Clone Sequence Records
BO12158.3prime Sequence
722 bp (721 high quality bases) assembled on 2006-04-20
> BO12158.3prime
ATGGTCTAGAAAGCTTGCACGATTCGACTTGGCCACGCGCTCCAACTCGT
CCTTCTTCTTGATGGCGTAGGAGTTGGAGGATCCCTTGGCGGCGTTGATC
AGCTCATCAGCCAGACACTCGGCCACCGTCTTGATGTTGCGGAAGGCAGC
CTCACGTGCTCCAGTGCAGATTAGCCAAATTGCCTGGTTGACACGACGCA
AGGGCGACACATCGACTGCCTGGCGGCGCACAGTGCCGGCGCGTCCGATT
CGCGTGGAGTCCTCGCGCGGACCGGAATTGACGATGGCGTTGACGGTGAC
CTGAAGCGGATTCTCCGAGGTTAGCAGATGGATGATCTCGAAGGCGTGCT
TGACGATGCGGCAGGCGAGGAGCTTCTTGCCGTTGCTGCGCCCCTTCATC
ATCAGCCCGCTGGTGAGGCGCTCCACGATGGGGCATTGGGCCTTGCGGAA
TCTCTTGGCCGCATAGCGTCCGGCGGAGTGCGGCAGGTAGCGGGCGAACT
TCTCCTTTACGGCAATGTAGTCCTGCAGCGAGATGTCGCTGATGGAGATG
TCGTCGCAGGCCCAGCGCCCGAAAAGCTTGATTTCCGGCCACTCGGTGAC
CTCCTGGGCCGGCATTGTGGTAACGACATCGTCAGCCCAGTCCTCCTGCT
CCTGCGGTATAACCTGGCTCGCCTCCTGGCTGCTGGACTCCACCACTTCC
TCGGACATGTCGACTGATAACT
BO12158.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7014-PA | 693 | RpS5b-RA | 1..690 | 708..19 | 3450 | 100 | Minus |
CG8922-PA | 687 | RpS5a-RA | 580..677 | 123..26 | 290 | 91.8 | Minus |
CG8922-PA | 687 | RpS5a-RA | 196..284 | 507..419 | 170 | 87.6 | Minus |
CG8922-PA | 687 | RpS5a-RA | 337..380 | 366..323 | 145 | 93.1 | Minus |
CG8922-PA | 687 | RpS5a-RA | 478..521 | 225..182 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:58:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS5b-RA | 874 | CG7014-RA | 83..776 | 712..19 | 3455 | 99.9 | Minus |
RpS5b-RB | 951 | CG7014-RB | 83..612 | 712..183 | 2635 | 99.8 | Minus |
RpS5a-RD | 809 | CG8922-RD | 121..691 | 589..19 | 1475 | 83.9 | Minus |
RpS5b-RB | 951 | CG7014-RB | 687..853 | 185..19 | 835 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:58:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14900948..14901481 | 179..712 | 2640 | 99.6 | Plus |
3R | 32079331 | 3R | 14900530..14900697 | 19..186 | 840 | 100 | Plus |
X | 23542271 | X | 17146796..17147086 | 299..589 | 720 | 83.2 | Plus |
X | 23542271 | X | 17144617..17144718 | 84..185 | 300 | 86.3 | Plus |
X | 23542271 | X | 17145015..17145126 | 183..294 | 290 | 83.9 | Plus |
X | 23542271 | X | 17143706..17143773 | 19..86 | 235 | 89.7 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:58:06 has no hits.
