Clone Sequence Records
BO12156.3prime Sequence
907 bp (800 high quality bases) assembled on 2006-04-20
> BO12156.3prime
ATGGTCTAGAAAGCTTGCGGCCAGACGCAGACTTTCTGTCCGTGATCCTG
GCCAGGCCAGTTGCTGTCTGGACGCCTTGGAGACGCTGCAGCTGGACACA
AGAGCTGGACGCTCCTTGGGCTCCCTTCGCTCCTTGGAATGTTCCATCGA
ATGTCCGGTCTGTGACTGTGGATCCTGGCTGCTGGCATCGCAGGGCTCAA
ATGCAGCCTCAATTAGCCGGAATAAACTAGCCAGCATGGCCATTATAAGC
GGCGCCATGTAGACGCCGGGCAGGAGTCGCGATGCCGCCGATGCCGAGGT
CGAGAAATACGAGCTGAAAAAGTTCTTCAAGCTCGTGTCGGATGAGAGCG
TGACACGTGCCGGTACCGGATCCTTTTGCGGAGTGCCCAGCTCGATTTCC
TTGTACTCCTGGTATAGATCCCCGATTTGCGCCGAGCAGCGCAAAAGTAA
TCCGCCAGGATTCGAATTCGGGGCATAAACCGGTCCTCCATGCCCGTAAA
CCGAGTTCAGCCCGTAAACGTTATTGTAGATGGCCGGATTCACGCTGGAA
AAGTGAATGCCCTGCAATTGCATCTTCAGCGAGATCCGCGTGGCAATCAG
ATTATCAATGGTGCGAATGTACTCGGTGTCCACATGGGTTATCACCATGT
TGTTGATGGTAAATGTGAGTTCTGCCCGCGGACGCGACGGCGGTGTGCTG
CAATTGGCCCGCAGGACATCGCCGGGCTCGTAGCGTGTGTGTTCCGTGAA
AACCTGCGGACGCTTCTCGGGCAGTTCAACAACTTGCATGGTGTCCACTG
CGGGGGCGGTTGAGAAGAGCGGGGCATCGGCGGTCACTTCGCATTGAAAG
TTGCCAGAGAGACCGAATCCACGTTGCGCAACAGCACCTGGGTGGCATTG
GAGCTGC
BO12156.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14334-PA | 1296 | beat-IIa-RA | 442..1293 | 870..19 | 4185 | 99.6 | Minus |
CG4135-PA | 1224 | beat-IIb-RA | 998..1073 | 434..359 | 205 | 90.7 | Minus |
CG14334-PA | 1296 | beat-IIa-RA | 404..442 | 907..869 | 195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:56:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beat-IIa-RB | 2829 | CG14334-RB | 1155..2044 | 907..19 | 4380 | 99.6 | Minus |
beat-IIa-RA | 2984 | CG14334-RA | 1310..2199 | 907..19 | 4380 | 99.6 | Minus |
beat-IIb-RC | 2442 | CG4135-RC | 1709..1802 | 434..341 | 290 | 87.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:56:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17320789..17321124 | 19..354 | 1680 | 100 | Plus |
3R | 32079331 | 3R | 17321216..17321505 | 354..643 | 1450 | 100 | Plus |
3R | 32079331 | 3R | 17327233..17327367 | 643..777 | 675 | 100 | Plus |
3R | 32079331 | 3R | 17331018..17331149 | 777..907 | 565 | 97 | Plus |
3R | 32079331 | 3R | 17233237..17233312 | 359..434 | 275 | 90.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:56:50 has no hits.
