Clone BO12184 Report

Search the DGRC for BO12184

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptMis12-RA
Protein status:BO12184.pep: validated full length
Sequenced Size:577

Clone Sequence Records

BO12184.3prime Sequence

575 bp (574 high quality bases) assembled on 2006-04-20

> BO12184.3prime
ATGGTCTAGAAAGCTTGCATCAGTCTCCTTCTTTATCTGCAGGGGCACTT
GATTCCAGAATTGCTTCAGCTTGGTGATGTTGAGGGAGGAGCAGCTTCGC
TGCACGCGATCCTGCATTTCGATCTCCTTCTGGATGAGATCCTCCATGGC
GGCGTACTTCTCCTCCTCGATCTTCAAATGCGCCAGCATGGCCATGTTCT
CTCTGTATTTGGCCTTCAGCTCCTCCAACCTGGCTGTCTTCTGCTCCTCC
TCTTCGCTGGTATACTGATTCTCGACGAACATGTGCTCCGGATGCAGCAC
ATGCGGTGGAACGTGGAACACTTTGCTGTCCAGTTCCCTGAGGGCTTTTA
GGCCCTTGGAGGCGGATGCCTGGAAACGACGCTCAACGGTCTCCTTCTCG
GCTTCCAGCAATTCCGCTGTGGCGGGTGTCTTGATCTTGTCGATGATCTG
ACCAATACCCTTCTTAATTATGTCCTGCACAATATGTTCGCGCTCTGCAG
ACAACTGTGCCGCTGTGAAATTGAAGAACTTCTGATCGTAGGCTAGGCTA
TTGAAGTCCATGTCGACTGATAACT

BO12184.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG18156-PA 546 CG18156-RA 1..543 561..19 2715 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
Mis12-RA 839 CG18156-RA 115..657 561..19 2715 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6968509..6968801 199..491 1465 100 Plus
3L 28110227 3L 6968217..6968398 19..200 910 100 Plus
3L 28110227 3L 6968864..6968934 491..561 355 100 Plus
Blast to na_te.dros performed on 2015-02-08 13:23:43 has no hits.

BO12184.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:41 Download gff for BO12184.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18156-PA 1..546 15..561 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:27 Download gff for BO12184.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18156-PA 1..546 15..561 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:45:37 Download gff for BO12184.3prime
Subject Subject Range Query Range Percent Splice Strand
Mis12-RA 110..660 15..570 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:28:00 Download gff for BO12184.3prime
Subject Subject Range Query Range Percent Splice Strand
Mis12-RA 110..660 15..570 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:28:00 Download gff for BO12184.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6968213..6968396 15..198 98 <- Plus
3L 6968509..6968801 199..491 100 <- Plus
3L 6968865..6968939 492..570 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:45:37 Download gff for BO12184.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6961313..6961496 15..198 98 <- Plus
arm_3L 6961609..6961901 199..491 100 <- Plus
arm_3L 6961965..6962039 492..570 94   Plus

BO12184.5prime Sequence

575 bp (574 high quality bases) assembled on 2006-04-20

> BO12184.5prime
GAAGTTATCAGTCGACATGGACTTCAATAGCCTAGCCTACGATCAGAAGT
TCTTCAATTTCACAGCGGCACAGTTGTCTGCAGAGCGCGAACATATTGTG
CAGGACATAATTAAGAAGGGTATTGGTCAGATCATCGACAAGATCAAGAC
ACCCGCCACAGCGGAATTGCTGGAAGCCGAGAAGGAGACCGTTGAGCGTC
GTTTCCAGGCATCCGCCTCCAAGGGCCTAAAAGCCCTCAGGGAACTGGAC
AGCAAAGTGTTCCACGTTCCACCGCATGTGCTGCATCCGGAGCACATGTT
CGTCGAGAATCAGTATACCAGCGAAGAGGAGGAGCAGAAGACAGCCAGGT
TGGAGGAGCTGAAGGCCAAATACAGAGAGAACATGGCCATGCTGGCGCAT
TTGAAGATCGAGGAGGAGAAGTACGCCGCCATGGAGGATCTCATCCAGAA
GGAGATCGAAATGCAGGATCGCGTGCAGCGAAGCTGCTCCTCCCTCAACA
TCACCAAGCTGAAGCAATTCTGGAATCAAGTGCCCCTGCAGATAAAGAAG
GAGACTGATGCAAGCTTTCTAGACC

BO12184.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG18156-PA 546 CG18156-RA 1..543 17..559 2715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
Mis12-RA 839 CG18156-RA 115..657 17..559 2715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6968509..6968801 379..87 1465 100 Minus
3L 28110227 3L 6968217..6968398 559..378 910 100 Minus
3L 28110227 3L 6968864..6968934 87..17 355 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:53:10 has no hits.

