Clone Sequence Records
BO12181.3prime Sequence
857 bp (784 high quality bases) assembled on 2006-04-20
> BO12181.3prime
ATGGTCTAGAAAGCTTGCATACAAACTAGTCTTCTTCATGATTCGCAGAA
ATTCTTCTTGATTTACCTCCCCGTCATTGTCCAAATCGGCTTCGTCTATC
ATCTCTCGCAGTTCCTCGTCAGTAAGTGTTTCACCAAGTTCACGAGCCAC
CCTCTTTAGATTTCTGAATGAAATTTTTCCAGTGTCATCATCATCAAAAA
GCCGAAAAGCCTTAAGAATCTCTTCCTTAGTGTCCTTTTCGGCCATCTTT
ATAGTCATCAGTTGCAGAAAGACGTTAAACGCAATGCGCCCACTGCAGTC
CTTGTCAATGTCGGAAATCATCCTCTTAATCTCCTCCTTTTTTGGCTCGA
ATCCCAGAGCCCTAATGGCCACCTTAAGTTCCTTTACCTCAATGTAACCC
GTGCCTTCGTTGTCAAATAGATCAAAGGCCTCCTTAATGTCGCATTTTTG
GGCCTCAGACAGTTCGAACTTGGGGCCAGACTTCTTGCGACCTTGTTGCG
TACCCCTTTTGGCAGGAACTGTAGCAGGGTTGGCGTTGCCAGCCGCAGTT
GAGTTTTGCTCCATTAATCGATTGGGTAATTTCAGATGTTGGTATAAGTT
CTTGATATACGTCGCATAGACTATACGAGTGAGGGTTGATTTGTCGGATG
CTCCTATTTTTGTTATAATATATATAAACATGAAGAGCTCTACACAGCCC
ACCCTATTCCTAGCGCAACACACAAGTTTACGGTTCACGATTACAAGAAA
GCCATATCTTTCGTTTGTGAAACAGCTCAAATAAAGCCGACTAGAATGCC
AGAAAAACACAATGTTTAAGGCCTGTTCACACTTGTGAAACATGTCGACT
GATAACT
BO12181.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17493-PA | 828 | CG17493-RA | 1..825 | 843..19 | 4125 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:37:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17493-RB | 1663 | CG17493-RB | 158..982 | 843..19 | 4125 | 100 | Minus |
CG17493-RD | 5997 | CG17493-RD | 1..806 | 824..19 | 4030 | 100 | Minus |
CG17493-RC | 1364 | CG17493-RC | 1..806 | 824..19 | 4030 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:37:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22550548..22551104 | 575..19 | 2785 | 100 | Minus |
2L | 23513712 | 2L | 22550221..22550488 | 843..576 | 1340 | 100 | Minus |
2L | 23513712 | 2L | 18208799..18209013 | 227..441 | 190 | 72.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:37:46 has no hits.
