Clone BO12176 Report

Search the DGRC for BO12176

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptRpS7-RA
Protein status:BO12176.pep: validated full length
Sequenced Size:616

Clone Sequence Records

BO12176.3prime Sequence

614 bp (613 high quality bases) assembled on 2006-04-20

> BO12176.3prime
ATGGTCTAGAAAGCTTGCGACATTCAGGTAGTTGTCGGGGAATTCGAAGG
TAACATCGCGACCAGTCAGCTTCTTGTAGACCGAGGTGAAGGTGTCGACT
TTGTGTTCAATGGTGGTCTGCTGGTTCTTGTCCAGGTGCACCTTGACCAG
CTGGGAGCCGTCCAGCTTGACGCGGATGCGCTTGCCCACAATCTCGGCGG
GGAAGACCAGATCCTCAAGGATGGCGTCGTACACAGCGGTCAGAGTCCTG
GAGCGTGGACGCTTCTGCTTGAGGGGGTTGCGGGCCTTGCGCGTGGGCTT
GGGCAGGATCTTGCGCTCCGCAATCACGACGACGTGCTTGCCCGAGAACT
TCTTCTCCAGCTCGCGGACCAGGATGATCTGGATCTTCTGGAACACCTTC
TGCTGTGGAATGGGCACGTAGATGATGACGGCCTTCTTGCTGCCGAACTC
GATCTCGCGGGCACGGGTGATGTGCAGATCGCGCAGGTAGGGCTTCAGGT
CGCTGTTGGCCTCGAGTTCCACCAACGCCTGGGCAATGGACTTCTCGAAG
TCATCGGGATCCGAGCCGCCGGGCTTGATAATCTTGGAGCCGATAGCCAT
GTCGACTGATAACT

BO12176.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1883-PD 585 RpS7-RD 1..582 600..19 2910 100 Minus
CG1883-PA 585 RpS7-RA 1..582 600..19 2910 100 Minus
CG1883-PC 585 RpS7-RC 1..582 600..19 2910 100 Minus
CG1883-PB 753 RpS7-RB 1..503 600..98 2515 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
RpS7-RE 813 CG1883-RE 38..619 600..19 2910 100 Minus
RpS7-RC 978 CG1883-RC 286..867 600..19 2910 100 Minus
RpS7-RA 725 CG1883-RA 33..614 600..19 2910 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30208091..30208427 98..434 1685 100 Plus
3R 32079331 3R 30208489..30208657 432..600 845 100 Plus
3R 32079331 3R 30206641..30206721 19..99 405 100 Plus
Blast to na_te.dros performed on 2015-02-02 17:53:00 has no hits.

BO12176.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:28:24 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:06 Download gff for BO12176.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1883-PC 1..585 18..600 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:28:11 Download gff for BO12176.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS7-RA 22..620 13..607 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:49:07 Download gff for BO12176.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS7-RA 22..620 13..607 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:49:07 Download gff for BO12176.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30206635..30206721 13..99 96 <- Plus
3R 30208093..30208425 100..432 100 <- Plus
3R 30208490..30208657 433..600 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:28:11 Download gff for BO12176.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26032357..26032443 13..99 96 <- Plus
arm_3R 26033815..26034147 100..432 100 <- Plus
arm_3R 26034212..26034379 433..600 100   Plus

BO12176.5prime Sequence

614 bp (613 high quality bases) assembled on 2006-04-20

> BO12176.5prime
GAAGTTATCAGTCGACATGGCTATCGGCTCCAAGATTATCAAGCCCGGCG
GCTCGGATCCCGATGACTTCGAGAAGTCCATTGCCCAGGCGTTGGTGGAA
CTCGAGGCCAACAGCGACCTGAAGCCCTACCTGCGCGATCTGCACATCAC
CCGTGCCCGCGAGATCGAGTTCGGCAGCAAGAAGGCCGTCATCATCTACG
TGCCCATTCCACAGCAGAAGGTGTTCCAGAAGATCCAGATCATCCTGGTC
CGCGAGCTGGAGAAGAAGTTCTCGGGCAAGCACGTCGTCGTGATTGCGGA
GCGCAAGATCCTGCCCAAGCCCACGCGCAAGGCCCGCAACCCCCTCAAGC
AGAAGCGTCCACGCTCCAGGACTCTGACCGCTGTGTACGACGCCATCCTT
GAGGATCTGGTCTTCCCCGCCGAGATTGTGGGCAAGCGCATCCGCGTCAA
GCTGGACGGCTCCCAGCTGGTCAAGGTGCACCTGGACAAGAACCAGCAGA
CCACCATTGAACACAAAGTCGACACCTTCACCTCGGTCTACAAGAAGCTG
ACTGGTCGCGATGTTACCTTCGAATTCCCCGACAACTACCTGAATGTCGC
AAGCTTTCTAGACC

BO12176.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1883-PD 585 RpS7-RD 1..582 17..598 2910 100 Plus
CG1883-PA 585 RpS7-RA 1..582 17..598 2910 100 Plus
CG1883-PC 585 RpS7-RC 1..582 17..598 2910 100 Plus
CG1883-PB 753 RpS7-RB 1..503 17..519 2515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
RpS7-RE 813 CG1883-RE 38..619 17..598 2910 100 Plus
RpS7-RC 978 CG1883-RC 286..867 17..598 2910 100 Plus
RpS7-RA 725 CG1883-RA 33..614 17..598 2910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:23:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30208091..30208427 519..183 1685 100 Minus
3R 32079331 3R 30208489..30208657 185..17 845 100 Minus
3R 32079331 3R 30206641..30206721 598..518 405 100 Minus
Blast to na_te.dros performed on 2015-02-09 09:23:22 has no hits.

