

Search the DGRC for BO12156

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:56
Vector:pDNR-Dual
Associated Gene/Transcriptbeat-IIa-RA
Protein status:BO12156.pep: validated full length
Sequenced Size:1327

Clone Sequence Records

BO12156.3prime Sequence

907 bp (800 high quality bases) assembled on 2006-04-20

> BO12156.3prime
ATGGTCTAGAAAGCTTGCGGCCAGACGCAGACTTTCTGTCCGTGATCCTG
GCCAGGCCAGTTGCTGTCTGGACGCCTTGGAGACGCTGCAGCTGGACACA
AGAGCTGGACGCTCCTTGGGCTCCCTTCGCTCCTTGGAATGTTCCATCGA
ATGTCCGGTCTGTGACTGTGGATCCTGGCTGCTGGCATCGCAGGGCTCAA
ATGCAGCCTCAATTAGCCGGAATAAACTAGCCAGCATGGCCATTATAAGC
GGCGCCATGTAGACGCCGGGCAGGAGTCGCGATGCCGCCGATGCCGAGGT
CGAGAAATACGAGCTGAAAAAGTTCTTCAAGCTCGTGTCGGATGAGAGCG
TGACACGTGCCGGTACCGGATCCTTTTGCGGAGTGCCCAGCTCGATTTCC
TTGTACTCCTGGTATAGATCCCCGATTTGCGCCGAGCAGCGCAAAAGTAA
TCCGCCAGGATTCGAATTCGGGGCATAAACCGGTCCTCCATGCCCGTAAA
CCGAGTTCAGCCCGTAAACGTTATTGTAGATGGCCGGATTCACGCTGGAA
AAGTGAATGCCCTGCAATTGCATCTTCAGCGAGATCCGCGTGGCAATCAG
ATTATCAATGGTGCGAATGTACTCGGTGTCCACATGGGTTATCACCATGT
TGTTGATGGTAAATGTGAGTTCTGCCCGCGGACGCGACGGCGGTGTGCTG
CAATTGGCCCGCAGGACATCGCCGGGCTCGTAGCGTGTGTGTTCCGTGAA
AACCTGCGGACGCTTCTCGGGCAGTTCAACAACTTGCATGGTGTCCACTG
CGGGGGCGGTTGAGAAGAGCGGGGCATCGGCGGTCACTTCGCATTGAAAG
TTGCCAGAGAGACCGAATCCACGTTGCGCAACAGCACCTGGGTGGCATTG
GAGCTGC

BO12156.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG14334-PA 1296 beat-IIa-RA 442..1293 870..19 4185 99.6 Minus
CG4135-PA 1224 beat-IIb-RA 998..1073 434..359 205 90.7 Minus
CG14334-PA 1296 beat-IIa-RA 404..442 907..869 195 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
beat-IIa-RB 2829 CG14334-RB 1155..2044 907..19 4380 99.6 Minus
beat-IIa-RA 2984 CG14334-RA 1310..2199 907..19 4380 99.6 Minus
beat-IIb-RC 2442 CG4135-RC 1709..1802 434..341 290 87.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17320789..17321124 19..354 1680 100 Plus
3R 32079331 3R 17321216..17321505 354..643 1450 100 Plus
3R 32079331 3R 17327233..17327367 643..777 675 100 Plus
3R 32079331 3R 17331018..17331149 777..907 565 97 Plus
3R 32079331 3R 17233237..17233312 359..434 275 90.8 Plus
Blast to na_te.dros performed on 2015-02-12 03:56:50 has no hits.

