Clone Sequence Records
BO12180.5prime Sequence
824 bp (823 high quality bases) assembled on 2006-04-20
> BO12180.5prime
GAAGTTATCAGTCGACATGTCACACAAAATAAGCGAATATTTCGCAAATG
ATCCGCCCAGTTTCTTCGATGAGCTGGCCAGCAAACCCAAGGGCAACAAC
TTGTCAACAGAAGGGAGTTCCAGCAGCGCCAGTAGCACCAGTTCCGCCCC
AAACATGATGTCCAACACCTTCGTCGGGTTCTTCCAACCTCCTGAATATG
TTGAGACACCTGAGGCAGGAGAGGATTCTATAAAAGTCGGTGACGACGTA
AGAAATCTGTGGGAGTTGCCGCGGGAAAACGAGCCCGGTAAACTTATTAT
GCCGGGCATCCATCTGCAAACTGACTTGGCAGATCCCATCAGCGTGGCGG
TGACTCAACACCTCGGAGAGGCCGAGTTGTCCTACCGCAAGATCCTTCGC
GTCGATGATGTCACCCAGGACGAGCGCGGCTTGAGAACACTAATCCACGC
CGGTTGCTATCGCACTGCCGTGAATCTTACGGGCCGTCTTCTGACCATTT
ACGGTCAGGGTTACGGGCGATCTGGTCAGCCAGCAAAGCATTCGCCCCAC
TCCCTGCAACTGTGGTTCACGCGCCTCGCGCTGCTTGCCAAGTTGGGCGA
GTTTGAGCTGCTGAATGCCGAGGCAGAACCTTTTGGCCAACTTACCAGCC
CCGATGTCTTCTACGACTTCTATCCGGAGATGTACAACGGGAAAAGTGGA
TCCATAGCCTGTTTTTCCTTCCGGCTCTTGCTTGCAGAGCTGCCCATATA
TCTGGGTAAACCCCATGTCGCCCTGGACAGACTTTCAGAACTTCATGTGA
CCACGCGGGAAATCAAGGAGCACT
BO12180.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11396-PA | 1455 | CG11396-RA | 1..808 | 17..824 | 4040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:52:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11396-RA | 1601 | CG11396-RA | 33..843 | 14..824 | 4055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 01:52:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20787218..20787714 | 824..328 | 2485 | 100 | Minus |
3L | 28110227 | 3L | 20787790..20788105 | 329..14 | 1580 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 01:52:53 has no hits.
BO12180.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:34 Download gff for
BO12180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11396-PA | 1..808 | 17..824 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:19 Download gff for
BO12180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11396-PA | 1..808 | 17..824 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:35:34 Download gff for
BO12180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11396-RA | 33..843 | 14..824 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:03:53 Download gff for
BO12180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11396-RA | 33..843 | 14..824 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:03:53 Download gff for
BO12180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20787218..20787713 | 329..824 | 100 | <- | Minus |
3L | 20787791..20788105 | 14..328 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:35:34 Download gff for
BO12180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20780318..20780813 | 329..824 | 100 | <- | Minus |
arm_3L | 20780891..20781205 | 14..328 | 100 | | Minus |
BO12180.3prime Sequence
865 bp (791 high quality bases) assembled on 2006-04-20
> BO12180.3prime
ATGGTCTAGAAAGCTTGCATTTATCGTCTGCAATTTTAGACAAATTTCTA
TGCTTATGTTGAGATCCGGTTTGTATCTGTTAATTAGGCGCAGTAAGTTG
TACTTTTTCGCCTTGGAGTTGTTTGATTCCAGTTCATACAGCGTCGAGAG
ATTGACCAGCAAACTCTCGTTGAGGGACTTCTGGGGATTCAGGTTGATAG
CGCGCTCGTACAGATTTATAGCATCCTTTAGCTTTCCGGCGTAGAGAAGG
CACACTCCCATGTTGTTCAGGATCATTGTGTTGCCGGTGTCCAGGTGCAG
AGCTTTCTGGAATATCACATAGGCCTCGGGAAAGTCGTTCTTGGCCACAG
CTATTAATCCCTTATCGACCAAGTCTCTGAGATCAGGCGCGGAGTTTATC
TCCCTTAATCTCCTCGAGACGGCAATCTTCTGCTCCGCTCCAAATATGTC
ACCAATTTGCAGATAAATGCGGCCCCAAGCGGAGTACAAGGATCGCCGAT
CCTCCTTGCTCAGGTTGGAGCGCTTTAAAAGCGTTCCCTCCATTATGTCG