BO12176.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:28:25 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:08 Download gff for BO12176.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1883-PC 1..585 17..599 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:18:50 Download gff for BO12176.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS7-RA 22..620 10..604 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:48:53 Download gff for BO12176.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS7-RA 22..620 10..604 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:48:53 Download gff for BO12176.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30206635..30206721 518..604 96 <- Minus
3R 30208093..30208425 185..517 100 <- Minus
3R 30208490..30208657 17..184 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:18:50 Download gff for BO12176.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26032357..26032443 518..604 96 <- Minus
arm_3R 26033815..26034147 185..517 100 <- Minus
arm_3R 26034212..26034379 17..184 100   Minus

BO12176.complete Sequence

616 bp assembled on 2006-10-11

GenBank Submission: FJ632342

> BO12176.complete
GAAGTTATCAGTCGACATGGCTATCGGCTCCAAGATTATCAAGCCCGGCG
GCTCGGATCCCGATGACTTCGAGAAGTCCATTGCCCAGGCGTTGGTGGAA
CTCGAGGCCAACAGCGACCTGAAGCCCTACCTGCGCGATCTGCACATCAC
CCGTGCCCGCGAGATCGAGTTCGGCAGCAAGAAGGCCGTCATCATCTACG
TGCCCATTCCACAGCAGAAGGTGTTCCAGAAGATCCAGATCATCCTGGTC
CGCGAGCTGGAGAAGAAGTTCTCGGGCAAGCACGTCGTCGTGATTGCGGA
GCGCAAGATCCTGCCCAAGCCCACGCGCAAGGCCCGCAACCCCCTCAAGC
AGAAGCGTCCACGCTCCAGGACTCTGACCGCTGTGTACGACGCCATCCTT
GAGGATCTGGTCTTCCCCGCCGAGATTGTGGGCAAGCGCATCCGCGTCAA
GCTGGACGGCTCCCAGCTGGTCAAGGTGCACCTGGACAAGAACCAGCAGA
CCACCATTGAACACAAAGTCGACACCTTCACCTCGGTCTACAAGAAGCTG
ACTGGTCGCGATGTTACCTTCGAATTCCCCGACAACTACCTGAATGTCGC
AAGCTTTCTAGACCAT

BO12176.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
RpS7-RE 585 CG1883-PE 1..582 17..598 2910 100 Plus
RpS7-RC 585 CG1883-PC 1..582 17..598 2910 100 Plus
RpS7-RA 585 CG1883-PA 1..582 17..598 2910 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
RpS7-RE 813 CG1883-RE 38..619 17..598 2910 100 Plus
RpS7-RC 978 CG1883-RC 286..867 17..598 2910 100 Plus
RpS7-RA 725 CG1883-RA 33..614 17..598 2910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30208091..30208427 519..183 1685 100 Minus
3R 32079331 3R 30208489..30208657 185..17 845 100 Minus
3R 32079331 3R 30206641..30206721 598..518 405 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:51:47 has no hits.

BO12176.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:18 Download gff for BO12176.complete
Subject Subject Range Query Range Percent Splice Strand
RpS7-RC 1..585 17..599 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:31 Download gff for BO12176.complete
Subject Subject Range Query Range Percent Splice Strand
RpS7-RC 286..873 17..604 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:46:21 Download gff for BO12176.complete
Subject Subject Range Query Range Percent Splice Strand
RpS7-RA 33..614 17..600 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:18 Download gff for BO12176.complete
Subject Subject Range Query Range Percent Splice Strand
RpS7-RC 286..873 17..604 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:19 Download gff for BO12176.complete
Subject Subject Range Query Range Percent Splice Strand
RpS7-RA 33..614 17..600 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:19 Download gff for BO12176.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30206639..30206721 518..600 97 <- Minus
3R 30208093..30208425 185..517 100 <- Minus
3R 30208490..30208657 17..184 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:46:21 Download gff for BO12176.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26032361..26032443 518..600 97 <- Minus
arm_3R 26033815..26034147 185..517 100 <- Minus
arm_3R 26034212..26034379 17..184 100   Minus

BO12176.pep Sequence

Translation from 16 to 616

> BO12176.pep
MAIGSKIIKPGGSDPDDFEKSIAQALVELEANSDLKPYLRDLHITRAREI
EFGSKKAVIIYVPIPQQKVFQKIQIILVRELEKKFSGKHVVVIAERKILP
KPTRKARNPLKQKRPRSRTLTAVYDAILEDLVFPAEIVGKRIRVKLDGSQ
LVKVHLDKNQQTTIEHKVDTFTSVYKKLTGRDVTFEFPDNYLNVASFLDH

BO12176.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:45
Subject Length Description Subject Range Query Range Score Percent Strand
RpS7-PE 194 CG1883-PE 1..194 1..194 974 100 Plus
RpS7-PC 194 CG1883-PC 1..194 1..194 974 100 Plus
RpS7-PA 194 CG1883-PA 1..194 1..194 974 100 Plus
RpS7-PD 194 CG1883-PD 1..194 1..194 974 100 Plus