BO12156.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:46 Download gff for BO12156.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14334-PA 404..1296 18..907 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:15 Download gff for BO12156.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14334-PA 404..1296 18..907 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:57:19 Download gff for BO12156.3prime
Subject Subject Range Query Range Percent Splice Strand
beat-IIa-RA 1310..2204 13..907 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:22 Download gff for BO12156.3prime
Subject Subject Range Query Range Percent Splice Strand
beat-IIa-RA 1310..2204 13..907 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:22 Download gff for BO12156.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17320784..17321123 13..353 99 <- Plus
3R 17321216..17321504 354..642 100 <- Plus
3R 17327233..17327366 643..776 100 <- Plus
3R 17331018..17331149 777..907 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:57:19 Download gff for BO12156.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13146506..13146845 13..353 99 <- Plus
arm_3R 13146938..13147226 354..642 100 <- Plus
arm_3R 13152955..13153088 643..776 100 <- Plus
arm_3R 13156740..13156871 777..907 96   Plus

BO12156.5prime Sequence

901 bp (790 high quality bases) assembled on 2006-04-20

> BO12156.5prime
GAAGTTATCAGTCGACATGCTGGAGTTGCAACTTTGCGGAGATTTGTCAG
CCGGCGACTTGAGCGAAATTCCCAAAATGGGACACCAAAGGGCCACGGAT
ACGGGACATCGCCAGATCCGGAGCCACAGAAAATCCGACTGCCGGACTTT
TCCAGCCAGATGCCTCCTGCTGCTACTCGGCGTTCTACTTCTGAGCATGG
AGCTCGTCGAATGCGCGCTGCGCAATGTCAATTTAATAATCGAACCACCG
GCAGTGCGACGGGGCCAGCATGTGGTGCTGCGGTGCATGTACGACCTGGA
CGGGGCTCCACTGTACTCGGCTAAGTTCTACCGTGGCCAGCTGGAGTTCT
ACCGCTACACGCCCGGCGAGTTTCCCAATACGAAAGTGTTTCCATTCCCC
GGCATTCACGTGGATGTAAGCAGCTCCAATGCCACCCAGGTGCTGTTGCG
CAACGTGGGATTCGGTCTCTCTGGCAACTTTTCATGCGAAGTGACCGCCG
ATGCCCCGCTCTTCTCAACCGCCACCGCAGTGGACACCATGCAAGTTGTT
GAACTGCCCGAGAAGCGTCCGCAGGTTTTCACGGAACACACACGCTACGA
GCCCGGCGATGTCCTGCGGGCCAATTGCAGCACACCGCCGTCGCGTCCGC
GGGCAGAACTCACATTTACCATCAACAACATGGTGATAACCCATGTGGAC
ACCGAGTACATTCGCACCATTGATAATCTGATTGCCACGCGGATCTCGCT
GAAGATGCAATTGCAGGGCATTCACTTTTCCAGCGTGAATCCGGCCATCT
ACAATAACGTTTACGGGCTGAACTCGGTTTACGGGCATGGAGGACCGGTT
TATGCCCCGAATTCGAATCCTGGCGGATTACTTTTGCGCTGCTCGGCGCA
A

BO12156.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG14334-PA 1296 beat-IIa-RA 1..885 17..901 4425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
beat-IIa-RB 2829 CG14334-RB 747..1636 12..901 4435 99.9 Plus
beat-IIa-RA 2984 CG14334-RA 902..1791 12..901 4435 99.9 Plus
beat-IIb-RC 2442 CG4135-RC 1036..1418 248..630 420 75.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17332490..17332710 420..200 1105 100 Minus
3R 32079331 3R 17321289..17321505 901..685 1085 100 Minus
3R 32079331 3R 17345399..17345587 200..12 930 99.5 Minus
3R 32079331 3R 17331018..17331153 551..416 680 100 Minus
3R 32079331 3R 17327233..17327367 685..551 675 100 Minus
3R 32079331 3R 17239703..17239860 405..248 220 75.9 Minus
Blast to na_te.dros performed on 2015-02-13 08:48:32 has no hits.

