Clone BO12158 Report

Search the DGRC for BO12158

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptRpS5b-RA
Protein status:BO12158.pep: validated full length
Sequenced Size:724

Clone Sequence Records

BO12158.3prime Sequence

722 bp (721 high quality bases) assembled on 2006-04-20

> BO12158.3prime
ATGGTCTAGAAAGCTTGCACGATTCGACTTGGCCACGCGCTCCAACTCGT
CCTTCTTCTTGATGGCGTAGGAGTTGGAGGATCCCTTGGCGGCGTTGATC
AGCTCATCAGCCAGACACTCGGCCACCGTCTTGATGTTGCGGAAGGCAGC
CTCACGTGCTCCAGTGCAGATTAGCCAAATTGCCTGGTTGACACGACGCA
AGGGCGACACATCGACTGCCTGGCGGCGCACAGTGCCGGCGCGTCCGATT
CGCGTGGAGTCCTCGCGCGGACCGGAATTGACGATGGCGTTGACGGTGAC
CTGAAGCGGATTCTCCGAGGTTAGCAGATGGATGATCTCGAAGGCGTGCT
TGACGATGCGGCAGGCGAGGAGCTTCTTGCCGTTGCTGCGCCCCTTCATC
ATCAGCCCGCTGGTGAGGCGCTCCACGATGGGGCATTGGGCCTTGCGGAA
TCTCTTGGCCGCATAGCGTCCGGCGGAGTGCGGCAGGTAGCGGGCGAACT
TCTCCTTTACGGCAATGTAGTCCTGCAGCGAGATGTCGCTGATGGAGATG
TCGTCGCAGGCCCAGCGCCCGAAAAGCTTGATTTCCGGCCACTCGGTGAC
CTCCTGGGCCGGCATTGTGGTAACGACATCGTCAGCCCAGTCCTCCTGCT
CCTGCGGTATAACCTGGCTCGCCTCCTGGCTGCTGGACTCCACCACTTCC
TCGGACATGTCGACTGATAACT

BO12158.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7014-PA 693 RpS5b-RA 1..690 708..19 3450 100 Minus
CG8922-PA 687 RpS5a-RA 580..677 123..26 290 91.8 Minus
CG8922-PA 687 RpS5a-RA 196..284 507..419 170 87.6 Minus
CG8922-PA 687 RpS5a-RA 337..380 366..323 145 93.1 Minus
CG8922-PA 687 RpS5a-RA 478..521 225..182 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
RpS5b-RA 874 CG7014-RA 83..776 712..19 3455 99.9 Minus
RpS5b-RB 951 CG7014-RB 83..612 712..183 2635 99.8 Minus
RpS5a-RD 809 CG8922-RD 121..691 589..19 1475 83.9 Minus
RpS5b-RB 951 CG7014-RB 687..853 185..19 835 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14900948..14901481 179..712 2640 99.6 Plus
3R 32079331 3R 14900530..14900697 19..186 840 100 Plus
X 23542271 X 17146796..17147086 299..589 720 83.2 Plus
X 23542271 X 17144617..17144718 84..185 300 86.3 Plus
X 23542271 X 17145015..17145126 183..294 290 83.9 Plus
X 23542271 X 17143706..17143773 19..86 235 89.7 Plus
Blast to na_te.dros performed on 2015-02-06 12:58:06 has no hits.

BO12158.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:50 Download gff for BO12158.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS5b-PA 1..693 15..708 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:20 Download gff for BO12158.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7014-PA 1..693 15..708 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:06:06 Download gff for BO12158.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS5b-RA 104..807 12..717 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:45:30 Download gff for BO12158.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS5b-RA 79..782 12..717 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:45:30 Download gff for BO12158.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14900524..14900694 12..183 98 <- Plus
3R 14900953..14901485 184..717 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:06:06 Download gff for BO12158.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10726246..10726416 12..183 98 <- Plus
arm_3R 10726675..10727207 184..717 99   Plus