TCTATCATACTGAATTTCTTCATCATCAATCCACAGTTGATGATTGAATG
CAAAACCCGTTCGCATCGCCTTTGCCAAAACTCCTCTGCCGCCTTGTTGT
GCAGACTTAAATAGTGCTCCTTGATTTCCCGCGTGGTCACATGAAGTTCT
GAAAGTCTGTCCAGGGCGACATGGGGTTTACCCAGATATATGGGCAGCTC
TGCAAGCAAGAGCCGGAAGGAAAAACAGGCTATGGATCCACTTTTCCCGT
TGTACATCTCCGGATAGAAGTCGTAGAAGACATCGGGGCTGGGAAGTTGG
CCAAAAGGTTCTGCC
BO12180.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11396-PA | 1455 | CG11396-RA | 606..1452 | 865..19 | 4210 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:03:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11396-RA | 1601 | CG11396-RA | 641..1487 | 865..19 | 4220 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:03:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20786454..20786832 | 19..397 | 1895 | 100 | Plus |
3L | 28110227 | 3L | 20787129..20787420 | 574..865 | 1445 | 99.7 | Plus |
3L | 28110227 | 3L | 20786889..20787065 | 398..574 | 885 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:03:14 has no hits.
BO12180.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:33 Download gff for
BO12180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11396-PA | 606..1455 | 15..865 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:17 Download gff for
BO12180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11396-PA | 606..1455 | 15..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:45:51 Download gff for
BO12180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11396-RA | 641..1492 | 14..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:03:36 Download gff for
BO12180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11396-RA | 641..1492 | 14..865 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:03:36 Download gff for
BO12180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20786449..20786832 | 14..397 | 99 | <- | Plus |
3L | 20786889..20787064 | 398..573 | 100 | <- | Plus |
3L | 20787129..20787420 | 574..865 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:45:51 Download gff for
BO12180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20779549..20779932 | 14..397 | 99 | <- | Plus |
arm_3L | 20779989..20780164 | 398..573 | 100 | <- | Plus |
arm_3L | 20780229..20780520 | 574..865 | 99 | | Plus |
BO12180.complete Sequence
1486 bp assembled on 2006-10-11
GenBank Submission: FJ632344
> BO12180.complete
GAAGTTATCAGTCGACATGTCACACAAAATAAGCGAATATTTCGCAAATG
ATCCGCCCAGTTTCTTCGATGAGCTGGCCAGCAAACCCAAGGGCAACAAC
TTGTCAACAGAAGGGAGTTCCAGCAGCGCCAGTAGCACCAGTTCCGCCCC
AAACATGATGTCCAACACCTTCGTCGGGTTCTTCCAACCTCCTGAATATG
TTGAGACACCTGAGGCAGGAGAGGATTCTATAAAAGTCGGTGACGACGTA
AGAAATCTGTGGGAGTTGCCGCGGGAAAACGAGCCCGGTAAACTTATTAT
GCCGGGCATCCATCTGCAAACTGACTTGGCAGATCCCATCAGCGTGGCGG
TGACTCAACACCTCGGAGAGGCCGAGTTGTCCTACCGCAAGATCCTTCGC
GTCGATGATGTCACCCAGGACGAGCGCGGCTTGAGAACACTAATCCACGC
CGGTTGCTATCGCACTGCCGTGAATCTTACGGGCCGTCTTCTGACCATTT
ACGGTCAGGGTTACGGGCGATCTGGTCAGCCAGCAAAGCATTCGCCCCAC
TCCCTGCAACTGTGGTTCACGCGCCTCGCGCTGCTTGCCAAGTTGGGCGA
GTTTGAGCTGCTGAATGCCGAGGCAGAACCTTTTGGCCAACTTACCAGCC
CCGATGTCTTCTACGACTTCTATCCGGAGATGTACAACGGGAAAAGTGGA
TCCATAGCCTGTTTTTCCTTCCGGCTCTTGCTTGCAGAGCTGCCCATATA
TCTGGGTAAACCCCATGTCGCCCTGGACAGACTTTCAGAACTTCATGTGA
CCACGCGGGAAATCAAGGAGCACTATTTAAGTCTGCACAACAAGGCGGCA
GAGGAGTTTTGGCAAAGGCGATGCGAACGGGTTTTGCATTCAATCATCAA
CTGTGGATTGATGATGAAGAAATTCAGTATGATAGACGACATAATGGAGG
GAACGCTTTTAAAGCGCTCCAACCTGAGCAAGGAGGATCGGCGATCCTTG
