Clone BO12180 Report

Search the DGRC for BO12180

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG11396-RA
Protein status:BO12180.pep: validated full length
Sequenced Size:1486

Clone Sequence Records

BO12180.5prime Sequence

824 bp (823 high quality bases) assembled on 2006-04-20

> BO12180.5prime
GAAGTTATCAGTCGACATGTCACACAAAATAAGCGAATATTTCGCAAATG
ATCCGCCCAGTTTCTTCGATGAGCTGGCCAGCAAACCCAAGGGCAACAAC
TTGTCAACAGAAGGGAGTTCCAGCAGCGCCAGTAGCACCAGTTCCGCCCC
AAACATGATGTCCAACACCTTCGTCGGGTTCTTCCAACCTCCTGAATATG
TTGAGACACCTGAGGCAGGAGAGGATTCTATAAAAGTCGGTGACGACGTA
AGAAATCTGTGGGAGTTGCCGCGGGAAAACGAGCCCGGTAAACTTATTAT
GCCGGGCATCCATCTGCAAACTGACTTGGCAGATCCCATCAGCGTGGCGG
TGACTCAACACCTCGGAGAGGCCGAGTTGTCCTACCGCAAGATCCTTCGC
GTCGATGATGTCACCCAGGACGAGCGCGGCTTGAGAACACTAATCCACGC
CGGTTGCTATCGCACTGCCGTGAATCTTACGGGCCGTCTTCTGACCATTT
ACGGTCAGGGTTACGGGCGATCTGGTCAGCCAGCAAAGCATTCGCCCCAC
TCCCTGCAACTGTGGTTCACGCGCCTCGCGCTGCTTGCCAAGTTGGGCGA
GTTTGAGCTGCTGAATGCCGAGGCAGAACCTTTTGGCCAACTTACCAGCC
CCGATGTCTTCTACGACTTCTATCCGGAGATGTACAACGGGAAAAGTGGA
TCCATAGCCTGTTTTTCCTTCCGGCTCTTGCTTGCAGAGCTGCCCATATA
TCTGGGTAAACCCCATGTCGCCCTGGACAGACTTTCAGAACTTCATGTGA
CCACGCGGGAAATCAAGGAGCACT

BO12180.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG11396-PA 1455 CG11396-RA 1..808 17..824 4040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11396-RA 1601 CG11396-RA 33..843 14..824 4055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 01:52:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20787218..20787714 824..328 2485 100 Minus
3L 28110227 3L 20787790..20788105 329..14 1580 100 Minus
Blast to na_te.dros performed on 2015-02-10 01:52:53 has no hits.

BO12180.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:34 Download gff for BO12180.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11396-PA 1..808 17..824 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:19 Download gff for BO12180.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11396-PA 1..808 17..824 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:35:34 Download gff for BO12180.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11396-RA 33..843 14..824 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:03:53 Download gff for BO12180.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11396-RA 33..843 14..824 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:03:53 Download gff for BO12180.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20787218..20787713 329..824 100 <- Minus
3L 20787791..20788105 14..328 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:35:34 Download gff for BO12180.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20780318..20780813 329..824 100 <- Minus
arm_3L 20780891..20781205 14..328 100   Minus

BO12180.3prime Sequence

865 bp (791 high quality bases) assembled on 2006-04-20

> BO12180.3prime
ATGGTCTAGAAAGCTTGCATTTATCGTCTGCAATTTTAGACAAATTTCTA
TGCTTATGTTGAGATCCGGTTTGTATCTGTTAATTAGGCGCAGTAAGTTG
TACTTTTTCGCCTTGGAGTTGTTTGATTCCAGTTCATACAGCGTCGAGAG
ATTGACCAGCAAACTCTCGTTGAGGGACTTCTGGGGATTCAGGTTGATAG
CGCGCTCGTACAGATTTATAGCATCCTTTAGCTTTCCGGCGTAGAGAAGG
CACACTCCCATGTTGTTCAGGATCATTGTGTTGCCGGTGTCCAGGTGCAG
AGCTTTCTGGAATATCACATAGGCCTCGGGAAAGTCGTTCTTGGCCACAG
CTATTAATCCCTTATCGACCAAGTCTCTGAGATCAGGCGCGGAGTTTATC
TCCCTTAATCTCCTCGAGACGGCAATCTTCTGCTCCGCTCCAAATATGTC
ACCAATTTGCAGATAAATGCGGCCCCAAGCGGAGTACAAGGATCGCCGAT
CCTCCTTGCTCAGGTTGGAGCGCTTTAAAAGCGTTCCCTCCATTATGTCG
TCTATCATACTGAATTTCTTCATCATCAATCCACAGTTGATGATTGAATG
CAAAACCCGTTCGCATCGCCTTTGCCAAAACTCCTCTGCCGCCTTGTTGT
GCAGACTTAAATAGTGCTCCTTGATTTCCCGCGTGGTCACATGAAGTTCT
GAAAGTCTGTCCAGGGCGACATGGGGTTTACCCAGATATATGGGCAGCTC
TGCAAGCAAGAGCCGGAAGGAAAAACAGGCTATGGATCCACTTTTCCCGT
TGTACATCTCCGGATAGAAGTCGTAGAAGACATCGGGGCTGGGAAGTTGG
CCAAAAGGTTCTGCC

