Clone Sequence Records
BO12176.3prime Sequence
614 bp (613 high quality bases) assembled on 2006-04-20
> BO12176.3prime
ATGGTCTAGAAAGCTTGCGACATTCAGGTAGTTGTCGGGGAATTCGAAGG
TAACATCGCGACCAGTCAGCTTCTTGTAGACCGAGGTGAAGGTGTCGACT
TTGTGTTCAATGGTGGTCTGCTGGTTCTTGTCCAGGTGCACCTTGACCAG
CTGGGAGCCGTCCAGCTTGACGCGGATGCGCTTGCCCACAATCTCGGCGG
GGAAGACCAGATCCTCAAGGATGGCGTCGTACACAGCGGTCAGAGTCCTG
GAGCGTGGACGCTTCTGCTTGAGGGGGTTGCGGGCCTTGCGCGTGGGCTT
GGGCAGGATCTTGCGCTCCGCAATCACGACGACGTGCTTGCCCGAGAACT
TCTTCTCCAGCTCGCGGACCAGGATGATCTGGATCTTCTGGAACACCTTC
TGCTGTGGAATGGGCACGTAGATGATGACGGCCTTCTTGCTGCCGAACTC
GATCTCGCGGGCACGGGTGATGTGCAGATCGCGCAGGTAGGGCTTCAGGT
CGCTGTTGGCCTCGAGTTCCACCAACGCCTGGGCAATGGACTTCTCGAAG
TCATCGGGATCCGAGCCGCCGGGCTTGATAATCTTGGAGCCGATAGCCAT
GTCGACTGATAACT
BO12176.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1883-PD | 585 | RpS7-RD | 1..582 | 600..19 | 2910 | 100 | Minus |
CG1883-PA | 585 | RpS7-RA | 1..582 | 600..19 | 2910 | 100 | Minus |
CG1883-PC | 585 | RpS7-RC | 1..582 | 600..19 | 2910 | 100 | Minus |
CG1883-PB | 753 | RpS7-RB | 1..503 | 600..98 | 2515 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:53:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS7-RE | 813 | CG1883-RE | 38..619 | 600..19 | 2910 | 100 | Minus |
RpS7-RC | 978 | CG1883-RC | 286..867 | 600..19 | 2910 | 100 | Minus |
RpS7-RA | 725 | CG1883-RA | 33..614 | 600..19 | 2910 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:52:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30208091..30208427 | 98..434 | 1685 | 100 | Plus |
3R | 32079331 | 3R | 30208489..30208657 | 432..600 | 845 | 100 | Plus |
3R | 32079331 | 3R | 30206641..30206721 | 19..99 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:53:00 has no hits.
BO12176.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:28:24 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:06 Download gff for
BO12176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1883-PC | 1..585 | 18..600 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:28:11 Download gff for
BO12176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RA | 22..620 | 13..607 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:49:07 Download gff for
BO12176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RA | 22..620 | 13..607 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:49:07 Download gff for
BO12176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30206635..30206721 | 13..99 | 96 | <- | Plus |
3R | 30208093..30208425 | 100..432 | 100 | <- | Plus |
3R | 30208490..30208657 | 433..600 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:28:11 Download gff for
BO12176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26032357..26032443 | 13..99 | 96 | <- | Plus |
arm_3R | 26033815..26034147 | 100..432 | 100 | <- | Plus |
arm_3R | 26034212..26034379 | 433..600 | 100 | | Plus |
BO12176.5prime Sequence
614 bp (613 high quality bases) assembled on 2006-04-20
> BO12176.5prime
GAAGTTATCAGTCGACATGGCTATCGGCTCCAAGATTATCAAGCCCGGCG
GCTCGGATCCCGATGACTTCGAGAAGTCCATTGCCCAGGCGTTGGTGGAA
CTCGAGGCCAACAGCGACCTGAAGCCCTACCTGCGCGATCTGCACATCAC
CCGTGCCCGCGAGATCGAGTTCGGCAGCAAGAAGGCCGTCATCATCTACG
TGCCCATTCCACAGCAGAAGGTGTTCCAGAAGATCCAGATCATCCTGGTC
CGCGAGCTGGAGAAGAAGTTCTCGGGCAAGCACGTCGTCGTGATTGCGGA
GCGCAAGATCCTGCCCAAGCCCACGCGCAAGGCCCGCAACCCCCTCAAGC
AGAAGCGTCCACGCTCCAGGACTCTGACCGCTGTGTACGACGCCATCCTT
GAGGATCTGGTCTTCCCCGCCGAGATTGTGGGCAAGCGCATCCGCGTCAA
GCTGGACGGCTCCCAGCTGGTCAAGGTGCACCTGGACAAGAACCAGCAGA
CCACCATTGAACACAAAGTCGACACCTTCACCTCGGTCTACAAGAAGCTG
ACTGGTCGCGATGTTACCTTCGAATTCCCCGACAACTACCTGAATGTCGC
AAGCTTTCTAGACC
BO12176.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1883-PD | 585 | RpS7-RD | 1..582 | 17..598 | 2910 | 100 | Plus |
CG1883-PA | 585 | RpS7-RA | 1..582 | 17..598 | 2910 | 100 | Plus |
CG1883-PC | 585 | RpS7-RC | 1..582 | 17..598 | 2910 | 100 | Plus |
CG1883-PB | 753 | RpS7-RB | 1..503 | 17..519 | 2515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:23:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS7-RE | 813 | CG1883-RE | 38..619 | 17..598 | 2910 | 100 | Plus |
RpS7-RC | 978 | CG1883-RC | 286..867 | 17..598 | 2910 | 100 | Plus |
RpS7-RA | 725 | CG1883-RA | 33..614 | 17..598 | 2910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:23:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30208091..30208427 | 519..183 | 1685 | 100 | Minus |
3R | 32079331 | 3R | 30208489..30208657 | 185..17 | 845 | 100 | Minus |
3R | 32079331 | 3R | 30206641..30206721 | 598..518 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 09:23:22 has no hits.
