Clone Sequence Records
BO12163.3prime Sequence
777 bp (770 high quality bases) assembled on 2006-04-20
> BO12163.3prime
ATGGTCTAGAAAGCTTGCGTTGGAGAAACCGCCAAAGATGCCCTTGAAGA
AGCGATAGATGGGCTTCGGAATCTCCACGGCAAACAGAACGGAGCTCTCC
TCCTCCTCCTGCAGTTGGACAATGGGCTGTGCGGATTGGGAGCGCTTTCC
GTCCGCAACGGATTGCTTTTGGAACAGCTTCTGCTGCTCGCTAAGATGAC
TGAGGATCAACTGTTGGATGGCAGCCTGCTCCTTCTGCACTTGAGTGAGG
CCATTGTTGGCCTGCAGCTTGATGGGCTGGCTCACATGGACATTGGTGGC
CTTAATCAGATCCTGGAAACTGATGCTGCCCGAGGGCGAAGCTTTACCCT
GGGTCAGCTCTGGAGCCGGAACCAGAAGTGGGAGAGCAGCCAGATTTATT
GGAAGCAGGACATTGGCATCTACCTTTTTACCATCACCGGATGCCTGACT
GGCCAGAGGATTGGGAATCAGGTAGAAATTGGGCTTCTGAGCCGGCTGCT
GCTGCGATTGCTGCTTCTGCTGCTGCTTCTGGGTTTCCTCGGAAAGAGCA
CGGAACTTTCCAAAGTACTGGTACTCCCCGTTGTCCTGGTATCCAGCAGG
CAGGCTCACGACCTGAGACTGGTTAATGTCCTGGTTCTTGTTCACATAGA
ATGGATTCGGGAGGAGCACCAAGCTGAGGCCCACTACCTTGGGGAAGTCC
GTGAAGGGATTGGGCAGGAAGGGGAACGGCTTGATTTCCTCGTGGATGTG
GGTGTGGTAAGTCACGTTGCCCCGGGA
BO12163.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12011-PA | 1587 | CG12011-RA | 831..1584 | 772..19 | 3770 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:54:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12011-RA | 1724 | CG12011-RA | 856..1609 | 772..19 | 3770 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:54:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1695544..1696297 | 772..19 | 3770 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:54:48 has no hits.
BO12163.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:01 Download gff for
BO12163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12011-PA | 827..1587 | 16..776 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:35 Download gff for
BO12163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12011-PA | 827..1587 | 16..776 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:28:22 Download gff for
BO12163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12011-RA | 852..1609 | 19..776 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:49:18 Download gff for
BO12163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12011-RA | 852..1609 | 19..776 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:49:18 Download gff for
BO12163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1695540..1696297 | 19..776 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:28:22 Download gff for
BO12163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1695540..1696297 | 19..776 | 99 | | Minus |
BO12163.5prime Sequence
806 bp (752 high quality bases) assembled on 2006-04-20
> BO12163.5prime
GAAGTTATCAGTCGACATGCATTCTCTACGACTCCTGGTTCTTCTTGGTG
TTCTGATGGCCACTCAGGGCAGAGTTCTAGAACAGGACAAGGCTCCGGAG
GTTGTCGCTTCACCTCAAGAAATCAAACCCAACGTGGAGGTCAAGCAGGA
AGTTGCCAATAAAGTGCGGGAAACCCAGCCGCAGCTGGGTGGCGCTGTCA
TCTCCCAAGGCCAATCTTCTGCAGCTATCGATCAGGTTGGTGTGAAGGAG
GGTCAAGATCAGGTGGCGAACTCCACAACTCCTGATGTCCAGGAAAGCCA
ACGCGAAGGGGTTTCTTTCGTCGAAGTGACTAAAGAAAACCAGGAAGCAC
ATGCCCCACTGAGTAAGGTCGTCAGTAGCCCATTAGCCCCAGCGATAGCC
GAGGAAAAGCAGCCCACTTCCAATGAGATACCCAAGGACCAGGAGCCAGG
CAAAGAAGTTATAACCCAGAACCATCCCGACGTCCAAGGACGCGACAATA
AGATTCAGTTTGTGTACGAGCAGCCTGGTCAAAACCAAAACCAGATTCCA