BO12180.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11396-PA 1455 CG11396-RA 606..1452 865..19 4210 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11396-RA 1601 CG11396-RA 641..1487 865..19 4220 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:03:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20786454..20786832 19..397 1895 100 Plus
3L 28110227 3L 20787129..20787420 574..865 1445 99.7 Plus
3L 28110227 3L 20786889..20787065 398..574 885 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:03:14 has no hits.

BO12180.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:33 Download gff for BO12180.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11396-PA 606..1455 15..865 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:17 Download gff for BO12180.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11396-PA 606..1455 15..865 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:45:51 Download gff for BO12180.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11396-RA 641..1492 14..865 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:03:36 Download gff for BO12180.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11396-RA 641..1492 14..865 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:03:36 Download gff for BO12180.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20786449..20786832 14..397 99 <- Plus
3L 20786889..20787064 398..573 100 <- Plus
3L 20787129..20787420 574..865 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:45:51 Download gff for BO12180.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20779549..20779932 14..397 99 <- Plus
arm_3L 20779989..20780164 398..573 100 <- Plus
arm_3L 20780229..20780520 574..865 99   Plus

BO12180.complete Sequence

1486 bp assembled on 2006-10-11

GenBank Submission: FJ632344

> BO12180.complete
GAAGTTATCAGTCGACATGTCACACAAAATAAGCGAATATTTCGCAAATG
ATCCGCCCAGTTTCTTCGATGAGCTGGCCAGCAAACCCAAGGGCAACAAC
TTGTCAACAGAAGGGAGTTCCAGCAGCGCCAGTAGCACCAGTTCCGCCCC
AAACATGATGTCCAACACCTTCGTCGGGTTCTTCCAACCTCCTGAATATG
TTGAGACACCTGAGGCAGGAGAGGATTCTATAAAAGTCGGTGACGACGTA
AGAAATCTGTGGGAGTTGCCGCGGGAAAACGAGCCCGGTAAACTTATTAT
GCCGGGCATCCATCTGCAAACTGACTTGGCAGATCCCATCAGCGTGGCGG
TGACTCAACACCTCGGAGAGGCCGAGTTGTCCTACCGCAAGATCCTTCGC
GTCGATGATGTCACCCAGGACGAGCGCGGCTTGAGAACACTAATCCACGC
CGGTTGCTATCGCACTGCCGTGAATCTTACGGGCCGTCTTCTGACCATTT
ACGGTCAGGGTTACGGGCGATCTGGTCAGCCAGCAAAGCATTCGCCCCAC
TCCCTGCAACTGTGGTTCACGCGCCTCGCGCTGCTTGCCAAGTTGGGCGA
GTTTGAGCTGCTGAATGCCGAGGCAGAACCTTTTGGCCAACTTACCAGCC
CCGATGTCTTCTACGACTTCTATCCGGAGATGTACAACGGGAAAAGTGGA
TCCATAGCCTGTTTTTCCTTCCGGCTCTTGCTTGCAGAGCTGCCCATATA
TCTGGGTAAACCCCATGTCGCCCTGGACAGACTTTCAGAACTTCATGTGA
CCACGCGGGAAATCAAGGAGCACTATTTAAGTCTGCACAACAAGGCGGCA
GAGGAGTTTTGGCAAAGGCGATGCGAACGGGTTTTGCATTCAATCATCAA
CTGTGGATTGATGATGAAGAAATTCAGTATGATAGACGACATAATGGAGG
GAACGCTTTTAAAGCGCTCCAACCTGAGCAAGGAGGATCGGCGATCCTTG
TACTCCGCTTGGGGCCGCATTTATCTGCAAATTGGTGACATATTTGGAGC
GGAGCAGAAGATTGCCGTCTCGAGGAGATTAAGGGAGATAAACTCCGCGC
CTGATCTCAGAGACTTGGTCGATAAGGGATTAATAGCTGTGGCCAAGAAC
GACTTTCCCGAGGCCTATGTGATATTCCAGAAAGCTCTGCACCTGGACAC
CGGCAACACAATGATCCTGAACAACATGGGAGTGTGCCTTCTCTACGCCG
GAAAGCTAAAGGATGCTATAAATCTGTACGAGCGCGCTATCAACCTGAAT
CCCCAGAAGTCCCTCAACGAGAGTTTGCTGGTCAATCTCTCGACGCTGTA
TGAACTGGAATCAAACAACTCCAAGGCGAAAAAGTACAACTTACTGCGCC
TAATTAACAGATACAAACCGGATCTCAACATAAGCATAGAAATTTGTCTA
AAATTGCAGACGATAAATGCAAGCTTTCTAGACCAT

