Clone Sequence Records
BO12172.3prime Sequence
937 bp (796 high quality bases) assembled on 2006-04-20
> BO12172.3prime
ATGGTCTAGAAAGCTTGCGCTTAATACATTATTCAACTCGAACATAGGTT
GGTCAACAATCAGCCGGTCGAAGCTCAGACGAGAGAGGTCGATGGTTCTG
AACTGACCATCCATGATCAGCTCGGATATGGCTCGGCCCACGGCCAGAGA
TTGCTGTACTCCGTGTCCGCTAAAACCGGTGGCTAGGTACAGATTGTTGT
AGTACGGGTGAGCTCCTAAAATGCCGTTCTCGTCGTATACGTTATGATCA
TAGCAGCCCGCCCAGCTATCCACCACTTGGGCTTCTCCAAGAACGGGAAT
TCTATTATACAAATGGGGTCTGATGTGCTGGGCGAAATATTGCGGATCAA
TCATCGCGCTATTATACTCTTCCGTCGAATCTTGCACGCAAATATAGTTG
CCGCCCAGGCCATCTCTGCGAATAAAGATGCCCGACGGATCTATTGTCAT
GGGCATATTCATTCCGGGTGCACTTTGGGCCTGCGAGTTGATGGCGTACA
TGTATCGCTTGCGTGCGTTGATGGGCAGCGGAACCCGAAGTATTCCTGGA
CCCACGCCTATCCTTGCTAATCGCGCGATTTGTTCGGAACTAGCACCGGC
GCTTATTACACACAGGGCGAACTTGCAAGTGCGTCGCGTACCATCGGGCA
GTTGGATGACCGCTTTTTCCAAGCCCGTGTAGGCACCCTCGTTGGAACCA
AGATCTGTGACAACAGAAATGTCCGTTTGGGATTTGAACTCGAAGTCGAC
CACCTGGCCACTGATAAAATGGGCGCCGTAGCCACTGGCTGACCGTCGGA
AATTGCTCAGAAAGTGCAACGGATTAAACCAGCCCTCTTTTTCCAGACCA
AGACAGCCCAAAGCGATGCCCCTTGGTGTTTAGCCAGGGGGAATCTGGCA
GTCAGTCGATCTGCAGTGAGAAGTTCATTTTCGGGCA
BO12172.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10655-PA | 1548 | l(2)37Bb-RA | 752..1545 | 812..19 | 3970 | 100 | Minus |
| CG10655-PA | 1548 | l(2)37Bb-RA | 693..747 | 871..817 | 275 | 100 | Minus |
| CG10655-PA | 1548 | l(2)37Bb-RA | 636..678 | 930..888 | 215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:53:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)37Bb-RA | 1708 | CG10655-RA | 744..1659 | 937..19 | 4475 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:53:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19049892..19050801 | 19..930 | 4400 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:53:25 has no hits.
BO12172.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:16 Download gff for
BO12172.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10655-PA | 631..1548 | 18..936 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:56 Download gff for
BO12172.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10655-PA | 631..1548 | 18..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:28:14 Download gff for
BO12172.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)37Bb-RA | 745..1659 | 19..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:49:10 Download gff for
BO12172.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)37Bb-RA | 745..1659 | 19..936 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:49:10 Download gff for
BO12172.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19049892..19050806 | 19..936 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:28:14 Download gff for
BO12172.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19049892..19050806 | 19..936 | 99 | | Plus |
BO12172.5prime Sequence
850 bp (800 high quality bases) assembled on 2006-04-20
> BO12172.5prime
GAAGTTATCAGTCGACATGTTGCGGTACAGACAAGTGGTGGGTCTCCTTC
AGCGCCGTAATTTCTCGGCCGGAGCAACGAGCAATGGAAGTGGATCTTCC
GGGGGCGACAAATCCGGCGAAGACCTGCACCCCATACGACGAACACTCCG
TTTGCTCGGGAACGATATGCGCAAAGTTAAGGAGTTCTTTGTACCAAAGG
AACCGGAGACCGAGAAAGTTCCCATTCCGACACAGAGCCAGTTTCACTTT
TCAGGGGAGCGCGACAAGAGCAAGGAAGCCACTGTGCCGGATGACTTCCA
GACCCATTGCGATGTGCTCATCATTGGCGGCGGTGGAGTGGGCAGCTCCA