BO12156.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:46 Download gff for
BO12156.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14334-PA | 404..1296 | 18..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:15 Download gff for
BO12156.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14334-PA | 404..1296 | 18..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:57:19 Download gff for
BO12156.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIa-RA | 1310..2204 | 13..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:22 Download gff for
BO12156.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIa-RA | 1310..2204 | 13..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:22 Download gff for
BO12156.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17320784..17321123 | 13..353 | 99 | <- | Plus |
3R | 17321216..17321504 | 354..642 | 100 | <- | Plus |
3R | 17327233..17327366 | 643..776 | 100 | <- | Plus |
3R | 17331018..17331149 | 777..907 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:57:19 Download gff for
BO12156.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13146506..13146845 | 13..353 | 99 | <- | Plus |
arm_3R | 13146938..13147226 | 354..642 | 100 | <- | Plus |
arm_3R | 13152955..13153088 | 643..776 | 100 | <- | Plus |
arm_3R | 13156740..13156871 | 777..907 | 96 | | Plus |
BO12156.5prime Sequence
901 bp (790 high quality bases) assembled on 2006-04-20
> BO12156.5prime
GAAGTTATCAGTCGACATGCTGGAGTTGCAACTTTGCGGAGATTTGTCAG
CCGGCGACTTGAGCGAAATTCCCAAAATGGGACACCAAAGGGCCACGGAT
ACGGGACATCGCCAGATCCGGAGCCACAGAAAATCCGACTGCCGGACTTT
TCCAGCCAGATGCCTCCTGCTGCTACTCGGCGTTCTACTTCTGAGCATGG
AGCTCGTCGAATGCGCGCTGCGCAATGTCAATTTAATAATCGAACCACCG
GCAGTGCGACGGGGCCAGCATGTGGTGCTGCGGTGCATGTACGACCTGGA
CGGGGCTCCACTGTACTCGGCTAAGTTCTACCGTGGCCAGCTGGAGTTCT
ACCGCTACACGCCCGGCGAGTTTCCCAATACGAAAGTGTTTCCATTCCCC
GGCATTCACGTGGATGTAAGCAGCTCCAATGCCACCCAGGTGCTGTTGCG
CAACGTGGGATTCGGTCTCTCTGGCAACTTTTCATGCGAAGTGACCGCCG
ATGCCCCGCTCTTCTCAACCGCCACCGCAGTGGACACCATGCAAGTTGTT
GAACTGCCCGAGAAGCGTCCGCAGGTTTTCACGGAACACACACGCTACGA
GCCCGGCGATGTCCTGCGGGCCAATTGCAGCACACCGCCGTCGCGTCCGC
GGGCAGAACTCACATTTACCATCAACAACATGGTGATAACCCATGTGGAC
ACCGAGTACATTCGCACCATTGATAATCTGATTGCCACGCGGATCTCGCT
GAAGATGCAATTGCAGGGCATTCACTTTTCCAGCGTGAATCCGGCCATCT
ACAATAACGTTTACGGGCTGAACTCGGTTTACGGGCATGGAGGACCGGTT
TATGCCCCGAATTCGAATCCTGGCGGATTACTTTTGCGCTGCTCGGCGCA
A
BO12156.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14334-PA | 1296 | beat-IIa-RA | 1..885 | 17..901 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:48:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beat-IIa-RB | 2829 | CG14334-RB | 747..1636 | 12..901 | 4435 | 99.9 | Plus |
beat-IIa-RA | 2984 | CG14334-RA | 902..1791 | 12..901 | 4435 | 99.9 | Plus |
beat-IIb-RC | 2442 | CG4135-RC | 1036..1418 | 248..630 | 420 | 75.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:48:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17332490..17332710 | 420..200 | 1105 | 100 | Minus |
3R | 32079331 | 3R | 17321289..17321505 | 901..685 | 1085 | 100 | Minus |
3R | 32079331 | 3R | 17345399..17345587 | 200..12 | 930 | 99.5 | Minus |
3R | 32079331 | 3R | 17331018..17331153 | 551..416 | 680 | 100 | Minus |
3R | 32079331 | 3R | 17327233..17327367 | 685..551 | 675 | 100 | Minus |
3R | 32079331 | 3R | 17239703..17239860 | 405..248 | 220 | 75.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:48:32 has no hits.