CAGATAAGCATTCAGGATCTGGAGAAGATCTTCAAGTATCAGGGAGTGCA
AGTGGTCAACGGATCTCAATCATTTAACCAGTATCCGAGCATCTACAACA
AGTTCCCATCTTACCCGAAGGTGGAATACGTTTCTGTGGTAAACACATCG
GATGCCAATGTGACCCAGCATCTCCACAACCACACGCACTATTATCCCAA
CCAGAAGAAGCCCGGATTTCCCTTTCCCTTCCTGCCCAATCCCTTCGAGA
AACTGG
BO12163.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12011-PA | 1587 | CG12011-RA | 1..790 | 17..806 | 3950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:32:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12011-RA | 1724 | CG12011-RA | 25..815 | 16..806 | 3955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:32:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1694716..1695503 | 19..806 | 3940 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 02:32:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 3939..3988 | 54..100 | 108 | 72 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 5392..5441 | 54..100 | 108 | 72 | Plus |
BO12163.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:02 Download gff for
BO12163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12011-PA | 1..790 | 17..806 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:36 Download gff for
BO12163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12011-PA | 1..790 | 17..806 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:12:40 Download gff for
BO12163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12011-RA | 21..815 | 8..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:41:02 Download gff for
BO12163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12011-RA | 21..815 | 8..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:41:02 Download gff for
BO12163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1694707..1695503 | 8..806 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:12:40 Download gff for
BO12163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1694707..1695503 | 8..806 | 99 | | Plus |
BO12163.complete Sequence
1618 bp assembled on 2008-01-17
GenBank Submission: FJ632340
> BO12163.complete
GAAGTTATCAGTCGACATGCATTCTCTACGACTCCTGGTTCTTCTTGGTG
TTCTGATGGCCACTCAGGGCAGAGTTCTAGAACAGGACAAGGCTCCGGAG
GTTGTCGCTTCACCTCAAGAAATCAAACCCAACGTGGAGGTCAAGCAGGA
AGTTGCCAATAAAGTGCGGGAAACCCAGCCGCAGCTGGGTGGCGCTGTCA
TCTCCCAAGGCCAATCTTCTGCAGCTATCGATCAGGTTGGTGTGAAGGAG
GGTCAAGATCAGGTGGCGAACTCCACAACTCCTGATGTCCAGGAAAGCCA
ACGCGAAGGGGTTTCTTTCGTCGAAGTGACTAAAGAAAACCAGGAAGCAC
ATGCCCCACTGAGTAAGGTCGTCAGTAGCCCATTAGCCCCAGCGATAGCC
GAGGAAAAGCAGCCCACTTCCAATGAGATACCCAAGGACCAGGAGCCAGG
CAAAGAAGTTATAACCCAGAACCATCCCGACGTCCAAGGACGCGACAATA
AGATTCAGTTTGTGTACGAGCAGCCTGGTCAAAACCAAAACCAGATTCCA
CAGATAAGCATTCAGGATCTGGAGAAGATCTTCAAGTATCAGGGAGTGCA
AGTGGTCAACGGATCTCAATCATTTAACCAGTATCCGAGCATCTACAACA
AGTTCCCATCTTACCCGAAGGTGGAATACGTTTCTGTGGTAAACACATCG
GATGCCAATGTGACCCAGCATCTCCACAACCACACGCACTATTATCCCAA
CCAGAAGAAGCCCGGATTTCCCTTTCCCTTCCTGCCCAATCCCTTCGAGA
AACTGGAACCCGTTTATGTTAATCTTAATCAAACTACGAACTCCACGGGC
AACGTGACTTACCACACCCACATCCACGAGGAAATCAAGCCGTTCCCCTT
CCTGCCCAATCCCTTCACGGACTTCCCCAAGGTAGTGGGCCTCAGCTTGG
TGCTCCTCCCGAATCCATTCTATGTGAACAAGAACCAGGACATTAACCAG
TCTCAGGTCGTGAGCCTGCCTGCTGGATACCAGGACAACGGGGAGTACCA
