Clone BO12162 Report

Search the DGRC for BO12162

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptRpL27A-RA
Protein status:BO12162.pep: validated full length
Sequenced Size:481

Clone Sequence Records

BO12162.3prime Sequence

479 bp (478 high quality bases) assembled on 2006-04-20

> BO12162.3prime
ATGGTCTAGAAAGCTTGCGGCGCTCAGCAAGCACACACCGCCGGCCTTCT
TGATCTTGTCCTCAGCCTTCTTAGAGAAGTACTTGGCCTTCACGATGACG
GGGCGGGCGGGCAGGTGACCACGGCCCAGCAGCTTGTAGTAGCCGAATTT
AACCAAGTCGATGACGGGAGCCTTGGTGCTCTTCTCCTTCTCCAGCTCGG
CGAACTTCTCGGCTCCGACCAGGGACCAGAGCTTGTCCAGGTTGATCTCG
GGCCTGAACTTGTGCTGGCGACGCAGATGGAAGTTCCTCATGCCCACCTT
GCCGAAGTAACCAGGATGGTATTTGTCGAAGTTGATGCGGTGATGGTGCA
TGCCACCAGCGTTACCGCGACCTCCGGGATGCTTGCGGTGCTTGCCGATA
CGGCCGTGACCGTGGCTCACATGACCACGCAGCTTCCTGGTCTTCTTCCG
CTTGATATTCGACATGTCGACTGATAACT

BO12162.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG15442-PA 450 RpL27A-RA 1..447 465..19 2235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
RpL27A-RD 613 CG15442-RD 54..500 465..19 2235 100 Minus
RpL27A-RA 586 CG15442-RA 27..473 465..19 2235 100 Minus
RpL27A-RC 633 CG15442-RC 74..520 465..19 2235 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4457739..4458058 144..463 1600 100 Plus
2L 23513712 2L 4457384..4457509 19..144 630 100 Plus
Blast to na_te.dros performed on 2015-01-31 12:32:14 has no hits.

BO12162.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:00 Download gff for BO12162.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15442-PA 1..450 15..465 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:32 Download gff for BO12162.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15442-PA 1..450 15..465 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 00:01:12 Download gff for BO12162.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL27A-RC 74..526 11..465 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:05:44 Download gff for BO12162.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL27A-RC 74..526 11..465 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:05:44 Download gff for BO12162.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4457378..4457509 11..144 97 <- Plus
2L 4457740..4458067 145..474 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 00:01:12 Download gff for BO12162.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4457378..4457509 11..144 97 <- Plus
arm_2L 4457740..4458067 145..474 98   Plus

BO12162.5prime Sequence

479 bp (478 high quality bases) assembled on 2006-04-20

> BO12162.5prime
GAAGTTATCAGTCGACATGTCGAATATCAAGCGGAAGAAGACCAGGAAGC
TGCGTGGTCATGTGAGCCACGGTCACGGCCGTATCGGCAAGCACCGCAAG
CATCCCGGAGGTCGCGGTAACGCTGGTGGCATGCACCATCACCGCATCAA
CTTCGACAAATACCATCCTGGTTACTTCGGCAAGGTGGGCATGAGGAACT
TCCATCTGCGTCGCCAGCACAAGTTCAGGCCCGAGATCAACCTGGACAAG
CTCTGGTCCCTGGTCGGAGCCGAGAAGTTCGCCGAGCTGGAGAAGGAGAA
GAGCACCAAGGCTCCCGTCATCGACTTGGTTAAATTCGGCTACTACAAGC
TGCTGGGCCGTGGTCACCTGCCCGCCCGCCCCGTCATCGTGAAGGCCAAG
TACTTCTCTAAGAAGGCTGAGGACAAGATCAAGAAGGCCGGCGGTGTGTG
CTTGCTGAGCGCCGCAAGCTTTCTAGACC

BO12162.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG15442-PA 450 RpL27A-RA 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
RpL27A-RD 613 CG15442-RD 54..500 17..463 2235 100 Plus
RpL27A-RA 586 CG15442-RA 27..473 17..463 2235 100 Plus
RpL27A-RC 633 CG15442-RC 74..520 17..463 2235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4457739..4458058 338..19 1600 100 Minus
2L 23513712 2L 4457384..4457509 463..338 630 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:12:42 has no hits.

