Clone Sequence Records
BO12178.3prime Sequence
778 bp (777 high quality bases) assembled on 2006-04-20
> BO12178.3prime
ATGGTCTAGAAAGCTTGCCACGGCCATGTCCATTTGGATTTTTGGATGTG
GATTGTAGTCGACTATCTGAAAGTCCTCGAAGCGGAAGTCCTCGATGTCC
TGCACCTGACGTTTAATGATCAGCTTGGGAAAGGGTCGCGGTGTGCGCTC
CAGTTGCTCCTTCAGCGGCTCTACGTGGTTCAGGTAGACGTGTGTGTCGC
CCATGGTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCACATGGGCAATC
ATGTGGGTGAGCAGGGCATAGGAGGCGATGTTGAAGGGTACGCCCAGGCC
CATGTCTGCGCTTCTCTGGTATAGCTGGCACGAAAGCTCACCGCGCTTCT
CGGAGACGTAAAACTGCGCCAAGCAGTGGCACGGCGGCAGGGCCATCTTT
GGGATGTCCAGTGGATTCCAAGCCGACATGATGATGCGACGGTCTGAGGG
GTTATTCCTGATGGTGTCGATCACCTGGCGCAGCTGGTCGATCCCCTTGC
CGCTGTAGTCGTCGTCGCAGGTGCCGTACTGCGCCCCGAAATGCCTCCAT
TGGAAGCCGTACACCGGCCCCAGATCCCCAACGGCTCGCCCCGTGAACCC
CATCTTGTCCAGAAATTCTCTGGAGCTGTTCCCATCCCAGATGTGCACAT
TCTTCGCCTGCAGCAGCTTGGCGTCCGTCTTGCCCGCCACGAACCACAGC
AGCTCCTCGGCCACCGCGCGGAAGAAGACGCGCTTCGTGGTCAGCAAAGG
AAAGGAGTTCCGCATGTCGAAGCGCATC
BO12178.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3181-PA | 966 | Ts-RA | 204..963 | 778..19 | 3800 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:02:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ts-RB | 1136 | CG3181-RB | 272..1031 | 778..19 | 3800 | 100 | Minus |
| Ts-RA | 1346 | CG3181-RA | 272..1031 | 778..19 | 3800 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:02:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2968608..2969367 | 19..778 | 3800 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:02:54 has no hits.
BO12178.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:28:28 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:12 Download gff for
BO12178.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3181-PA | 204..966 | 18..778 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:45:47 Download gff for
BO12178.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ts-RA | 272..1036 | 13..778 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:02:42 Download gff for
BO12178.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ts-RA | 272..1036 | 13..778 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:02:42 Download gff for
BO12178.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2968603..2969367 | 13..778 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:45:47 Download gff for
BO12178.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2968603..2969367 | 13..778 | 99 | | Plus |
BO12178.5prime Sequence
916 bp (766 high quality bases) assembled on 2006-04-20
> BO12178.5prime
GAAGTTATCAGTCGACATGGTTTTAACACCAACGAAAGATGGGCCCGACC
AGGAGAGCATGCCGTTGCCGGCCGACAATGGGGAGTCACCAAGTAAACAG
CAGGCCCCTGTCAATCGGGATGAGATGCACTACTTGGATCTTCTGAGGCA
CATCATCGCAAATGGAGAGCAGCGGATGGACCGCACGGAGGTGGGCACTC
TGTCCGTGTTCGGCAGTCAGATGCGCTTCGACATGCGGAACTCCTTTCCT
TTGCTGACCACGAAGCGCGTCTTCTTCCGCGCGGTGGCCGAGGAGCTGCT
GTGGTTCGTGGCGGGCAAGACGGACGCCAAGCTGCTGCAGGCGAAGAATG
TGCACATCTGGGATGGGAACAGCTCCAGAGAATTTCTGGACAAGATGGGG
TTCACGGGGCGAGCCGTTGGGGATCTGGGGCCGGTGTACGGCTTCCAATG
GAGGCATTTCGGGGCGCAGTACGGCACCTGCGACGACGACTACAGCGGCA
AGGGGATCGACCAGCTGCGCCAGGTGATCGACACCATCAGGAATAACCCC
TCAGACCGTCGCATCATCATGTCGGCTTGGAATCCACTGGACATCCCAAA
GATGGCCCTGCCGCCGTGCCACTGCTTGGCGCAGTTTTACGTCTCCGAGA
AGCGCGGTGAGCTTTCGTGCCAGCTATACCAGAGAAGCGCAGACATGGGC
CTGGGCGTACCCTTCAACATCGCCTCCTATGCCCTGCTCACCCACATGAT
TGCCCATGTGACGGGTCTGAAGCCGGGCGACTTTGTTCACACCATGGGCG
ACACACACGTCTACCTGAACCACGTAGAGCCGCTGAAAGAGCAACTGGAG
CGCACACCGCGACCTTTTCCAAGCTGATCATTAAACGTCAGGTGCAGGAC
ATCGAGGACTTCCGCT
BO12178.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:38:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3181-PA | 966 | Ts-RA | 1..854 | 17..870 | 4220 | 99.7 | Plus |
| CG3181-PA | 966 | Ts-RA | 848..901 | 863..916 | 245 | 98.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:54:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ts-RB | 1136 | CG3181-RB | 65..969 | 13..916 | 4455 | 99.6 | Plus |
| Ts-RA | 1346 | CG3181-RA | 65..969 | 13..916 | 4455 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 01:54:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2968670..2969574 | 916..13 | 4430 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 01:54:05 has no hits.
