Clone BO12183 Report

Search the DGRC for BO12183

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL41-RA
Protein status:BO12183.pep: validated full length
Sequenced Size:532

Clone Sequence Records

BO12183.3prime Sequence

530 bp (529 high quality bases) assembled on 2006-04-20

> BO12183.3prime
ATGGTCTAGAAAGCTTGCGAATATATCGCTGCCCGTCTTTCGAGCGCGTT
GCAAGGCCTCCTCCGGAGTCAGTTGCTCATTGACCGAGGGCTCCTTGGCG
CTGCCGTCCTTCTGCAGTTTTCCCGCCTTGAAATCTTCGATAATCTTCTG
CGAGTAGACGGCGTTGAAGAGATCCAAGCTGGTGAACTCCGACTGGACGA
CGTCCGGCGCCTTATAGGACACGTATGGCTTTAGCTTACAACCGGTCAAA
TCGGGAACTATGATGTCCGGAATTTTCTCGGGAATCTCCACATACTGCCC
GTCGACAAGTATGCCCGTGTCTCGTACACCTCGCTTGTGAATGGCTACCG
GCGGATTGGCCAGTGTTTTCTGGGCTTCCTTTACCACGCGCGTACCGCGC
TTGTTGTATGCGTTAAATTTACGGAAGTTCCGCTTGCCCTCCAGCACGGA
TGAAGTACTGATGGTCCTCTGCTGGCACCTTAGGGCAATGGGCACTACTT
TAATACAATTATTCATGTCGACTGATAACT

BO12183.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12954-PA 501 mRpL41-RA 1..498 516..19 2490 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL41-RA 594 CG12954-RA 54..551 516..19 2490 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15217067..15217564 19..516 2490 100 Plus
Blast to na_te.dros performed 2015-02-12 19:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 3431..3568 227..88 118 55.7 Minus

BO12183.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:39 Download gff for BO12183.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12954-PA 1..501 18..516 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:24 Download gff for BO12183.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12954-PA 1..501 18..516 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:55:23 Download gff for BO12183.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL41-RA 52..551 19..519 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:33:03 Download gff for BO12183.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL41-RA 52..551 19..519 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:33:03 Download gff for BO12183.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15217067..15217566 19..519 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:55:23 Download gff for BO12183.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11104572..11105071 19..519 99   Plus

BO12183.5prime Sequence

530 bp (529 high quality bases) assembled on 2006-04-20

> BO12183.5prime
GAAGTTATCAGTCGACATGAATAATTGTATTAAAGTAGTGCCCATTGCCC
TAAGGTGCCAGCAGAGGACCATCAGTACTTCATCCGTGCTGGAGGGCAAG
CGGAACTTCCGTAAATTTAACGCATACAACAAGCGCGGTACGCGCGTGGT
AAAGGAAGCCCAGAAAACACTGGCCAATCCGCCGGTAGCCATTCACAAGC
GAGGTGTACGAGACACGGGCATACTTGTCGACGGGCAGTATGTGGAGATT
CCCGAGAAAATTCCGGACATCATAGTTCCCGATTTGACCGGTTGTAAGCT
AAAGCCATACGTGTCCTATAAGGCGCCGGACGTCGTCCAGTCGGAGTTCA
CCAGCTTGGATCTCTTCAACGCCGTCTACTCGCAGAAGATTATCGAAGAT
TTCAAGGCGGGAAAACTGCAGAAGGACGGCAGCGCCAAGGAGCCCTCGGT
CAATGAGCAACTGACTCCGGAGGAGGCCTTGCAACGCGCTCGAAAGACGG
GCAGCGATATATTCGCAAGCTTTCTAGACC

BO12183.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG12954-PA 501 mRpL41-RA 1..498 17..514 2490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:15:29
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL41-RA 594 CG12954-RA 54..551 17..514 2490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15217067..15217564 514..17 2490 100 Minus
Blast to na_te.dros performed 2015-02-11 10:15:26
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 3431..3568 306..445 118 55.7 Plus

BO12183.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:40 Download gff for BO12183.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12954-PA 1..501 17..515 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:26 Download gff for BO12183.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12954-PA 1..501 17..515 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:54:16 Download gff for BO12183.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL41-RA 52..551 14..514 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:05:49 Download gff for BO12183.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL41-RA 52..551 14..514 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:05:49 Download gff for BO12183.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15217067..15217566 14..514 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:54:16 Download gff for BO12183.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11104572..11105071 14..514 99   Minus

BO12183.complete Sequence

532 bp assembled on 2006-10-11

GenBank Submission: FJ632346

> BO12183.complete
GAAGTTATCAGTCGACATGAATAATTGTATTAAAGTAGTGCCCATTGCCC
TAAGGTGCCAGCAGAGGACCATCAGTACTTCATCCGTGCTGGAGGGCAAG
CGGAACTTCCGTAAATTTAACGCATACAACAAGCGCGGTACGCGCGTGGT
AAAGGAAGCCCAGAAAACACTGGCCAATCCGCCGGTAGCCATTCACAAGC
GAGGTGTACGAGACACGGGCATACTTGTCGACGGGCAGTATGTGGAGATT
CCCGAGAAAATTCCGGACATCATAGTTCCCGATTTGACCGGTTGTAAGCT
AAAGCCATACGTGTCCTATAAGGCGCCGGACGTCGTCCAGTCGGAGTTCA
CCAGCTTGGATCTCTTCAACGCCGTCTACTCGCAGAAGATTATCGAAGAT
TTCAAGGCGGGAAAACTGCAGAAGGACGGCAGCGCCAAGGAGCCCTCGGT
CAATGAGCAACTGACTCCGGAGGAGGCCTTGCAACGCGCTCGAAAGACGG
GCAGCGATATATTCGCAAGCTTTCTAGACCAT

BO12183.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL41-RA 501 CG12954-PA 1..498 17..514 2490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL41-RA 594 CG12954-RA 54..551 17..514 2490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15217067..15217564 514..17 2490 100 Minus
Blast to na_te.dros performed 2014-11-27 15:58:37
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 3431..3568 306..445 118 55.7 Plus

BO12183.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:05 Download gff for BO12183.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL41-RA 1..501 17..515 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:42 Download gff for BO12183.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL41-RA 48..547 14..514 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:55 Download gff for BO12183.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL41-RA 54..551 17..516 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:05 Download gff for BO12183.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL41-RA 48..547 14..514 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:18 Download gff for BO12183.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL41-RA 54..551 17..516 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:18 Download gff for BO12183.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15217065..15217564 17..516 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:55 Download gff for BO12183.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11104570..11105069 17..516 99   Minus

BO12183.pep Sequence

Translation from 16 to 532

> BO12183.pep
MNNCIKVVPIALRCQQRTISTSSVLEGKRNFRKFNAYNKRGTRVVKEAQK
TLANPPVAIHKRGVRDTGILVDGQYVEIPEKIPDIIVPDLTGCKLKPYVS
YKAPDVVQSEFTSLDLFNAVYSQKIIEDFKAGKLQKDGSAKEPSVNEQLT
PEEALQRARKTGSDIFASFLDH

BO12183.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL41-PA 166 CG12954-PA 1..166 1..166 848 100 Plus