TCGCCTATTGGCTGAAGGAGAAGGCCCGCGACGGTCTTAACGTTGTGGTG
GTCGAGAAGGATGACACGTATGCCCAGTCAGCCACGCGTGTTTCGGTGGG
CGGTCTTTGTCAGCAATTCTCCCTGCCCGAAAACATCCAAATGTCACTAT
TTGCCGCAGACTTCCTGCGAAGCGCAAGAAAACACTTTGGCGAGGAAGTG
CCTCTCCAGTTTACGCCCCATGGCCATCTGATGCTCGCTGGCGAGGAGCA
CGCGGAAAGCCTGAAGCGCTCCTCTCAGCTACAAAACGAACTGGGTGCCC
GAAATGAACTTCTCACTGCAGATCGACTGACTGCCAGATTCCCCTGGCTA
AACACCAAGGGCATCGCTTTGGGCTGTCTTGGTCTGGAAAAAGAGGGCTG
GTTTAATCCGTTGGCACTTCTGAGCAATTTCCGACGGTCAGCCAGTGGCT
ACGGCGCCCATTTTATCAGTGGCCAGGTGGTCGACTTCGAGTTCAAATCC
BO12172.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10655-PA | 1548 | l(2)37Bb-RA | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:11:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)37Bb-RA | 1708 | CG10655-RA | 115..948 | 17..850 | 4170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:11:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19050603..19051035 | 850..418 | 2165 | 100 | Minus |
| 2L | 23513712 | 2L | 19051097..19051498 | 418..17 | 2010 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:11:32 has no hits.
BO12172.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:17 Download gff for
BO12172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10655-PA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:57 Download gff for
BO12172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10655-PA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:47:57 Download gff for
BO12172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)37Bb-RA | 115..948 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:07:19 Download gff for
BO12172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)37Bb-RA | 115..948 | 17..850 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:07:19 Download gff for
BO12172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19051097..19051498 | 17..418 | 100 | | Minus |
| 2L | 19050603..19051034 | 419..850 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:47:57 Download gff for
BO12172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19050603..19051034 | 419..850 | 100 | <- | Minus |
| arm_2L | 19051097..19051498 | 17..418 | 100 | | Minus |
BO12172.complete Sequence
1579 bp assembled on 2006-10-11
GenBank Submission: FJ632341
> BO12172.complete
GAAGTTATCAGTCGACATGTTGCGGTACAGACAAGTGGTGGGTCTCCTTC
AGCGCCGTAATTTCTCGGCCGGAGCAACGAGCAATGGAAGTGGATCTTCC
GGGGGCGACAAATCCGGCGAAGACCTGCACCCCATACGACGAACACTCCG
TTTGCTCGGGAACGATATGCGCAAAGTTAAGGAGTTCTTTGTACCAAAGG
AACCGGAGACCGAGAAAGTTCCCATTCCGACACAGAGCCAGTTTCACTTT
TCAGGGGAGCGCGACAAGAGCAAGGAAGCCACTGTGCCGGATGACTTCCA
GACCCATTGCGATGTGCTCATCATTGGCGGCGGTGGAGTGGGCAGCTCCA
TCGCCTATTGGCTGAAGGAGAAGGCCCGCGACGGTCTTAACGTTGTGGTG
GTCGAGAAGGATGACACGTATGCCCAGTCAGCCACGCGTGTTTCGGTGGG
CGGTCTTTGTCAGCAATTCTCCCTGCCCGAAAACATCCAAATGTCACTAT
TTGCCGCAGACTTCCTGCGAAGCGCAAGAAAACACTTTGGCGAGGAAGTG
CCTCTCCAGTTTACGCCCCATGGCCATCTGATGCTCGCTGGCGAGGAGCA
CGCGGAAAGCCTGAAGCGCTCCTCTCAGCTACAAAACGAACTGGGTGCCC
GAAATGAACTTCTCACTGCAGATCGACTGACTGCCAGATTCCCCTGGCTA
AACACCAAGGGCATCGCTTTGGGCTGTCTTGGTCTGGAAAAAGAGGGCTG
GTTTAATCCGTTGGCACTTCTGAGCAATTTCCGACGGTCAGCCAGTGGCT
ACGGCGCCCATTTTATCAGTGGCCAGGTGGTCGACTTCGAGTTCAAATCC
CAAACGGACATTTCTGTTGTCACAGATCTTGGTTCCAACGAGGGTGCCTA
CACGGGCTTGGAAAAAGCGGTCATCCAACTGCCCGATGGTACGCGACGCA
CTTGCAAGTTCGCCCTGTGTGTAATAAGCGCCGGTGCTAGTTCCGAACAA