TACTCCGCTTGGGGCCGCATTTATCTGCAAATTGGTGACATATTTGGAGC
GGAGCAGAAGATTGCCGTCTCGAGGAGATTAAGGGAGATAAACTCCGCGC
CTGATCTCAGAGACTTGGTCGATAAGGGATTAATAGCTGTGGCCAAGAAC
GACTTTCCCGAGGCCTATGTGATATTCCAGAAAGCTCTGCACCTGGACAC
CGGCAACACAATGATCCTGAACAACATGGGAGTGTGCCTTCTCTACGCCG
GAAAGCTAAAGGATGCTATAAATCTGTACGAGCGCGCTATCAACCTGAAT
CCCCAGAAGTCCCTCAACGAGAGTTTGCTGGTCAATCTCTCGACGCTGTA
TGAACTGGAATCAAACAACTCCAAGGCGAAAAAGTACAACTTACTGCGCC
TAATTAACAGATACAAACCGGATCTCAACATAAGCATAGAAATTTGTCTA
AAATTGCAGACGATAAATGCAAGCTTTCTAGACCAT
BO12180.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11396-RA | 1455 | CG11396-PA | 1..1452 | 17..1468 | 7260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11396-RA | 1601 | CG11396-RA | 33..1487 | 14..1468 | 7275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20787129..20787714 | 913..328 | 2930 | 100 | Minus |
3L | 28110227 | 3L | 20786454..20786832 | 1468..1090 | 1895 | 100 | Minus |
3L | 28110227 | 3L | 20787790..20788105 | 329..14 | 1580 | 100 | Minus |
3L | 28110227 | 3L | 20786889..20787065 | 1089..913 | 885 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:58:53 has no hits.
BO12180.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:20 Download gff for
BO12180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11396-RA | 1..1455 | 17..1472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:01 Download gff for
BO12180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11396-RA | 30..1489 | 14..1473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:49 Download gff for
BO12180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11396-RA | 36..1487 | 17..1470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:20 Download gff for
BO12180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11396-RA | 30..1489 | 14..1473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:18 Download gff for
BO12180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11396-RA | 36..1487 | 17..1470 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:18 Download gff for
BO12180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20786452..20786832 | 1090..1470 | 99 | <- | Minus |
3L | 20786889..20787064 | 914..1089 | 100 | <- | Minus |
3L | 20787129..20787713 | 329..913 | 100 | <- | Minus |
3L | 20787791..20788102 | 17..328 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:49 Download gff for
BO12180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20779552..20779932 | 1090..1470 | 99 | <- | Minus |
arm_3L | 20779989..20780164 | 914..1089 | 100 | <- | Minus |
arm_3L | 20780229..20780813 | 329..913 | 100 | <- | Minus |
arm_3L | 20780891..20781202 | 17..328 | 100 | | Minus |
BO12180.pep Sequence
Translation from 16 to 1486
> BO12180.pep
MSHKISEYFANDPPSFFDELASKPKGNNLSTEGSSSSASSTSSAPNMMSN
TFVGFFQPPEYVETPEAGEDSIKVGDDVRNLWELPRENEPGKLIMPGIHL
QTDLADPISVAVTQHLGEAELSYRKILRVDDVTQDERGLRTLIHAGCYRT
AVNLTGRLLTIYGQGYGRSGQPAKHSPHSLQLWFTRLALLAKLGEFELLN
AEAEPFGQLTSPDVFYDFYPEMYNGKSGSIACFSFRLLLAELPIYLGKPH
VALDRLSELHVTTREIKEHYLSLHNKAAEEFWQRRCERVLHSIINCGLMM
KKFSMIDDIMEGTLLKRSNLSKEDRRSLYSAWGRIYLQIGDIFGAEQKIA
VSRRLREINSAPDLRDLVDKGLIAVAKNDFPEAYVIFQKALHLDTGNTMI
LNNMGVCLLYAGKLKDAINLYERAINLNPQKSLNESLLVNLSTLYELESN
NSKAKKYNLLRLINRYKPDLNISIEICLKLQTINASFLDH
BO12180.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11396-PA | 484 | CG11396-PA | 1..484 | 1..484 | 2500 | 100 | Plus |