GTACTTTGGAAAGTTCCGTGCTCTTTCCGAGGAAACCCAGAAGCAGCAGC
AGAAGCAGCAATCGCAGCAGCAGCCGGCTCAGAAGCCCAATTTCTACCTG
ATTCCCAATCCTCTGGCCAGTCAGGCATCCGGTGATGGTAAAAAGGTAGA
TGCCAATGTCCTGCTTCCAATAAATCTGGCTGCTCTCCCACTTCTGGTTC
CGGCTCCAGAGCTGACCCAGGGTAAAGCTTCGCCCTCGGGCAGCATCAGT
TTCCAGGATCTGATTAAGGCCACCAATGTCCATGTGAGCCAGCCCATCAA
GCTGCAGGCCAACAATGGCCTCACTCAAGTGCAGAAGGAGCAGGCTGCCA
TCCAACAGTTGATCCTCAGTCATCTTAGCGAGCAGCAGAAGCTGTTCCAA
AAGCAATCCGTTGCGGACGGAAAGCGCTCCCAATCCGCACAGCCCATTGT
CCAACTGCAGGAGGAGGAGGAGAGCTCCGTTCTGTTTGCCGTGGAGATTC
CGAAGCCCATCTATCGCTTCTTCAAGGGCATCTTTGGCGGTTTCTCCAAC
GCAAGCTTTCTAGACCAT
BO12163.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:29:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12011-RA | 1587 | CG12011-PA | 1..1584 | 17..1600 | 7920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:29:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12011-RA | 1724 | CG12011-RA | 25..1609 | 16..1600 | 7925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:29:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1694716..1696297 | 19..1600 | 7910 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:29:03 has no hits.
BO12163.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:57 Download gff for
BO12163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12011-RA | 1..1587 | 17..1603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:36 Download gff for
BO12163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12011-RA | 24..1607 | 17..1602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:12 Download gff for
BO12163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12011-RA | 26..1609 | 17..1602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:57 Download gff for
BO12163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12011-RA | 19..1607 | 8..1600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:15 Download gff for
BO12163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12011-RA | 26..1609 | 17..1602 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:15 Download gff for
BO12163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1694715..1696297 | 17..1602 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:12 Download gff for
BO12163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1694715..1696297 | 17..1602 | 99 | | Plus |
BO12163.pep Sequence
Translation from 16 to 1618
> BO12163.pep
MHSLRLLVLLGVLMATQGRVLEQDKAPEVVASPQEIKPNVEVKQEVANKV
RETQPQLGGAVISQGQSSAAIDQVGVKEGQDQVANSTTPDVQESQREGVS
FVEVTKENQEAHAPLSKVVSSPLAPAIAEEKQPTSNEIPKDQEPGKEVIT
QNHPDVQGRDNKIQFVYEQPGQNQNQIPQISIQDLEKIFKYQGVQVVNGS
QSFNQYPSIYNKFPSYPKVEYVSVVNTSDANVTQHLHNHTHYYPNQKKPG
FPFPFLPNPFEKLEPVYVNLNQTTNSTGNVTYHTHIHEEIKPFPFLPNPF
TDFPKVVGLSLVLLPNPFYVNKNQDINQSQVVSLPAGYQDNGEYQYFGKF
RALSEETQKQQQKQQSQQQPAQKPNFYLIPNPLASQASGDGKKVDANVLL
PINLAALPLLVPAPELTQGKASPSGSISFQDLIKATNVHVSQPIKLQANN
GLTQVQKEQAAIQQLILSHLSEQQKLFQKQSVADGKRSQSAQPIVQLQEE
EESSVLFAVEIPKPIYRFFKGIFGGFSNASFLDH
BO12163.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:26:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12011-PA | 528 | CG12011-PA | 1..528 | 1..528 | 2715 | 100 | Plus |