BO12158.5prime Sequence

722 bp (721 high quality bases) assembled on 2006-04-20

> BO12158.5prime
GAAGTTATCAGTCGACATGTCCGAGGAAGTGGTGGAGTCCAGCAGCCAGG
AGGCGAGCCAGGTTATACCGCAGGAGCAGGAGGACTGGGCTGACGATGTC
GTTACCACAATGCCGGCCCAGGAGGTCACCGAGTGGCCGGAAATCAAGCT
TTTCGGGCGCTGGGCCTGCGACGACATCTCCATCAGCGACATCTCGCTGC
AGGACTACATTGCCGTAAAGGAGAAGTTCGCCCGCTACCTGCCGCACTCC
GCCGGACGCTATGCGGCCAAGAGATTCCGCAAGGCCCAATGCCCCATCGT
GGAGCGCCTCACCAGCGGGCTGATGATGAAGGGGCGCAGCAACGGCAAGA
AGCTCCTCGCCTGCCGCATCGTCAAGCACGCCTTCGAGATCATCCATCTG
CTAACCTCGGAGAATCCGCTTCAGGTCACCGTCAACGCCATCGTCAATTC
CGGTCCGCGCGAGGACTCCACGCGAATCGGACGCGCCGGCACTGTGCGCC
GCCAGGCAGTCGATGTGTCGCCCTTGCGTCGTGTCAACCAGGCAATTTGG
CTAATCTGCACTGGAGCACGTGAGGCTGCCTTCCGCAACATCAAGACGGT
GGCCGAGTGTCTGGCTGATGAGCTGATCAACGCCGCCAAGGGATCCTCCA
ACTCCTACGCCATCAAGAAGAAGGACGAGTTGGAGCGCGTGGCCAAGTCG
AATCGTGCAAGCTTTCTAGACC

BO12158.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7014-PA 693 RpS5b-RA 1..690 17..706 3450 100 Plus
CG8922-PA 687 RpS5a-RA 580..677 602..699 290 91.8 Plus
CG8922-PA 687 RpS5a-RA 196..284 218..306 170 87.6 Plus
CG8922-PA 687 RpS5a-RA 337..380 359..402 145 93.1 Plus
CG8922-PA 687 RpS5a-RA 478..521 500..543 145 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
RpS5b-RA 874 CG7014-RA 83..776 13..706 3455 99.9 Plus
RpS5b-RB 951 CG7014-RB 83..612 13..542 2635 99.8 Plus
RpS5a-RD 809 CG8922-RD 121..691 136..706 1475 83.9 Plus
RpS5b-RB 951 CG7014-RB 687..853 540..706 835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14900948..14901481 546..13 2640 99.6 Minus
3R 32079331 3R 14900530..14900697 706..539 840 100 Minus
X 23542271 X 17146796..17147086 426..136 720 83.2 Minus
X 23542271 X 17144617..17144718 641..540 300 86.3 Minus
X 23542271 X 17145015..17145126 542..431 290 83.9 Minus
X 23542271 X 17143706..17143773 706..639 235 89.7 Minus
Blast to na_te.dros performed on 2015-02-10 22:54:55 has no hits.

BO12158.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:27:51 Download gff for BO12158.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS5b-PA 1..693 17..710 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:21 Download gff for BO12158.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7014-PA 1..693 17..710 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:03:39 Download gff for BO12158.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS5b-RA 104..807 8..713 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:06 Download gff for BO12158.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS5b-RA 79..782 8..713 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:06 Download gff for BO12158.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14900524..14900694 542..713 98 <- Minus
3R 14900953..14901485 8..541 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:03:39 Download gff for BO12158.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10726246..10726416 542..713 98 <- Minus
arm_3R 10726675..10727207 8..541 99   Minus

