Clone Sequence Records
BO12162.3prime Sequence
479 bp (478 high quality bases) assembled on 2006-04-20
> BO12162.3prime
ATGGTCTAGAAAGCTTGCGGCGCTCAGCAAGCACACACCGCCGGCCTTCT
TGATCTTGTCCTCAGCCTTCTTAGAGAAGTACTTGGCCTTCACGATGACG
GGGCGGGCGGGCAGGTGACCACGGCCCAGCAGCTTGTAGTAGCCGAATTT
AACCAAGTCGATGACGGGAGCCTTGGTGCTCTTCTCCTTCTCCAGCTCGG
CGAACTTCTCGGCTCCGACCAGGGACCAGAGCTTGTCCAGGTTGATCTCG
GGCCTGAACTTGTGCTGGCGACGCAGATGGAAGTTCCTCATGCCCACCTT
GCCGAAGTAACCAGGATGGTATTTGTCGAAGTTGATGCGGTGATGGTGCA
TGCCACCAGCGTTACCGCGACCTCCGGGATGCTTGCGGTGCTTGCCGATA
CGGCCGTGACCGTGGCTCACATGACCACGCAGCTTCCTGGTCTTCTTCCG
CTTGATATTCGACATGTCGACTGATAACT
BO12162.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15442-PA | 450 | RpL27A-RA | 1..447 | 465..19 | 2235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:32:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL27A-RD | 613 | CG15442-RD | 54..500 | 465..19 | 2235 | 100 | Minus |
RpL27A-RA | 586 | CG15442-RA | 27..473 | 465..19 | 2235 | 100 | Minus |
RpL27A-RC | 633 | CG15442-RC | 74..520 | 465..19 | 2235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:32:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4457739..4458058 | 144..463 | 1600 | 100 | Plus |
2L | 23513712 | 2L | 4457384..4457509 | 19..144 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 12:32:14 has no hits.
BO12162.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:00 Download gff for
BO12162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15442-PA | 1..450 | 15..465 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:32 Download gff for
BO12162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15442-PA | 1..450 | 15..465 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 00:01:12 Download gff for
BO12162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27A-RC | 74..526 | 11..465 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:05:44 Download gff for
BO12162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27A-RC | 74..526 | 11..465 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:05:44 Download gff for
BO12162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4457378..4457509 | 11..144 | 97 | <- | Plus |
2L | 4457740..4458067 | 145..474 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 00:01:12 Download gff for
BO12162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4457378..4457509 | 11..144 | 97 | <- | Plus |
arm_2L | 4457740..4458067 | 145..474 | 98 | | Plus |
BO12162.5prime Sequence
479 bp (478 high quality bases) assembled on 2006-04-20
> BO12162.5prime
GAAGTTATCAGTCGACATGTCGAATATCAAGCGGAAGAAGACCAGGAAGC
TGCGTGGTCATGTGAGCCACGGTCACGGCCGTATCGGCAAGCACCGCAAG
CATCCCGGAGGTCGCGGTAACGCTGGTGGCATGCACCATCACCGCATCAA
CTTCGACAAATACCATCCTGGTTACTTCGGCAAGGTGGGCATGAGGAACT
TCCATCTGCGTCGCCAGCACAAGTTCAGGCCCGAGATCAACCTGGACAAG
CTCTGGTCCCTGGTCGGAGCCGAGAAGTTCGCCGAGCTGGAGAAGGAGAA
GAGCACCAAGGCTCCCGTCATCGACTTGGTTAAATTCGGCTACTACAAGC
TGCTGGGCCGTGGTCACCTGCCCGCCCGCCCCGTCATCGTGAAGGCCAAG
TACTTCTCTAAGAAGGCTGAGGACAAGATCAAGAAGGCCGGCGGTGTGTG
CTTGCTGAGCGCCGCAAGCTTTCTAGACC
BO12162.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15442-PA | 450 | RpL27A-RA | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:12:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL27A-RD | 613 | CG15442-RD | 54..500 | 17..463 | 2235 | 100 | Plus |
RpL27A-RA | 586 | CG15442-RA | 27..473 | 17..463 | 2235 | 100 | Plus |
RpL27A-RC | 633 | CG15442-RC | 74..520 | 17..463 | 2235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:12:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4457739..4458058 | 338..19 | 1600 | 100 | Minus |
2L | 23513712 | 2L | 4457384..4457509 | 463..338 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:12:42 has no hits.