BO12176.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:28:25 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:08 Download gff for
BO12176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1883-PC | 1..585 | 17..599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:18:50 Download gff for
BO12176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RA | 22..620 | 10..604 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:48:53 Download gff for
BO12176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RA | 22..620 | 10..604 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:48:53 Download gff for
BO12176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30206635..30206721 | 518..604 | 96 | <- | Minus |
3R | 30208093..30208425 | 185..517 | 100 | <- | Minus |
3R | 30208490..30208657 | 17..184 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:18:50 Download gff for
BO12176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26032357..26032443 | 518..604 | 96 | <- | Minus |
arm_3R | 26033815..26034147 | 185..517 | 100 | <- | Minus |
arm_3R | 26034212..26034379 | 17..184 | 100 | | Minus |
BO12176.complete Sequence
616 bp assembled on 2006-10-11
GenBank Submission: FJ632342
> BO12176.complete
GAAGTTATCAGTCGACATGGCTATCGGCTCCAAGATTATCAAGCCCGGCG
GCTCGGATCCCGATGACTTCGAGAAGTCCATTGCCCAGGCGTTGGTGGAA
CTCGAGGCCAACAGCGACCTGAAGCCCTACCTGCGCGATCTGCACATCAC
CCGTGCCCGCGAGATCGAGTTCGGCAGCAAGAAGGCCGTCATCATCTACG
TGCCCATTCCACAGCAGAAGGTGTTCCAGAAGATCCAGATCATCCTGGTC
CGCGAGCTGGAGAAGAAGTTCTCGGGCAAGCACGTCGTCGTGATTGCGGA
GCGCAAGATCCTGCCCAAGCCCACGCGCAAGGCCCGCAACCCCCTCAAGC
AGAAGCGTCCACGCTCCAGGACTCTGACCGCTGTGTACGACGCCATCCTT
GAGGATCTGGTCTTCCCCGCCGAGATTGTGGGCAAGCGCATCCGCGTCAA
GCTGGACGGCTCCCAGCTGGTCAAGGTGCACCTGGACAAGAACCAGCAGA
CCACCATTGAACACAAAGTCGACACCTTCACCTCGGTCTACAAGAAGCTG
ACTGGTCGCGATGTTACCTTCGAATTCCCCGACAACTACCTGAATGTCGC
AAGCTTTCTAGACCAT
BO12176.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:51:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS7-RE | 585 | CG1883-PE | 1..582 | 17..598 | 2910 | 100 | Plus |
RpS7-RC | 585 | CG1883-PC | 1..582 | 17..598 | 2910 | 100 | Plus |
RpS7-RA | 585 | CG1883-PA | 1..582 | 17..598 | 2910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS7-RE | 813 | CG1883-RE | 38..619 | 17..598 | 2910 | 100 | Plus |
RpS7-RC | 978 | CG1883-RC | 286..867 | 17..598 | 2910 | 100 | Plus |
RpS7-RA | 725 | CG1883-RA | 33..614 | 17..598 | 2910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30208091..30208427 | 519..183 | 1685 | 100 | Minus |
3R | 32079331 | 3R | 30208489..30208657 | 185..17 | 845 | 100 | Minus |
3R | 32079331 | 3R | 30206641..30206721 | 598..518 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:51:47 has no hits.
BO12176.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:18 Download gff for
BO12176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RC | 1..585 | 17..599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:31 Download gff for
BO12176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RC | 286..873 | 17..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:46:21 Download gff for
BO12176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RA | 33..614 | 17..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:18 Download gff for
BO12176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RC | 286..873 | 17..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:19 Download gff for
BO12176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RA | 33..614 | 17..600 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:19 Download gff for
BO12176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30206639..30206721 | 518..600 | 97 | <- | Minus |
3R | 30208093..30208425 | 185..517 | 100 | <- | Minus |
3R | 30208490..30208657 | 17..184 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:46:21 Download gff for
BO12176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26032361..26032443 | 518..600 | 97 | <- | Minus |
arm_3R | 26033815..26034147 | 185..517 | 100 | <- | Minus |
arm_3R | 26034212..26034379 | 17..184 | 100 | | Minus |
BO12176.pep Sequence
Translation from 16 to 616
> BO12176.pep
MAIGSKIIKPGGSDPDDFEKSIAQALVELEANSDLKPYLRDLHITRAREI
EFGSKKAVIIYVPIPQQKVFQKIQIILVRELEKKFSGKHVVVIAERKILP
KPTRKARNPLKQKRPRSRTLTAVYDAILEDLVFPAEIVGKRIRVKLDGSQ
LVKVHLDKNQQTTIEHKVDTFTSVYKKLTGRDVTFEFPDNYLNVASFLDH
BO12176.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS7-PE | 194 | CG1883-PE | 1..194 | 1..194 | 974 | 100 | Plus |
RpS7-PC | 194 | CG1883-PC | 1..194 | 1..194 | 974 | 100 | Plus |
RpS7-PA | 194 | CG1883-PA | 1..194 | 1..194 | 974 | 100 | Plus |
RpS7-PD | 194 | CG1883-PD | 1..194 | 1..194 | 974 | 100 | Plus |