BO12158.complete Sequence

724 bp assembled on 2006-10-11

GenBank Submission: FJ632338

> BO12158.complete
GAAGTTATCAGTCGACATGTCCGAGGAAGTGGTGGAGTCCAGCAGCCAGG
AGGCGAGCCAGGTTATACCGCAGGAGCAGGAGGACTGGGCTGACGATGTC
GTTACCACAATGCCGGCCCAGGAGGTCACCGAGTGGCCGGAAATCAAGCT
TTTCGGGCGCTGGGCCTGCGACGACATCTCCATCAGCGACATCTCGCTGC
AGGACTACATTGCCGTAAAGGAGAAGTTCGCCCGCTACCTGCCGCACTCC
GCCGGACGCTATGCGGCCAAGAGATTCCGCAAGGCCCAATGCCCCATCGT
GGAGCGCCTCACCAGCGGGCTGATGATGAAGGGGCGCAGCAACGGCAAGA
AGCTCCTCGCCTGCCGCATCGTCAAGCACGCCTTCGAGATCATCCATCTG
CTAACCTCGGAGAATCCGCTTCAGGTCACCGTCAACGCCATCGTCAATTC
CGGTCCGCGCGAGGACTCCACGCGAATCGGACGCGCCGGCACTGTGCGCC
GCCAGGCAGTCGATGTGTCGCCCTTGCGTCGTGTCAACCAGGCAATTTGG
CTAATCTGCACTGGAGCACGTGAGGCTGCCTTCCGCAACATCAAGACGGT
GGCCGAGTGTCTGGCTGATGAGCTGATCAACGCCGCCAAGGGATCCTCCA
ACTCCTACGCCATCAAGAAGAAGGACGAGTTGGAGCGCGTGGCCAAGTCG
AATCGTGCAAGCTTTCTAGACCAT

BO12158.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
RpS5b-RA 693 CG7014-PA 1..690 17..706 3450 100 Plus
RpS5b-RB 543 CG7014-PB 1..526 17..542 2630 100 Plus
RpS5a-RD 687 CG8922-PD 114..684 136..706 1475 83.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
RpS5b-RA 874 CG7014-RA 83..776 13..706 3455 99.9 Plus
RpS5b-RB 951 CG7014-RB 83..612 13..542 2635 99.8 Plus
RpS5a-RD 809 CG8922-RD 121..691 136..706 1475 83.9 Plus
RpS5b-RB 951 CG7014-RB 687..853 540..706 835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14900948..14901481 546..13 2640 99.6 Minus
3R 32079331 3R 14900530..14900697 706..539 840 100 Minus
X 23542271 X 17146796..17147086 426..136 720 83.2 Minus
X 23542271 X 17144617..17144718 641..540 300 86.3 Minus
X 23542271 X 17145015..17145126 542..431 290 83.9 Minus
X 23542271 X 17143706..17143773 706..639 235 89.7 Minus
Blast to na_te.dros performed on 2014-11-27 10:16:37 has no hits.

BO12158.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:16 Download gff for BO12158.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5b-RA 1..693 17..710 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:56 Download gff for BO12158.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5b-RA 104..807 8..713 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:35 Download gff for BO12158.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5b-RA 112..801 17..708 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:16 Download gff for BO12158.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5b-RA 104..807 8..713 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:34 Download gff for BO12158.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5b-RA 87..776 17..708 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:34 Download gff for BO12158.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14900528..14900694 542..708 98 <- Minus
3R 14900953..14901477 17..541 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:35 Download gff for BO12158.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10726250..10726416 542..708 98 <- Minus
arm_3R 10726675..10727199 17..541 100   Minus

BO12158.pep Sequence

Translation from 16 to 724

> BO12158.pep
MSEEVVESSSQEASQVIPQEQEDWADDVVTTMPAQEVTEWPEIKLFGRWA
CDDISISDISLQDYIAVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTS
GLMMKGRSNGKKLLACRIVKHAFEIIHLLTSENPLQVTVNAIVNSGPRED
STRIGRAGTVRRQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLA
DELINAAKGSSNSYAIKKKDELERVAKSNRASFLDH

BO12158.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:47
Subject Length Description Subject Range Query Range Score Percent Strand
RpS5b-PA 230 CG7014-PA 1..230 1..230 1168 100 Plus
RpS5a-PD 228 CG8922-PD 4..228 1..230 929 79.1 Plus
RpS5a-PC 228 CG8922-PC 4..228 1..230 929 79.1 Plus
RpS5a-PB 228 CG8922-PB 4..228 1..230 929 79.1 Plus
RpS5a-PA 228 CG8922-PA 4..228 1..230 929 79.1 Plus