BO12180.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11396-RA 1455 CG11396-PA 1..1452 17..1468 7260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11396-RA 1601 CG11396-RA 33..1487 14..1468 7275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20787129..20787714 913..328 2930 100 Minus
3L 28110227 3L 20786454..20786832 1468..1090 1895 100 Minus
3L 28110227 3L 20787790..20788105 329..14 1580 100 Minus
3L 28110227 3L 20786889..20787065 1089..913 885 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:58:53 has no hits.

BO12180.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:20 Download gff for BO12180.complete
Subject Subject Range Query Range Percent Splice Strand
CG11396-RA 1..1455 17..1472 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:01 Download gff for BO12180.complete
Subject Subject Range Query Range Percent Splice Strand
CG11396-RA 30..1489 14..1473 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:49 Download gff for BO12180.complete
Subject Subject Range Query Range Percent Splice Strand
CG11396-RA 36..1487 17..1470 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:20 Download gff for BO12180.complete
Subject Subject Range Query Range Percent Splice Strand
CG11396-RA 30..1489 14..1473 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:18 Download gff for BO12180.complete
Subject Subject Range Query Range Percent Splice Strand
CG11396-RA 36..1487 17..1470 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:18 Download gff for BO12180.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20786452..20786832 1090..1470 99 <- Minus
3L 20786889..20787064 914..1089 100 <- Minus
3L 20787129..20787713 329..913 100 <- Minus
3L 20787791..20788102 17..328 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:49 Download gff for BO12180.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20779552..20779932 1090..1470 99 <- Minus
arm_3L 20779989..20780164 914..1089 100 <- Minus
arm_3L 20780229..20780813 329..913 100 <- Minus
arm_3L 20780891..20781202 17..328 100   Minus

BO12180.pep Sequence

Translation from 16 to 1486

> BO12180.pep
MSHKISEYFANDPPSFFDELASKPKGNNLSTEGSSSSASSTSSAPNMMSN
TFVGFFQPPEYVETPEAGEDSIKVGDDVRNLWELPRENEPGKLIMPGIHL
QTDLADPISVAVTQHLGEAELSYRKILRVDDVTQDERGLRTLIHAGCYRT
AVNLTGRLLTIYGQGYGRSGQPAKHSPHSLQLWFTRLALLAKLGEFELLN
AEAEPFGQLTSPDVFYDFYPEMYNGKSGSIACFSFRLLLAELPIYLGKPH
VALDRLSELHVTTREIKEHYLSLHNKAAEEFWQRRCERVLHSIINCGLMM
KKFSMIDDIMEGTLLKRSNLSKEDRRSLYSAWGRIYLQIGDIFGAEQKIA
VSRRLREINSAPDLRDLVDKGLIAVAKNDFPEAYVIFQKALHLDTGNTMI
LNNMGVCLLYAGKLKDAINLYERAINLNPQKSLNESLLVNLSTLYELESN
NSKAKKYNLLRLINRYKPDLNISIEICLKLQTINASFLDH

BO12180.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG11396-PA 484 CG11396-PA 1..484 1..484 2500 100 Plus