BO12162.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:00 Download gff for
BO12162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15442-PA | 1..450 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:33 Download gff for
BO12162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15442-PA | 1..450 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:53:32 Download gff for
BO12162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27A-RC | 74..526 | 17..471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:19:42 Download gff for
BO12162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27A-RC | 74..526 | 17..471 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:42 Download gff for
BO12162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4457378..4457509 | 338..471 | 97 | <- | Minus |
2L | 4457740..4458067 | 8..337 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:53:32 Download gff for
BO12162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4457378..4457509 | 338..471 | 97 | <- | Minus |
arm_2L | 4457740..4458067 | 8..337 | 98 | | Minus |
BO12162.complete Sequence
481 bp assembled on 2006-10-11
GenBank Submission: FJ632339
> BO12162.complete
GAAGTTATCAGTCGACATGTCGAATATCAAGCGGAAGAAGACCAGGAAGC
TGCGTGGTCATGTGAGCCACGGTCACGGCCGTATCGGCAAGCACCGCAAG
CATCCCGGAGGTCGCGGTAACGCTGGTGGCATGCACCATCACCGCATCAA
CTTCGACAAATACCATCCTGGTTACTTCGGCAAGGTGGGCATGAGGAACT
TCCATCTGCGTCGCCAGCACAAGTTCAGGCCCGAGATCAACCTGGACAAG
CTCTGGTCCCTGGTCGGAGCCGAGAAGTTCGCCGAGCTGGAGAAGGAGAA
GAGCACCAAGGCTCCCGTCATCGACTTGGTTAAATTCGGCTACTACAAGC
TGCTGGGCCGTGGTCACCTGCCCGCCCGCCCCGTCATCGTGAAGGCCAAG
TACTTCTCTAAGAAGGCTGAGGACAAGATCAAGAAGGCCGGCGGTGTGTG
CTTGCTGAGCGCCGCAAGCTTTCTAGACCAT
BO12162.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:27:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL27A-RD | 450 | CG15442-PD | 1..447 | 17..463 | 2235 | 100 | Plus |
RpL27A-RA | 450 | CG15442-PA | 1..447 | 17..463 | 2235 | 100 | Plus |
RpL27A-RC | 450 | CG15442-PC | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL27A-RD | 613 | CG15442-RD | 54..500 | 17..463 | 2235 | 100 | Plus |
RpL27A-RA | 586 | CG15442-RA | 27..473 | 17..463 | 2235 | 100 | Plus |
RpL27A-RC | 633 | CG15442-RC | 74..520 | 17..463 | 2235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4457739..4458058 | 338..19 | 1600 | 100 | Minus |
2L | 23513712 | 2L | 4457384..4457509 | 463..338 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:27:47 has no hits.
BO12162.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:38 Download gff for
BO12162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27A-RA | 1..450 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:52 Download gff for
BO12162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27A-RA | 74..526 | 17..471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:48 Download gff for
BO12162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27A-RC | 74..520 | 17..465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:38 Download gff for
BO12162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27A-RA | 74..526 | 17..471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:10 Download gff for
BO12162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27A-RC | 74..520 | 17..465 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:10 Download gff for
BO12162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4457382..4457509 | 338..465 | 98 | <- | Minus |
2L | 4457740..4458059 | 17..337 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:48 Download gff for
BO12162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4457382..4457509 | 338..465 | 98 | <- | Minus |
arm_2L | 4457740..4458059 | 17..337 | 99 | | Minus |
BO12162.pep Sequence
Translation from 16 to 481
> BO12162.pep
MSNIKRKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYH
PGYFGKVGMRNFHLRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAP
VIDLVKFGYYKLLGRGHLPARPVIVKAKYFSKKAEDKIKKAGGVCLLSAA
SFLDH
BO12162.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL27A-PD | 149 | CG15442-PD | 1..149 | 1..149 | 805 | 100 | Plus |
RpL27A-PA | 149 | CG15442-PA | 1..149 | 1..149 | 805 | 100 | Plus |
RpL27A-PC | 149 | CG15442-PC | 1..149 | 1..149 | 805 | 100 | Plus |