BO12181.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:40:38 Download gff for
BO12181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17493-PA | 1..828 | 15..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:29:27 Download gff for
BO12181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17493-RB | 152..987 | 14..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:34 Download gff for
BO12181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17493-RB | 152..987 | 14..849 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:34 Download gff for
BO12181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22550215..22550488 | 576..849 | 98 | -> | Minus |
2L | 22550548..22551109 | 14..575 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:29:27 Download gff for
BO12181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22442947..22443220 | 576..849 | 98 | -> | Minus |
arm_2L | 22443280..22443841 | 14..575 | 99 | | Minus |
BO12181.5prime Sequence
857 bp (800 high quality bases) assembled on 2006-04-20
> BO12181.5prime
GAAGTTATCAGTCGACATGTTTCACAAGTGTGAACAGGCCTTAAACATTG
TGTTTTTCTGGCATTCTAGTCGGCTTTATTTGAGCTGTTTCACAAACGAA
AGATATGGCTTTCTTGTAATCGTGAACCGTAAACTTGTGTGTTGCGCTAG
GAATAGGGTGGGCTGTGTAGAGCTCTTCATGTTTATATATATTATAACAA
AAATAGGAGCATCCGACAAATCAACCCTCACTCGTATAGTCTATGCGACG
TATATCAAGAACTTATACCAACATCTGAAATTACCCAATCGATTAATGGA
GCAAAACTCAACTGCGGCTGGCAACGCCAACCCTGCTACAGTTCCTGCCA
AAAGGGGTACGCAACAAGGTCGCAAGAAGTCTGGCCCCAAGTTCGAACTG
TCTGAGGCCCAAAAATGCGACATTAAGGAGGCCTTTGATCTATTTGACAA
CGAAGGCACGGGTTACATTGAGGTAAAGGAACTTAAGGTGGCCATTAGGG
CTCTGGGATTCGAGCCAAAAAAGGAGGAGATTAAGAGGATGATTTCCGAC
ATTGACAAGGACTGCAGTGGGCGCATTGCGTTTAACGTCTTTCTGCAACT
GATGACTATAAAGATGGCCGAAAAGGACACTAAGGAAGAGATTCTTAAGG
CTTTTCGGCTTTTTGATGATGATGACACTGGAAAAATTTCATTCAGAAAT
CTAAAGAGGGTGGCTCGTGAACTTGGTGAAACACTTACTGACGAGGAACT
GCGAGAGATGATAGACGAAGCCGATTTGGACAATGACGGGGAGGTAAATC
AAGAAGAATTTCTGCGAATCATGAAGAAGACTAGTTTGTATGCAAGCTTT
CTAGACC
BO12181.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17493-PA | 828 | CG17493-RA | 1..825 | 17..841 | 4125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:34:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17493-RB | 1663 | CG17493-RB | 158..982 | 17..841 | 4125 | 100 | Plus |
CG17493-RD | 5997 | CG17493-RD | 1..806 | 36..841 | 4030 | 100 | Plus |
CG17493-RC | 1364 | CG17493-RC | 1..806 | 36..841 | 4030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:34:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22550548..22551104 | 285..841 | 2785 | 100 | Plus |
2L | 23513712 | 2L | 22550221..22550488 | 17..284 | 1340 | 100 | Plus |
2L | 23513712 | 2L | 18208799..18209013 | 633..419 | 190 | 72.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:34:56 has no hits.
BO12181.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:40:38 Download gff for
BO12181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17493-PA | 1..828 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:50:34 Download gff for
BO12181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17493-RB | 152..987 | 11..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:39 Download gff for
BO12181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17493-RB | 152..987 | 11..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:39 Download gff for
BO12181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22550215..22550488 | 11..284 | 98 | -> | Plus |
2L | 22550548..22551109 | 285..846 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:50:34 Download gff for
BO12181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22442947..22443220 | 11..284 | 98 | -> | Plus |
arm_2L | 22443280..22443841 | 285..846 | 99 | | Plus |
BO12181.complete Sequence
859 bp assembled on 2006-10-11
GenBank Submission: FJ632345
> BO12181.complete
GAAGTTATCAGTCGACATGTTTCACAAGTGTGAACAGGCCTTAAACATTG
TGTTTTTCTGGCATTCTAGTCGGCTTTATTTGAGCTGTTTCACAAACGAA