BO12162.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:00 Download gff for BO12162.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15442-PA 1..450 17..467 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:33 Download gff for BO12162.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15442-PA 1..450 17..467 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:53:32 Download gff for BO12162.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL27A-RC 74..526 17..471 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:19:42 Download gff for BO12162.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL27A-RC 74..526 17..471 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:42 Download gff for BO12162.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4457378..4457509 338..471 97 <- Minus
2L 4457740..4458067 8..337 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:53:32 Download gff for BO12162.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4457378..4457509 338..471 97 <- Minus
arm_2L 4457740..4458067 8..337 98   Minus

BO12162.complete Sequence

481 bp assembled on 2006-10-11

GenBank Submission: FJ632339

> BO12162.complete
GAAGTTATCAGTCGACATGTCGAATATCAAGCGGAAGAAGACCAGGAAGC
TGCGTGGTCATGTGAGCCACGGTCACGGCCGTATCGGCAAGCACCGCAAG
CATCCCGGAGGTCGCGGTAACGCTGGTGGCATGCACCATCACCGCATCAA
CTTCGACAAATACCATCCTGGTTACTTCGGCAAGGTGGGCATGAGGAACT
TCCATCTGCGTCGCCAGCACAAGTTCAGGCCCGAGATCAACCTGGACAAG
CTCTGGTCCCTGGTCGGAGCCGAGAAGTTCGCCGAGCTGGAGAAGGAGAA
GAGCACCAAGGCTCCCGTCATCGACTTGGTTAAATTCGGCTACTACAAGC
TGCTGGGCCGTGGTCACCTGCCCGCCCGCCCCGTCATCGTGAAGGCCAAG
TACTTCTCTAAGAAGGCTGAGGACAAGATCAAGAAGGCCGGCGGTGTGTG
CTTGCTGAGCGCCGCAAGCTTTCTAGACCAT

BO12162.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
RpL27A-RD 450 CG15442-PD 1..447 17..463 2235 100 Plus
RpL27A-RA 450 CG15442-PA 1..447 17..463 2235 100 Plus
RpL27A-RC 450 CG15442-PC 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
RpL27A-RD 613 CG15442-RD 54..500 17..463 2235 100 Plus
RpL27A-RA 586 CG15442-RA 27..473 17..463 2235 100 Plus
RpL27A-RC 633 CG15442-RC 74..520 17..463 2235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4457739..4458058 338..19 1600 100 Minus
2L 23513712 2L 4457384..4457509 463..338 630 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:27:47 has no hits.

BO12162.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:38 Download gff for BO12162.complete
Subject Subject Range Query Range Percent Splice Strand
RpL27A-RA 1..450 17..467 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:52 Download gff for BO12162.complete
Subject Subject Range Query Range Percent Splice Strand
RpL27A-RA 74..526 17..471 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:48 Download gff for BO12162.complete
Subject Subject Range Query Range Percent Splice Strand
RpL27A-RC 74..520 17..465 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:38 Download gff for BO12162.complete
Subject Subject Range Query Range Percent Splice Strand
RpL27A-RA 74..526 17..471 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:10 Download gff for BO12162.complete
Subject Subject Range Query Range Percent Splice Strand
RpL27A-RC 74..520 17..465 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:10 Download gff for BO12162.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4457382..4457509 338..465 98 <- Minus
2L 4457740..4458059 17..337 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:48 Download gff for BO12162.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4457382..4457509 338..465 98 <- Minus
arm_2L 4457740..4458059 17..337 99   Minus

BO12162.pep Sequence

Translation from 16 to 481

> BO12162.pep
MSNIKRKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYH
PGYFGKVGMRNFHLRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAP
VIDLVKFGYYKLLGRGHLPARPVIVKAKYFSKKAEDKIKKAGGVCLLSAA
SFLDH

BO12162.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
RpL27A-PD 149 CG15442-PD 1..149 1..149 805 100 Plus
RpL27A-PA 149 CG15442-PA 1..149 1..149 805 100 Plus
RpL27A-PC 149 CG15442-PC 1..149 1..149 805 100 Plus