Clone BO12181 Report

Search the DGRC for BO12181

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG17493-RA
Protein status:BO12181.pep:
Sequenced Size:859

Clone Sequence Records

BO12181.3prime Sequence

857 bp (784 high quality bases) assembled on 2006-04-20

> BO12181.3prime
ATGGTCTAGAAAGCTTGCATACAAACTAGTCTTCTTCATGATTCGCAGAA
ATTCTTCTTGATTTACCTCCCCGTCATTGTCCAAATCGGCTTCGTCTATC
ATCTCTCGCAGTTCCTCGTCAGTAAGTGTTTCACCAAGTTCACGAGCCAC
CCTCTTTAGATTTCTGAATGAAATTTTTCCAGTGTCATCATCATCAAAAA
GCCGAAAAGCCTTAAGAATCTCTTCCTTAGTGTCCTTTTCGGCCATCTTT
ATAGTCATCAGTTGCAGAAAGACGTTAAACGCAATGCGCCCACTGCAGTC
CTTGTCAATGTCGGAAATCATCCTCTTAATCTCCTCCTTTTTTGGCTCGA
ATCCCAGAGCCCTAATGGCCACCTTAAGTTCCTTTACCTCAATGTAACCC
GTGCCTTCGTTGTCAAATAGATCAAAGGCCTCCTTAATGTCGCATTTTTG
GGCCTCAGACAGTTCGAACTTGGGGCCAGACTTCTTGCGACCTTGTTGCG
TACCCCTTTTGGCAGGAACTGTAGCAGGGTTGGCGTTGCCAGCCGCAGTT
GAGTTTTGCTCCATTAATCGATTGGGTAATTTCAGATGTTGGTATAAGTT
CTTGATATACGTCGCATAGACTATACGAGTGAGGGTTGATTTGTCGGATG
CTCCTATTTTTGTTATAATATATATAAACATGAAGAGCTCTACACAGCCC
ACCCTATTCCTAGCGCAACACACAAGTTTACGGTTCACGATTACAAGAAA
GCCATATCTTTCGTTTGTGAAACAGCTCAAATAAAGCCGACTAGAATGCC
AGAAAAACACAATGTTTAAGGCCTGTTCACACTTGTGAAACATGTCGACT
GATAACT

BO12181.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG17493-PA 828 CG17493-RA 1..825 843..19 4125 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG17493-RB 1663 CG17493-RB 158..982 843..19 4125 100 Minus
CG17493-RD 5997 CG17493-RD 1..806 824..19 4030 100 Minus
CG17493-RC 1364 CG17493-RC 1..806 824..19 4030 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22550548..22551104 575..19 2785 100 Minus
2L 23513712 2L 22550221..22550488 843..576 1340 100 Minus
2L 23513712 2L 18208799..18209013 227..441 190 72.6 Plus
Blast to na_te.dros performed on 2015-02-10 16:37:46 has no hits.

BO12181.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:40:38 Download gff for BO12181.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17493-PA 1..828 15..843 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:29:27 Download gff for BO12181.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17493-RB 152..987 14..849 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:34 Download gff for BO12181.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17493-RB 152..987 14..849 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:34 Download gff for BO12181.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 22550215..22550488 576..849 98 -> Minus
2L 22550548..22551109 14..575 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:29:27 Download gff for BO12181.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22442947..22443220 576..849 98 -> Minus
arm_2L 22443280..22443841 14..575 99   Minus