BO12156.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:47 Download gff for
BO12156.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14334-PA | 1..883 | 17..899 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:16 Download gff for
BO12156.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14334-PA | 1..883 | 17..899 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:42:20 Download gff for
BO12156.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIa-RA | 895..1789 | 5..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:27:29 Download gff for
BO12156.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIa-RA | 895..1789 | 5..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:27:29 Download gff for
BO12156.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17327233..17327366 | 552..685 | 100 | <- | Minus |
3R | 17331018..17331153 | 416..551 | 100 | <- | Minus |
3R | 17332495..17332709 | 201..415 | 100 | <- | Minus |
3R | 17345399..17345594 | 5..200 | 97 | | Minus |
3R | 17321291..17321504 | 686..899 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:42:20 Download gff for
BO12156.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13147013..13147226 | 686..899 | 100 | <- | Minus |
arm_3R | 13152955..13153088 | 552..685 | 100 | <- | Minus |
arm_3R | 13156740..13156875 | 416..551 | 100 | <- | Minus |
arm_3R | 13158217..13158431 | 201..415 | 100 | <- | Minus |
arm_3R | 13171121..13171316 | 5..200 | 97 | | Minus |
BO12156.complete Sequence
1327 bp assembled on 2006-10-11
GenBank Submission: FJ632337
> BO12156.complete
GAAGTTATCAGTCGACATGCTGGAGTTGCAACTTTGCGGAGATTTGTCAG
CCGGCGACTTGAGCGAAATTCCCAAAATGGGACACCAAAGGGCCACGGAT
ACGGGACATCGCCAGATCCGGAGCCACAGAAAATCCGACTGCCGGACTTT
TCCAGCCAGATGCCTCCTGCTGCTACTCGGCGTTCTACTTCTGAGCATGG
AGCTCGTCGAATGCGCGCTGCGCAATGTCAATTTAATAATCGAACCACCG
GCAGTGCGACGGGGCCAGCATGTGGTGCTGCGGTGCATGTACGACCTGGA
CGGGGCTCCACTGTACTCGGCTAAGTTCTACCGTGGCCAGCTGGAGTTCT
ACCGCTACACGCCCGGCGAGTTTCCCAATACGAAAGTGTTTCCATTCCCC
GGCATTCACGTGGATGTAAGCAGCTCCAATGCCACCCAGGTGCTGTTGCG
CAACGTGGGATTCGGTCTCTCTGGCAACTTTTCATGCGAAGTGACCGCCG
ATGCCCCGCTCTTCTCAACCGCCACCGCAGTGGACACCATGCAAGTTGTT
GAACTGCCCGAGAAGCGTCCGCAGGTTTTCACGGAACACACACGCTACGA
GCCCGGCGATGTCCTGCGGGCCAATTGCAGCACACCGCCGTCGCGTCCGC
GGGCAGAACTCACATTTACCATCAACAACATGGTGATAACCCATGTGGAC
ACCGAGTACATTCGCACCATTGATAATCTGATTGCCACGCGGATCTCGCT
GAAGATGCAATTGCAGGGCATTCACTTTTCCAGCGTGAATCCGGCCATCT
ACAATAACGTTTACGGGCTGAACTCGGTTTACGGGCATGGAGGACCGGTT
TATGCCCCGAATTCGAATCCTGGCGGATTACTTTTGCGCTGCTCGGCGCA
AATCGGGGATCTATACCAGGAGTACAAGGAAATCGAGCTGGGCACTCCGC
AAAAGGATCCGGTACCGGCACGTGTCACGCTCTCATCCGACACGAGCTTG
AAGAACTTTTTCAGCTCGTATTTCTCGACCTCGGCATCGGCGGCATCGCG
ACTCCTGCCCGGCGTCTACATGGCGCCGCTTATAATGGCCATGCTGGCTA
GTTTATTCCGGCTAATTGAGGCTGCATTTGAGCCCTGCGATGCCAGCAGC
CAGGATCCACAGTCACAGACCGGACATTCGATGGAACATTCCAAGGAGCG
AAGGGAGCCCAAGGAGCGTCCAGCTCTTGTGTCCAGCTGCAGCGTCTCCA
AGGCGTCCAGACAGCAACTGGCCTGGCCAGGATCACGGACAGAAAGTCTG
CGTCTGGCCGCAAGCTTTCTAGACCAT
BO12156.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:04:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beat-IIa-RB | 1296 | CG14334-PB | 1..1293 | 17..1309 | 6465 | 100 | Plus |
beat-IIa-RA | 1296 | CG14334-PA | 1..1293 | 17..1309 | 6465 | 100 | Plus |
beat-IIb-RC | 1215 | CG4135-PC | 316..698 | 248..630 | 415 | 73.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:04:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beat-IIa-RB | 2829 | CG14334-RB | 747..2044 | 12..1309 | 6475 | 99.9 | Plus |
beat-IIa-RA | 2984 | CG14334-RA | 902..2199 | 12..1309 | 6475 | 99.9 | Plus |
beat-IIb-RC | 2442 | CG4135-RC | 1036..1418 | 248..630 | 415 | 73.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:04:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17320789..17321124 | 1309..974 | 1680 | 100 | Minus |
3R | 32079331 | 3R | 17321216..17321505 | 974..685 | 1450 | 100 | Minus |
3R | 32079331 | 3R | 17332490..17332710 | 420..200 | 1105 | 100 | Minus |
3R | 32079331 | 3R | 17345399..17345587 | 200..12 | 930 | 99.5 | Minus |
3R | 32079331 | 3R | 17331018..17331153 | 551..416 | 680 | 100 | Minus |
3R | 32079331 | 3R | 17327233..17327367 | 685..551 | 675 | 100 | Minus |
3R | 32079331 | 3R | 17233237..17233312 | 969..894 | 275 | 90.8 | Minus |
3R | 32079331 | 3R | 17239703..17239860 | 405..248 | 220 | 75.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:04:20 has no hits.