BO12158.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:50 Download gff for
BO12158.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5b-PA | 1..693 | 15..708 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:20 Download gff for
BO12158.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7014-PA | 1..693 | 15..708 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:06:06 Download gff for
BO12158.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5b-RA | 104..807 | 12..717 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:45:30 Download gff for
BO12158.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5b-RA | 79..782 | 12..717 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:45:30 Download gff for
BO12158.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14900524..14900694 | 12..183 | 98 | <- | Plus |
3R | 14900953..14901485 | 184..717 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:06:06 Download gff for
BO12158.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10726246..10726416 | 12..183 | 98 | <- | Plus |
arm_3R | 10726675..10727207 | 184..717 | 99 | | Plus |
BO12158.5prime Sequence
722 bp (721 high quality bases) assembled on 2006-04-20
> BO12158.5prime
GAAGTTATCAGTCGACATGTCCGAGGAAGTGGTGGAGTCCAGCAGCCAGG
AGGCGAGCCAGGTTATACCGCAGGAGCAGGAGGACTGGGCTGACGATGTC
GTTACCACAATGCCGGCCCAGGAGGTCACCGAGTGGCCGGAAATCAAGCT
TTTCGGGCGCTGGGCCTGCGACGACATCTCCATCAGCGACATCTCGCTGC
AGGACTACATTGCCGTAAAGGAGAAGTTCGCCCGCTACCTGCCGCACTCC
GCCGGACGCTATGCGGCCAAGAGATTCCGCAAGGCCCAATGCCCCATCGT
GGAGCGCCTCACCAGCGGGCTGATGATGAAGGGGCGCAGCAACGGCAAGA
AGCTCCTCGCCTGCCGCATCGTCAAGCACGCCTTCGAGATCATCCATCTG
CTAACCTCGGAGAATCCGCTTCAGGTCACCGTCAACGCCATCGTCAATTC
CGGTCCGCGCGAGGACTCCACGCGAATCGGACGCGCCGGCACTGTGCGCC
GCCAGGCAGTCGATGTGTCGCCCTTGCGTCGTGTCAACCAGGCAATTTGG
CTAATCTGCACTGGAGCACGTGAGGCTGCCTTCCGCAACATCAAGACGGT
GGCCGAGTGTCTGGCTGATGAGCTGATCAACGCCGCCAAGGGATCCTCCA
ACTCCTACGCCATCAAGAAGAAGGACGAGTTGGAGCGCGTGGCCAAGTCG
AATCGTGCAAGCTTTCTAGACC
BO12158.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7014-PA | 693 | RpS5b-RA | 1..690 | 17..706 | 3450 | 100 | Plus |
CG8922-PA | 687 | RpS5a-RA | 580..677 | 602..699 | 290 | 91.8 | Plus |
CG8922-PA | 687 | RpS5a-RA | 196..284 | 218..306 | 170 | 87.6 | Plus |
CG8922-PA | 687 | RpS5a-RA | 337..380 | 359..402 | 145 | 93.1 | Plus |
CG8922-PA | 687 | RpS5a-RA | 478..521 | 500..543 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:54:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS5b-RA | 874 | CG7014-RA | 83..776 | 13..706 | 3455 | 99.9 | Plus |
RpS5b-RB | 951 | CG7014-RB | 83..612 | 13..542 | 2635 | 99.8 | Plus |
RpS5a-RD | 809 | CG8922-RD | 121..691 | 136..706 | 1475 | 83.9 | Plus |
RpS5b-RB | 951 | CG7014-RB | 687..853 | 540..706 | 835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:54:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14900948..14901481 | 546..13 | 2640 | 99.6 | Minus |
3R | 32079331 | 3R | 14900530..14900697 | 706..539 | 840 | 100 | Minus |
X | 23542271 | X | 17146796..17147086 | 426..136 | 720 | 83.2 | Minus |
X | 23542271 | X | 17144617..17144718 | 641..540 | 300 | 86.3 | Minus |
X | 23542271 | X | 17145015..17145126 | 542..431 | 290 | 83.9 | Minus |
X | 23542271 | X | 17143706..17143773 | 706..639 | 235 | 89.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:54:55 has no hits.