AGATATGGCTTTCTTGTAATCGTGAACCGTAAACTTGTGTGTTGCGCTAG
GAATAGGGTGGGCTGTGTAGAGCTCTTCATGTTTATATATATTATAACAA
AAATAGGAGCATCCGACAAATCAACCCTCACTCGTATAGTCTATGCGACG
TATATCAAGAACTTATACCAACATCTGAAATTACCCAATCGATTAATGGA
GCAAAACTCAACTGCGGCTGGCAACGCCAACCCTGCTACAGTTCCTGCCA
AAAGGGGTACGCAACAAGGTCGCAAGAAGTCTGGCCCCAAGTTCGAACTG
TCTGAGGCCCAAAAATGCGACATTAAGGAGGCCTTTGATCTATTTGACAA
CGAAGGCACGGGTTACATTGAGGTAAAGGAACTTAAGGTGGCCATTAGGG
CTCTGGGATTCGAGCCAAAAAAGGAGGAGATTAAGAGGATGATTTCCGAC
ATTGACAAGGACTGCAGTGGGCGCATTGCGTTTAACGTCTTTCTGCAACT
GATGACTATAAAGATGGCCGAAAAGGACACTAAGGAAGAGATTCTTAAGG
CTTTTCGGCTTTTTGATGATGATGACACTGGAAAAATTTCATTCAGAAAT
CTAAAGAGGGTGGCTCGTGAACTTGGTGAAACACTTACTGACGAGGAACT
GCGAGAGATGATAGACGAAGCCGATTTGGACAATGACGGGGAGGTAAATC
AAGAAGAATTTCTGCGAATCATGAAGAAGACTAGTTTGTATGCAAGCTTT
CTAGACCAT
BO12181.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:42:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17493-RD | 549 | CG17493-PD | 1..546 | 296..841 | 2730 | 100 | Plus |
CG17493-RC | 549 | CG17493-PC | 1..546 | 296..841 | 2730 | 100 | Plus |
CG17493-RB | 549 | CG17493-PB | 1..546 | 296..841 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:42:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17493-RB | 1663 | CG17493-RB | 158..982 | 17..841 | 4125 | 100 | Plus |
CG17493-RD | 5997 | CG17493-RD | 1..806 | 36..841 | 4030 | 100 | Plus |
CG17493-RC | 1364 | CG17493-RC | 1..806 | 36..841 | 4030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:42:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22550548..22551104 | 285..841 | 2785 | 100 | Plus |
2L | 23513712 | 2L | 22550221..22550488 | 17..284 | 1340 | 100 | Plus |
2L | 23513712 | 2L | 18208799..18209013 | 633..419 | 190 | 72.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:42:52 has no hits.
BO12181.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:04 Download gff for
BO12181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17493-RA | 1..828 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:41 Download gff for
BO12181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17493-RA | 102..937 | 11..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:21:04 Download gff for
BO12181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17493-RB | 164..982 | 23..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:04 Download gff for
BO12181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17493-RA | 102..937 | 11..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:40 Download gff for
BO12181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17493-RB | 164..982 | 23..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:40 Download gff for
BO12181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22550227..22550488 | 23..284 | 100 | -> | Plus |
2L | 22550548..22551104 | 285..843 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:21:04 Download gff for
BO12181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22442959..22443220 | 23..284 | 100 | -> | Plus |
arm_2L | 22443280..22443836 | 285..843 | 99 | | Plus |
BO12181.pep Sequence
Translation from 16 to 859
> BO12181.pep
MFHKCEQALNIVFFWHSSRLYLSCFTNERYGFLVIVNRKLVCCARNRVGC
VELFMFIYIITKIGASDKSTLTRIVYATYIKNLYQHLKLPNRLMEQNSTA
AGNANPATVPAKRGTQQGRKKSGPKFELSEAQKCDIKEAFDLFDNEGTGY
IEVKELKVAIRALGFEPKKEEIKRMISDIDKDCSGRIAFNVFLQLMTIKM
AEKDTKEEILKAFRLFDDDDTGKISFRNLKRVARELGETLTDEELREMID
EADLDNDGEVNQEEFLRIMKKTSLYASFLDH
BO12181.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:17:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17493-PD | 182 | CG17493-PD | 1..182 | 94..275 | 921 | 100 | Plus |
CG17493-PC | 182 | CG17493-PC | 1..182 | 94..275 | 921 | 100 | Plus |
CG17493-PB | 182 | CG17493-PB | 1..182 | 94..275 | 921 | 100 | Plus |
CG31802-PA | 186 | CG31802-PA | 5..185 | 92..274 | 547 | 60.7 | Plus |
Cam-PD | 149 | CG8472-PD | 4..146 | 127..269 | 346 | 49.7 | Plus |