BO12156.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:47 Download gff for BO12156.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14334-PA 1..883 17..899 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:16 Download gff for BO12156.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14334-PA 1..883 17..899 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:42:20 Download gff for BO12156.5prime
Subject Subject Range Query Range Percent Splice Strand
beat-IIa-RA 895..1789 5..899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:27:29 Download gff for BO12156.5prime
Subject Subject Range Query Range Percent Splice Strand
beat-IIa-RA 895..1789 5..899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:27:29 Download gff for BO12156.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17327233..17327366 552..685 100 <- Minus
3R 17331018..17331153 416..551 100 <- Minus
3R 17332495..17332709 201..415 100 <- Minus
3R 17345399..17345594 5..200 97   Minus
3R 17321291..17321504 686..899 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:42:20 Download gff for BO12156.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13147013..13147226 686..899 100 <- Minus
arm_3R 13152955..13153088 552..685 100 <- Minus
arm_3R 13156740..13156875 416..551 100 <- Minus
arm_3R 13158217..13158431 201..415 100 <- Minus
arm_3R 13171121..13171316 5..200 97   Minus

BO12156.complete Sequence

1327 bp assembled on 2006-10-11

GenBank Submission: FJ632337

> BO12156.complete
GAAGTTATCAGTCGACATGCTGGAGTTGCAACTTTGCGGAGATTTGTCAG
CCGGCGACTTGAGCGAAATTCCCAAAATGGGACACCAAAGGGCCACGGAT
ACGGGACATCGCCAGATCCGGAGCCACAGAAAATCCGACTGCCGGACTTT
TCCAGCCAGATGCCTCCTGCTGCTACTCGGCGTTCTACTTCTGAGCATGG
AGCTCGTCGAATGCGCGCTGCGCAATGTCAATTTAATAATCGAACCACCG
GCAGTGCGACGGGGCCAGCATGTGGTGCTGCGGTGCATGTACGACCTGGA
CGGGGCTCCACTGTACTCGGCTAAGTTCTACCGTGGCCAGCTGGAGTTCT
ACCGCTACACGCCCGGCGAGTTTCCCAATACGAAAGTGTTTCCATTCCCC
GGCATTCACGTGGATGTAAGCAGCTCCAATGCCACCCAGGTGCTGTTGCG
CAACGTGGGATTCGGTCTCTCTGGCAACTTTTCATGCGAAGTGACCGCCG
ATGCCCCGCTCTTCTCAACCGCCACCGCAGTGGACACCATGCAAGTTGTT
GAACTGCCCGAGAAGCGTCCGCAGGTTTTCACGGAACACACACGCTACGA
GCCCGGCGATGTCCTGCGGGCCAATTGCAGCACACCGCCGTCGCGTCCGC
GGGCAGAACTCACATTTACCATCAACAACATGGTGATAACCCATGTGGAC
ACCGAGTACATTCGCACCATTGATAATCTGATTGCCACGCGGATCTCGCT
GAAGATGCAATTGCAGGGCATTCACTTTTCCAGCGTGAATCCGGCCATCT
ACAATAACGTTTACGGGCTGAACTCGGTTTACGGGCATGGAGGACCGGTT
TATGCCCCGAATTCGAATCCTGGCGGATTACTTTTGCGCTGCTCGGCGCA
AATCGGGGATCTATACCAGGAGTACAAGGAAATCGAGCTGGGCACTCCGC
AAAAGGATCCGGTACCGGCACGTGTCACGCTCTCATCCGACACGAGCTTG
AAGAACTTTTTCAGCTCGTATTTCTCGACCTCGGCATCGGCGGCATCGCG
ACTCCTGCCCGGCGTCTACATGGCGCCGCTTATAATGGCCATGCTGGCTA
GTTTATTCCGGCTAATTGAGGCTGCATTTGAGCCCTGCGATGCCAGCAGC
CAGGATCCACAGTCACAGACCGGACATTCGATGGAACATTCCAAGGAGCG
AAGGGAGCCCAAGGAGCGTCCAGCTCTTGTGTCCAGCTGCAGCGTCTCCA
AGGCGTCCAGACAGCAACTGGCCTGGCCAGGATCACGGACAGAAAGTCTG
CGTCTGGCCGCAAGCTTTCTAGACCAT