BO12158.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:51 Download gff for
BO12158.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5b-PA | 1..693 | 17..710 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:21 Download gff for
BO12158.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7014-PA | 1..693 | 17..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:03:39 Download gff for
BO12158.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5b-RA | 104..807 | 8..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:06 Download gff for
BO12158.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5b-RA | 79..782 | 8..713 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:06 Download gff for
BO12158.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14900524..14900694 | 542..713 | 98 | <- | Minus |
3R | 14900953..14901485 | 8..541 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:03:39 Download gff for
BO12158.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10726246..10726416 | 542..713 | 98 | <- | Minus |
arm_3R | 10726675..10727207 | 8..541 | 99 | | Minus |
BO12158.complete Sequence
724 bp assembled on 2006-10-11
GenBank Submission: FJ632338
> BO12158.complete
GAAGTTATCAGTCGACATGTCCGAGGAAGTGGTGGAGTCCAGCAGCCAGG
AGGCGAGCCAGGTTATACCGCAGGAGCAGGAGGACTGGGCTGACGATGTC
GTTACCACAATGCCGGCCCAGGAGGTCACCGAGTGGCCGGAAATCAAGCT
TTTCGGGCGCTGGGCCTGCGACGACATCTCCATCAGCGACATCTCGCTGC
AGGACTACATTGCCGTAAAGGAGAAGTTCGCCCGCTACCTGCCGCACTCC
GCCGGACGCTATGCGGCCAAGAGATTCCGCAAGGCCCAATGCCCCATCGT
GGAGCGCCTCACCAGCGGGCTGATGATGAAGGGGCGCAGCAACGGCAAGA
AGCTCCTCGCCTGCCGCATCGTCAAGCACGCCTTCGAGATCATCCATCTG
CTAACCTCGGAGAATCCGCTTCAGGTCACCGTCAACGCCATCGTCAATTC
CGGTCCGCGCGAGGACTCCACGCGAATCGGACGCGCCGGCACTGTGCGCC
GCCAGGCAGTCGATGTGTCGCCCTTGCGTCGTGTCAACCAGGCAATTTGG
CTAATCTGCACTGGAGCACGTGAGGCTGCCTTCCGCAACATCAAGACGGT
GGCCGAGTGTCTGGCTGATGAGCTGATCAACGCCGCCAAGGGATCCTCCA
ACTCCTACGCCATCAAGAAGAAGGACGAGTTGGAGCGCGTGGCCAAGTCG
AATCGTGCAAGCTTTCTAGACCAT
BO12158.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:16:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS5b-RA | 693 | CG7014-PA | 1..690 | 17..706 | 3450 | 100 | Plus |
RpS5b-RB | 543 | CG7014-PB | 1..526 | 17..542 | 2630 | 100 | Plus |
RpS5a-RD | 687 | CG8922-PD | 114..684 | 136..706 | 1475 | 83.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:16:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS5b-RA | 874 | CG7014-RA | 83..776 | 13..706 | 3455 | 99.9 | Plus |
RpS5b-RB | 951 | CG7014-RB | 83..612 | 13..542 | 2635 | 99.8 | Plus |
RpS5a-RD | 809 | CG8922-RD | 121..691 | 136..706 | 1475 | 83.9 | Plus |
RpS5b-RB | 951 | CG7014-RB | 687..853 | 540..706 | 835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:16:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14900948..14901481 | 546..13 | 2640 | 99.6 | Minus |
3R | 32079331 | 3R | 14900530..14900697 | 706..539 | 840 | 100 | Minus |
X | 23542271 | X | 17146796..17147086 | 426..136 | 720 | 83.2 | Minus |
X | 23542271 | X | 17144617..17144718 | 641..540 | 300 | 86.3 | Minus |
X | 23542271 | X | 17145015..17145126 | 542..431 | 290 | 83.9 | Minus |
X | 23542271 | X | 17143706..17143773 | 706..639 | 235 | 89.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:16:37 has no hits.
BO12158.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:16 Download gff for
BO12158.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5b-RA | 1..693 | 17..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:56 Download gff for
BO12158.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5b-RA | 104..807 | 8..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:35 Download gff for
BO12158.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5b-RA | 112..801 | 17..708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:16 Download gff for
BO12158.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5b-RA | 104..807 | 8..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:34 Download gff for
BO12158.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5b-RA | 87..776 | 17..708 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:34 Download gff for
BO12158.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14900528..14900694 | 542..708 | 98 | <- | Minus |
3R | 14900953..14901477 | 17..541 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:35 Download gff for
BO12158.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10726250..10726416 | 542..708 | 98 | <- | Minus |
arm_3R | 10726675..10727199 | 17..541 | 100 | | Minus |
BO12158.pep Sequence
Translation from 16 to 724
> BO12158.pep
MSEEVVESSSQEASQVIPQEQEDWADDVVTTMPAQEVTEWPEIKLFGRWA
CDDISISDISLQDYIAVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTS
GLMMKGRSNGKKLLACRIVKHAFEIIHLLTSENPLQVTVNAIVNSGPRED
STRIGRAGTVRRQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLA
DELINAAKGSSNSYAIKKKDELERVAKSNRASFLDH
BO12158.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS5b-PA | 230 | CG7014-PA | 1..230 | 1..230 | 1168 | 100 | Plus |
RpS5a-PD | 228 | CG8922-PD | 4..228 | 1..230 | 929 | 79.1 | Plus |
RpS5a-PC | 228 | CG8922-PC | 4..228 | 1..230 | 929 | 79.1 | Plus |
RpS5a-PB | 228 | CG8922-PB | 4..228 | 1..230 | 929 | 79.1 | Plus |
RpS5a-PA | 228 | CG8922-PA | 4..228 | 1..230 | 929 | 79.1 | Plus |