BO12181.5prime Sequence

857 bp (800 high quality bases) assembled on 2006-04-20

> BO12181.5prime
GAAGTTATCAGTCGACATGTTTCACAAGTGTGAACAGGCCTTAAACATTG
TGTTTTTCTGGCATTCTAGTCGGCTTTATTTGAGCTGTTTCACAAACGAA
AGATATGGCTTTCTTGTAATCGTGAACCGTAAACTTGTGTGTTGCGCTAG
GAATAGGGTGGGCTGTGTAGAGCTCTTCATGTTTATATATATTATAACAA
AAATAGGAGCATCCGACAAATCAACCCTCACTCGTATAGTCTATGCGACG
TATATCAAGAACTTATACCAACATCTGAAATTACCCAATCGATTAATGGA
GCAAAACTCAACTGCGGCTGGCAACGCCAACCCTGCTACAGTTCCTGCCA
AAAGGGGTACGCAACAAGGTCGCAAGAAGTCTGGCCCCAAGTTCGAACTG
TCTGAGGCCCAAAAATGCGACATTAAGGAGGCCTTTGATCTATTTGACAA
CGAAGGCACGGGTTACATTGAGGTAAAGGAACTTAAGGTGGCCATTAGGG
CTCTGGGATTCGAGCCAAAAAAGGAGGAGATTAAGAGGATGATTTCCGAC
ATTGACAAGGACTGCAGTGGGCGCATTGCGTTTAACGTCTTTCTGCAACT
GATGACTATAAAGATGGCCGAAAAGGACACTAAGGAAGAGATTCTTAAGG
CTTTTCGGCTTTTTGATGATGATGACACTGGAAAAATTTCATTCAGAAAT
CTAAAGAGGGTGGCTCGTGAACTTGGTGAAACACTTACTGACGAGGAACT
GCGAGAGATGATAGACGAAGCCGATTTGGACAATGACGGGGAGGTAAATC
AAGAAGAATTTCTGCGAATCATGAAGAAGACTAGTTTGTATGCAAGCTTT
CTAGACC

BO12181.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG17493-PA 828 CG17493-RA 1..825 17..841 4125 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG17493-RB 1663 CG17493-RB 158..982 17..841 4125 100 Plus
CG17493-RD 5997 CG17493-RD 1..806 36..841 4030 100 Plus
CG17493-RC 1364 CG17493-RC 1..806 36..841 4030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22550548..22551104 285..841 2785 100 Plus
2L 23513712 2L 22550221..22550488 17..284 1340 100 Plus
2L 23513712 2L 18208799..18209013 633..419 190 72.6 Minus
Blast to na_te.dros performed on 2015-02-12 04:34:56 has no hits.

BO12181.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:40:38 Download gff for BO12181.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17493-PA 1..828 17..845 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:50:34 Download gff for BO12181.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17493-RB 152..987 11..846 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:39 Download gff for BO12181.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17493-RB 152..987 11..846 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:39 Download gff for BO12181.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 22550215..22550488 11..284 98 -> Plus
2L 22550548..22551109 285..846 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:50:34 Download gff for BO12181.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22442947..22443220 11..284 98 -> Plus
arm_2L 22443280..22443841 285..846 99   Plus

BO12181.complete Sequence

859 bp assembled on 2006-10-11

GenBank Submission: FJ632345

> BO12181.complete
GAAGTTATCAGTCGACATGTTTCACAAGTGTGAACAGGCCTTAAACATTG
TGTTTTTCTGGCATTCTAGTCGGCTTTATTTGAGCTGTTTCACAAACGAA
AGATATGGCTTTCTTGTAATCGTGAACCGTAAACTTGTGTGTTGCGCTAG
GAATAGGGTGGGCTGTGTAGAGCTCTTCATGTTTATATATATTATAACAA
AAATAGGAGCATCCGACAAATCAACCCTCACTCGTATAGTCTATGCGACG
TATATCAAGAACTTATACCAACATCTGAAATTACCCAATCGATTAATGGA
GCAAAACTCAACTGCGGCTGGCAACGCCAACCCTGCTACAGTTCCTGCCA
AAAGGGGTACGCAACAAGGTCGCAAGAAGTCTGGCCCCAAGTTCGAACTG
TCTGAGGCCCAAAAATGCGACATTAAGGAGGCCTTTGATCTATTTGACAA
CGAAGGCACGGGTTACATTGAGGTAAAGGAACTTAAGGTGGCCATTAGGG
CTCTGGGATTCGAGCCAAAAAAGGAGGAGATTAAGAGGATGATTTCCGAC
ATTGACAAGGACTGCAGTGGGCGCATTGCGTTTAACGTCTTTCTGCAACT
GATGACTATAAAGATGGCCGAAAAGGACACTAAGGAAGAGATTCTTAAGG
CTTTTCGGCTTTTTGATGATGATGACACTGGAAAAATTTCATTCAGAAAT
CTAAAGAGGGTGGCTCGTGAACTTGGTGAAACACTTACTGACGAGGAACT
GCGAGAGATGATAGACGAAGCCGATTTGGACAATGACGGGGAGGTAAATC
AAGAAGAATTTCTGCGAATCATGAAGAAGACTAGTTTGTATGCAAGCTTT
CTAGACCAT

