Clone Sequence Records
BO12183.3prime Sequence
530 bp (529 high quality bases) assembled on 2006-04-20
> BO12183.3prime
ATGGTCTAGAAAGCTTGCGAATATATCGCTGCCCGTCTTTCGAGCGCGTT
GCAAGGCCTCCTCCGGAGTCAGTTGCTCATTGACCGAGGGCTCCTTGGCG
CTGCCGTCCTTCTGCAGTTTTCCCGCCTTGAAATCTTCGATAATCTTCTG
CGAGTAGACGGCGTTGAAGAGATCCAAGCTGGTGAACTCCGACTGGACGA
CGTCCGGCGCCTTATAGGACACGTATGGCTTTAGCTTACAACCGGTCAAA
TCGGGAACTATGATGTCCGGAATTTTCTCGGGAATCTCCACATACTGCCC
GTCGACAAGTATGCCCGTGTCTCGTACACCTCGCTTGTGAATGGCTACCG
GCGGATTGGCCAGTGTTTTCTGGGCTTCCTTTACCACGCGCGTACCGCGC
TTGTTGTATGCGTTAAATTTACGGAAGTTCCGCTTGCCCTCCAGCACGGA
TGAAGTACTGATGGTCCTCTGCTGGCACCTTAGGGCAATGGGCACTACTT
TAATACAATTATTCATGTCGACTGATAACT
BO12183.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12954-PA | 501 | mRpL41-RA | 1..498 | 516..19 | 2490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:28:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL41-RA | 594 | CG12954-RA | 54..551 | 516..19 | 2490 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:28:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15217067..15217564 | 19..516 | 2490 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 19:28:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 3431..3568 | 227..88 | 118 | 55.7 | Minus |
BO12183.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:39 Download gff for
BO12183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12954-PA | 1..501 | 18..516 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:24 Download gff for
BO12183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12954-PA | 1..501 | 18..516 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:55:23 Download gff for
BO12183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL41-RA | 52..551 | 19..519 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:33:03 Download gff for
BO12183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL41-RA | 52..551 | 19..519 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:33:03 Download gff for
BO12183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15217067..15217566 | 19..519 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:55:23 Download gff for
BO12183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11104572..11105071 | 19..519 | 99 | | Plus |
BO12183.5prime Sequence
530 bp (529 high quality bases) assembled on 2006-04-20
> BO12183.5prime
GAAGTTATCAGTCGACATGAATAATTGTATTAAAGTAGTGCCCATTGCCC
TAAGGTGCCAGCAGAGGACCATCAGTACTTCATCCGTGCTGGAGGGCAAG
CGGAACTTCCGTAAATTTAACGCATACAACAAGCGCGGTACGCGCGTGGT
AAAGGAAGCCCAGAAAACACTGGCCAATCCGCCGGTAGCCATTCACAAGC
GAGGTGTACGAGACACGGGCATACTTGTCGACGGGCAGTATGTGGAGATT
CCCGAGAAAATTCCGGACATCATAGTTCCCGATTTGACCGGTTGTAAGCT
AAAGCCATACGTGTCCTATAAGGCGCCGGACGTCGTCCAGTCGGAGTTCA
CCAGCTTGGATCTCTTCAACGCCGTCTACTCGCAGAAGATTATCGAAGAT
TTCAAGGCGGGAAAACTGCAGAAGGACGGCAGCGCCAAGGAGCCCTCGGT
CAATGAGCAACTGACTCCGGAGGAGGCCTTGCAACGCGCTCGAAAGACGG
GCAGCGATATATTCGCAAGCTTTCTAGACC
BO12183.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12954-PA | 501 | mRpL41-RA | 1..498 | 17..514 | 2490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:15:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL41-RA | 594 | CG12954-RA | 54..551 | 17..514 | 2490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:15:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15217067..15217564 | 514..17 | 2490 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 10:15:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 3431..3568 | 306..445 | 118 | 55.7 | Plus |
BO12183.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:40 Download gff for
BO12183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12954-PA | 1..501 | 17..515 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:26 Download gff for
BO12183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12954-PA | 1..501 | 17..515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:54:16 Download gff for
BO12183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL41-RA | 52..551 | 14..514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:05:49 Download gff for
BO12183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL41-RA | 52..551 | 14..514 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:05:49 Download gff for
BO12183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15217067..15217566 | 14..514 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:54:16 Download gff for
BO12183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11104572..11105071 | 14..514 | 99 | | Minus |
BO12183.complete Sequence
532 bp assembled on 2006-10-11
GenBank Submission: FJ632346
> BO12183.complete
GAAGTTATCAGTCGACATGAATAATTGTATTAAAGTAGTGCCCATTGCCC
TAAGGTGCCAGCAGAGGACCATCAGTACTTCATCCGTGCTGGAGGGCAAG
CGGAACTTCCGTAAATTTAACGCATACAACAAGCGCGGTACGCGCGTGGT
AAAGGAAGCCCAGAAAACACTGGCCAATCCGCCGGTAGCCATTCACAAGC
GAGGTGTACGAGACACGGGCATACTTGTCGACGGGCAGTATGTGGAGATT
CCCGAGAAAATTCCGGACATCATAGTTCCCGATTTGACCGGTTGTAAGCT
AAAGCCATACGTGTCCTATAAGGCGCCGGACGTCGTCCAGTCGGAGTTCA
CCAGCTTGGATCTCTTCAACGCCGTCTACTCGCAGAAGATTATCGAAGAT
TTCAAGGCGGGAAAACTGCAGAAGGACGGCAGCGCCAAGGAGCCCTCGGT
CAATGAGCAACTGACTCCGGAGGAGGCCTTGCAACGCGCTCGAAAGACGG
GCAGCGATATATTCGCAAGCTTTCTAGACCAT
BO12183.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:58:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL41-RA | 501 | CG12954-PA | 1..498 | 17..514 | 2490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL41-RA | 594 | CG12954-RA | 54..551 | 17..514 | 2490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15217067..15217564 | 514..17 | 2490 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 15:58:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 3431..3568 | 306..445 | 118 | 55.7 | Plus |
BO12183.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:05 Download gff for
BO12183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL41-RA | 1..501 | 17..515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:42 Download gff for
BO12183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL41-RA | 48..547 | 14..514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:55 Download gff for
BO12183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL41-RA | 54..551 | 17..516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:05 Download gff for
BO12183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL41-RA | 48..547 | 14..514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:18 Download gff for
BO12183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL41-RA | 54..551 | 17..516 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:18 Download gff for
BO12183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15217065..15217564 | 17..516 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:55 Download gff for
BO12183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11104570..11105069 | 17..516 | 99 | | Minus |
BO12183.pep Sequence
Translation from 16 to 532
> BO12183.pep
MNNCIKVVPIALRCQQRTISTSSVLEGKRNFRKFNAYNKRGTRVVKEAQK
TLANPPVAIHKRGVRDTGILVDGQYVEIPEKIPDIIVPDLTGCKLKPYVS
YKAPDVVQSEFTSLDLFNAVYSQKIIEDFKAGKLQKDGSAKEPSVNEQLT
PEEALQRARKTGSDIFASFLDH
BO12183.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL41-PA | 166 | CG12954-PA | 1..166 | 1..166 | 848 | 100 | Plus |