ATCGCGCGATTAGCAAGGATAGGCGTGGGTCCAGGAATACTTCGGGTTCC
GCTGCCCATCAACGCACGCAAGCGATACATGTACGCCATCAACTCGCAGG
CCCAAAGTGCACCCGGAATGAATATGCCCATGACAATAGATCCGTCGGGC
ATCTTTATTCGCAGAGATGGCCTGGGCGGCAACTATATTTGCGTGCAAGA
TTCGACGGAAGAGTATAATAGCGCGATGATTGATCCGCAATATTTCGCCC
AGCACATCAGACCCCATTTGTATAATAGAATTCCCGTTCTTGGAGAAGCC
CAAGTGGTGGATAGCTGGGCGGGCTGCTATGATCATAACGTATACGACGA
GAACGGCATTTTAGGAGCTCACCCGTACTACAACAATCTGTACCTAGCCA
CCGGTTTTAGCGGACACGGAGTACAGCAATCTCTGGCCGTGGGCCGAGCC
ATATCCGAGCTGATCATGGATGGTCAGTTCAGAACCATCGACCTCTCTCG
TCTGAGCTTCGACCGGCTGATTGTTGACCAACCTATGTTCGAGTTGAATA
ATGTATTAAGCGCAAGCTTTCTAGACCAT
BO12172.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:16:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)37Bb-RA | 1548 | CG10655-PA | 1..1545 | 17..1561 | 7725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)37Bb-RA | 1708 | CG10655-RA | 115..1659 | 17..1561 | 7725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19049892..19051035 | 1561..418 | 5720 | 100 | Minus |
| 2L | 23513712 | 2L | 19051097..19051498 | 418..17 | 2010 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:16:15 has no hits.
BO12172.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:17 Download gff for
BO12172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)37Bb-RA | 1..1548 | 17..1562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:57 Download gff for
BO12172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)37Bb-RA | 109..1653 | 17..1561 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:31 Download gff for
BO12172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)37Bb-RA | 120..1659 | 22..1563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:17 Download gff for
BO12172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)37Bb-RA | 109..1653 | 17..1561 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:28 Download gff for
BO12172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)37Bb-RA | 120..1659 | 22..1563 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:28 Download gff for
BO12172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19049890..19051034 | 419..1563 | 99 | <- | Minus |
| 2L | 19051097..19051493 | 22..418 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:31 Download gff for
BO12172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19049890..19051034 | 419..1563 | 99 | <- | Minus |
| arm_2L | 19051097..19051493 | 22..418 | 100 | | Minus |
BO12172.pep Sequence
Translation from 16 to 1579
> BO12172.pep
MLRYRQVVGLLQRRNFSAGATSNGSGSSGGDKSGEDLHPIRRTLRLLGND
MRKVKEFFVPKEPETEKVPIPTQSQFHFSGERDKSKEATVPDDFQTHCDV
LIIGGGGVGSSIAYWLKEKARDGLNVVVVEKDDTYAQSATRVSVGGLCQQ
FSLPENIQMSLFAADFLRSARKHFGEEVPLQFTPHGHLMLAGEEHAESLK
RSSQLQNELGARNELLTADRLTARFPWLNTKGIALGCLGLEKEGWFNPLA
LLSNFRRSASGYGAHFISGQVVDFEFKSQTDISVVTDLGSNEGAYTGLEK
AVIQLPDGTRRTCKFALCVISAGASSEQIARLARIGVGPGILRVPLPINA
RKRYMYAINSQAQSAPGMNMPMTIDPSGIFIRRDGLGGNYICVQDSTEEY
NSAMIDPQYFAQHIRPHLYNRIPVLGEAQVVDSWAGCYDHNVYDENGILG
AHPYYNNLYLATGFSGHGVQQSLAVGRAISELIMDGQFRTIDLSRLSFDR
LIVDQPMFELNNVLSASFLDH
BO12172.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)37Bb-PA | 515 | CG10655-PA | 1..515 | 1..515 | 2679 | 100 | Plus |
| CG3270-PA | 440 | CG3270-PA | 32..440 | 98..513 | 1047 | 49.5 | Plus |