BO12156.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
beat-IIa-RB 1296 CG14334-PB 1..1293 17..1309 6465 100 Plus
beat-IIa-RA 1296 CG14334-PA 1..1293 17..1309 6465 100 Plus
beat-IIb-RC 1215 CG4135-PC 316..698 248..630 415 73.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
beat-IIa-RB 2829 CG14334-RB 747..2044 12..1309 6475 99.9 Plus
beat-IIa-RA 2984 CG14334-RA 902..2199 12..1309 6475 99.9 Plus
beat-IIb-RC 2442 CG4135-RC 1036..1418 248..630 415 73.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17320789..17321124 1309..974 1680 100 Minus
3R 32079331 3R 17321216..17321505 974..685 1450 100 Minus
3R 32079331 3R 17332490..17332710 420..200 1105 100 Minus
3R 32079331 3R 17345399..17345587 200..12 930 99.5 Minus
3R 32079331 3R 17331018..17331153 551..416 680 100 Minus
3R 32079331 3R 17327233..17327367 685..551 675 100 Minus
3R 32079331 3R 17233237..17233312 969..894 275 90.8 Minus
3R 32079331 3R 17239703..17239860 405..248 220 75.9 Minus
Blast to na_te.dros performed on 2014-11-28 08:04:20 has no hits.

BO12156.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:15 Download gff for BO12156.complete
Subject Subject Range Query Range Percent Splice Strand
beat-IIa-RA 1..1296 17..1310 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:48:07 Download gff for BO12156.complete
Subject Subject Range Query Range Percent Splice Strand
beat-IIa-RA 905..2197 17..1311 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:42 Download gff for BO12156.complete
Subject Subject Range Query Range Percent Splice Strand
beat-IIa-RA 907..2199 17..1311 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:15 Download gff for BO12156.complete
Subject Subject Range Query Range Percent Splice Strand
beat-IIa-RA 893..2202 5..1315 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:10:07 Download gff for BO12156.complete
Subject Subject Range Query Range Percent Splice Strand
beat-IIa-RA 907..2199 17..1311 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:10:07 Download gff for BO12156.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17332495..17332709 201..415 100 <- Minus
3R 17345399..17345582 17..200 100   Minus
3R 17331018..17331153 416..551 100 <- Minus
3R 17320787..17321123 975..1311 99 <- Minus
3R 17321216..17321504 686..974 100 <- Minus
3R 17327233..17327366 552..685 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:42 Download gff for BO12156.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13158217..13158431 201..415 100 <- Minus
arm_3R 13171121..13171304 17..200 100   Minus
arm_3R 13146509..13146845 975..1311 99 <- Minus
arm_3R 13146938..13147226 686..974 100 <- Minus
arm_3R 13152955..13153088 552..685 100 <- Minus
arm_3R 13156740..13156875 416..551 100 <- Minus

BO12156.pep Sequence

Translation from 16 to 1327

> BO12156.pep
MLELQLCGDLSAGDLSEIPKMGHQRATDTGHRQIRSHRKSDCRTFPARCL
LLLLGVLLLSMELVECALRNVNLIIEPPAVRRGQHVVLRCMYDLDGAPLY
SAKFYRGQLEFYRYTPGEFPNTKVFPFPGIHVDVSSSNATQVLLRNVGFG
LSGNFSCEVTADAPLFSTATAVDTMQVVELPEKRPQVFTEHTRYEPGDVL
RANCSTPPSRPRAELTFTINNMVITHVDTEYIRTIDNLIATRISLKMQLQ
GIHFSSVNPAIYNNVYGLNSVYGHGGPVYAPNSNPGGLLLRCSAQIGDLY
QEYKEIELGTPQKDPVPARVTLSSDTSLKNFFSSYFSTSASAASRLLPGV
YMAPLIMAMLASLFRLIEAAFEPCDASSQDPQSQTGHSMEHSKERREPKE
RPALVSSCSVSKASRQQLAWPGSRTESLRLAASFLDH

BO12156.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
beat-IIa-PB 431 CG14334-PB 1..431 1..431 2234 100 Plus
beat-IIa-PA 431 CG14334-PA 1..431 1..431 2234 100 Plus
beat-IIb-PC 404 CG4135-PC 84..381 56..344 964 64.2 Plus
beat-IIb-PA 407 CG4135-PA 84..384 56..344 950 63.6 Plus
beat-Ia-PA 427 CG4846-PA 3..238 45..305 420 38.9 Plus