BO12178.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:28:29 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:13 Download gff for
BO12178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3181-PA | 1..901 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:35:43 Download gff for
BO12178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ts-RA | 56..969 | 5..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:04:00 Download gff for
BO12178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ts-RA | 56..969 | 5..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:04:00 Download gff for
BO12178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2968670..2969578 | 5..916 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:35:43 Download gff for
BO12178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2968670..2969578 | 5..916 | 99 | | Minus |
BO12178.complete Sequence
997 bp assembled on 2006-10-11
GenBank Submission: FJ632343
> BO12178.complete
GAAGTTATCAGTCGACATGGTTTTAACACCAACGAAAGATGGGCCCGACC
AGGAGAGCATGCCGTTGCCGGCCGACAATGGGGAGTCACCAAGTAAACAG
CAGGCCCCTGTCAATCGGGATGAGATGCACTACTTGGATCTTCTGAGGCA
CATCATCGCAAATGGAGAGCAGCGGATGGACCGCACGGAGGTGGGCACTC
TGTCCGTGTTCGGCAGTCAGATGCGCTTCGACATGCGGAACTCCTTTCCT
TTGCTGACCACGAAGCGCGTCTTCTTCCGCGCGGTGGCCGAGGAGCTGCT
GTGGTTCGTGGCGGGCAAGACGGACGCCAAGCTGCTGCAGGCGAAGAATG
TGCACATCTGGGATGGGAACAGCTCCAGAGAATTTCTGGACAAGATGGGG
TTCACGGGGCGAGCCGTTGGGGATCTGGGGCCGGTGTACGGCTTCCAATG
GAGGCATTTCGGGGCGCAGTACGGCACCTGCGACGACGACTACAGCGGCA
AGGGGATCGACCAGCTGCGCCAGGTGATCGACACCATCAGGAATAACCCC
TCAGACCGTCGCATCATCATGTCGGCTTGGAATCCACTGGACATCCCAAA
GATGGCCCTGCCGCCGTGCCACTGCTTGGCGCAGTTTTACGTCTCCGAGA
AGCGCGGTGAGCTTTCGTGCCAGCTATACCAGAGAAGCGCAGACATGGGC
CTGGGCGTACCCTTCAACATCGCCTCCTATGCCCTGCTCACCCACATGAT
TGCCCATGTGACGGGTCTGAAGCCGGGCGACTTTGTTCACACCATGGGCG
ACACACACGTCTACCTGAACCACGTAGAGCCGCTGAAGGAGCAACTGGAG
CGCACACCGCGACCCTTTCCCAAGCTGATCATTAAACGTCAGGTGCAGGA
CATCGAGGACTTCCGCTTCGAGGACTTTCAGATAGTCGACTACAATCCAC
ATCCAAAAATCCAAATGGACATGGCCGTGGCAAGCTTTCTAGACCAT
BO12178.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ts-RB | 966 | CG3181-PB | 1..963 | 17..979 | 4815 | 100 | Plus |
| Ts-RA | 966 | CG3181-PA | 1..963 | 17..979 | 4815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ts-RB | 1136 | CG3181-RB | 65..1031 | 13..979 | 4820 | 99.9 | Plus |
| Ts-RA | 1346 | CG3181-RA | 65..1031 | 13..979 | 4820 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2968608..2969574 | 979..13 | 4820 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:53:00 has no hits.
BO12178.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:19 Download gff for
BO12178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ts-RA | 1..966 | 17..980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:59 Download gff for
BO12178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ts-RA | 38..1018 | 5..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:39 Download gff for
BO12178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ts-RA | 69..1031 | 17..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:19 Download gff for
BO12178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ts-RA | 38..1018 | 5..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:46 Download gff for
BO12178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ts-RA | 69..1031 | 17..981 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:46 Download gff for
BO12178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2968606..2969570 | 17..981 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:39 Download gff for
BO12178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2968606..2969570 | 17..981 | 99 | | Minus |
BO12178.pep Sequence
Translation from 16 to 997
> BO12178.pep
MVLTPTKDGPDQESMPLPADNGESPSKQQAPVNRDEMHYLDLLRHIIANG
EQRMDRTEVGTLSVFGSQMRFDMRNSFPLLTTKRVFFRAVAEELLWFVAG
KTDAKLLQAKNVHIWDGNSSREFLDKMGFTGRAVGDLGPVYGFQWRHFGA
QYGTCDDDYSGKGIDQLRQVIDTIRNNPSDRRIIMSAWNPLDIPKMALPP
CHCLAQFYVSEKRGELSCQLYQRSADMGLGVPFNIASYALLTHMIAHVTG
LKPGDFVHTMGDTHVYLNHVEPLKEQLERTPRPFPKLIIKRQVQDIEDFR
FEDFQIVDYNPHPKIQMDMAVASFLDH
BO12178.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ts-PB | 321 | CG3181-PB | 1..321 | 1..321 | 1718 | 100 | Plus |
| Ts-PA | 321 | CG3181-PA | 1..321 | 1..321 | 1718 | 100 | Plus |