BO12156.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:15 Download gff for
BO12156.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIa-RA | 1..1296 | 17..1310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:48:07 Download gff for
BO12156.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIa-RA | 905..2197 | 17..1311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:42 Download gff for
BO12156.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIa-RA | 907..2199 | 17..1311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:15 Download gff for
BO12156.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIa-RA | 893..2202 | 5..1315 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:10:07 Download gff for
BO12156.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIa-RA | 907..2199 | 17..1311 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:10:07 Download gff for
BO12156.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17332495..17332709 | 201..415 | 100 | <- | Minus |
3R | 17345399..17345582 | 17..200 | 100 | | Minus |
3R | 17331018..17331153 | 416..551 | 100 | <- | Minus |
3R | 17320787..17321123 | 975..1311 | 99 | <- | Minus |
3R | 17321216..17321504 | 686..974 | 100 | <- | Minus |
3R | 17327233..17327366 | 552..685 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:42 Download gff for
BO12156.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13158217..13158431 | 201..415 | 100 | <- | Minus |
arm_3R | 13171121..13171304 | 17..200 | 100 | | Minus |
arm_3R | 13146509..13146845 | 975..1311 | 99 | <- | Minus |
arm_3R | 13146938..13147226 | 686..974 | 100 | <- | Minus |
arm_3R | 13152955..13153088 | 552..685 | 100 | <- | Minus |
arm_3R | 13156740..13156875 | 416..551 | 100 | <- | Minus |
BO12156.pep Sequence
Translation from 16 to 1327
> BO12156.pep
MLELQLCGDLSAGDLSEIPKMGHQRATDTGHRQIRSHRKSDCRTFPARCL
LLLLGVLLLSMELVECALRNVNLIIEPPAVRRGQHVVLRCMYDLDGAPLY
SAKFYRGQLEFYRYTPGEFPNTKVFPFPGIHVDVSSSNATQVLLRNVGFG
LSGNFSCEVTADAPLFSTATAVDTMQVVELPEKRPQVFTEHTRYEPGDVL
RANCSTPPSRPRAELTFTINNMVITHVDTEYIRTIDNLIATRISLKMQLQ
GIHFSSVNPAIYNNVYGLNSVYGHGGPVYAPNSNPGGLLLRCSAQIGDLY
QEYKEIELGTPQKDPVPARVTLSSDTSLKNFFSSYFSTSASAASRLLPGV
YMAPLIMAMLASLFRLIEAAFEPCDASSQDPQSQTGHSMEHSKERREPKE
RPALVSSCSVSKASRQQLAWPGSRTESLRLAASFLDH
BO12156.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beat-IIa-PB | 431 | CG14334-PB | 1..431 | 1..431 | 2234 | 100 | Plus |
beat-IIa-PA | 431 | CG14334-PA | 1..431 | 1..431 | 2234 | 100 | Plus |
beat-IIb-PC | 404 | CG4135-PC | 84..381 | 56..344 | 964 | 64.2 | Plus |
beat-IIb-PA | 407 | CG4135-PA | 84..384 | 56..344 | 950 | 63.6 | Plus |
beat-Ia-PA | 427 | CG4846-PA | 3..238 | 45..305 | 420 | 38.9 | Plus |