BO12181.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG17493-RD 549 CG17493-PD 1..546 296..841 2730 100 Plus
CG17493-RC 549 CG17493-PC 1..546 296..841 2730 100 Plus
CG17493-RB 549 CG17493-PB 1..546 296..841 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG17493-RB 1663 CG17493-RB 158..982 17..841 4125 100 Plus
CG17493-RD 5997 CG17493-RD 1..806 36..841 4030 100 Plus
CG17493-RC 1364 CG17493-RC 1..806 36..841 4030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22550548..22551104 285..841 2785 100 Plus
2L 23513712 2L 22550221..22550488 17..284 1340 100 Plus
2L 23513712 2L 18208799..18209013 633..419 190 72.6 Minus
Blast to na_te.dros performed on 2014-11-27 07:42:52 has no hits.

BO12181.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:04 Download gff for BO12181.complete
Subject Subject Range Query Range Percent Splice Strand
CG17493-RA 1..828 17..845 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:41 Download gff for BO12181.complete
Subject Subject Range Query Range Percent Splice Strand
CG17493-RA 102..937 11..846 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:21:04 Download gff for BO12181.complete
Subject Subject Range Query Range Percent Splice Strand
CG17493-RB 164..982 23..843 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:04 Download gff for BO12181.complete
Subject Subject Range Query Range Percent Splice Strand
CG17493-RA 102..937 11..846 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:40 Download gff for BO12181.complete
Subject Subject Range Query Range Percent Splice Strand
CG17493-RB 164..982 23..843 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:40 Download gff for BO12181.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22550227..22550488 23..284 100 -> Plus
2L 22550548..22551104 285..843 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:21:04 Download gff for BO12181.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22442959..22443220 23..284 100 -> Plus
arm_2L 22443280..22443836 285..843 99   Plus

BO12181.pep Sequence

Translation from 16 to 859

> BO12181.pep
MFHKCEQALNIVFFWHSSRLYLSCFTNERYGFLVIVNRKLVCCARNRVGC
VELFMFIYIITKIGASDKSTLTRIVYATYIKNLYQHLKLPNRLMEQNSTA
AGNANPATVPAKRGTQQGRKKSGPKFELSEAQKCDIKEAFDLFDNEGTGY
IEVKELKVAIRALGFEPKKEEIKRMISDIDKDCSGRIAFNVFLQLMTIKM
AEKDTKEEILKAFRLFDDDDTGKISFRNLKRVARELGETLTDEELREMID
EADLDNDGEVNQEEFLRIMKKTSLYASFLDH

BO12181.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17493-PD 182 CG17493-PD 1..182 94..275 921 100 Plus
CG17493-PC 182 CG17493-PC 1..182 94..275 921 100 Plus
CG17493-PB 182 CG17493-PB 1..182 94..275 921 100 Plus
CG31802-PA 186 CG31802-PA 5..185 92..274 547 60.7 Plus
Cam-PD 149 CG8472-PD 4..146 127..269 346 49.7 Plus