BO12184.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:42 Download gff for BO12184.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18156-PA 1..546 17..563 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:29 Download gff for BO12184.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18156-PA 1..546 17..563 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:43:04 Download gff for BO12184.5prime
Subject Subject Range Query Range Percent Splice Strand
Mis12-RA 110..660 8..563 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:26:09 Download gff for BO12184.5prime
Subject Subject Range Query Range Percent Splice Strand
Mis12-RA 110..660 8..563 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:26:09 Download gff for BO12184.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6968509..6968801 87..379 100 <- Minus
3L 6968865..6968939 8..86 94   Minus
3L 6968213..6968396 380..563 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:43:04 Download gff for BO12184.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6961313..6961496 380..563 98 <- Minus
arm_3L 6961609..6961901 87..379 100 <- Minus
arm_3L 6961965..6962039 8..86 94   Minus

BO12184.complete Sequence

577 bp assembled on 2006-10-11

GenBank Submission: FJ632347

> BO12184.complete
GAAGTTATCAGTCGACATGGACTTCAATAGCCTAGCCTACGATCAGAAGT
TCTTCAATTTCACAGCGGCACAGTTGTCTGCAGAGCGCGAACATATTGTG
CAGGACATAATTAAGAAGGGTATTGGTCAGATCATCGACAAGATCAAGAC
ACCCGCCACAGCGGAATTGCTGGAAGCCGAGAAGGAGACCGTTGAGCGTC
GTTTCCAGGCATCCGCCTCCAAGGGCCTAAAAGCCCTCAGGGAACTGGAC
AGCAAAGTGTTCCACGTTCCACCGCATGTGCTGCATCCGGAGCACATGTT
CGTCGAGAATCAGTATACCAGCGAAGAGGAGGAGCAGAAGACAGCCAGGT
TGGAGGAGCTGAAGGCCAAATACAGAGAGAACATGGCCATGCTGGCGCAT
TTGAAGATCGAGGAGGAGAAGTACGCCGCCATGGAGGATCTCATCCAGAA
GGAGATCGAAATGCAGGATCGCGTGCAGCGAAGCTGCTCCTCCCTCAACA
TCACCAAGCTGAAGCAATTCTGGAATCAAGTGCCCCTGCAGATAAAGAAG
GAGACTGATGCAAGCTTTCTAGACCAT

BO12184.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:10:08
Subject Length Description Subject Range Query Range Score Percent Strand
Mis12-RA 546 CG18156-PA 1..543 17..559 2715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:08
Subject Length Description Subject Range Query Range Score Percent Strand
Mis12-RA 839 CG18156-RA 115..657 17..559 2715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6968509..6968801 379..87 1465 100 Minus
3L 28110227 3L 6968217..6968398 559..378 910 100 Minus
3L 28110227 3L 6968864..6968934 87..17 355 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:10:07 has no hits.

BO12184.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:06 Download gff for BO12184.complete
Subject Subject Range Query Range Percent Splice Strand
Mis12-RA 1..546 17..563 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:44 Download gff for BO12184.complete
Subject Subject Range Query Range Percent Splice Strand
Mis12-RA 104..654 8..563 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:34 Download gff for BO12184.complete
Subject Subject Range Query Range Percent Splice Strand
Mis12-RA 115..657 17..561 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:06 Download gff for BO12184.complete
Subject Subject Range Query Range Percent Splice Strand
Mis12-RA 104..654 8..563 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:44 Download gff for BO12184.complete
Subject Subject Range Query Range Percent Splice Strand
Mis12-RA 115..657 17..561 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:44 Download gff for BO12184.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6968215..6968396 380..561 98 <- Minus
3L 6968509..6968801 87..379 100 <- Minus
3L 6968865..6968934 17..86 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:34 Download gff for BO12184.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6961315..6961496 380..561 98 <- Minus
arm_3L 6961609..6961901 87..379 100 <- Minus
arm_3L 6961965..6962034 17..86 100   Minus

BO12184.pep Sequence

Translation from 16 to 577

> BO12184.pep
MDFNSLAYDQKFFNFTAAQLSAEREHIVQDIIKKGIGQIIDKIKTPATAE
LLEAEKETVERRFQASASKGLKALRELDSKVFHVPPHVLHPEHMFVENQY
TSEEEEQKTARLEELKAKYRENMAMLAHLKIEEEKYAAMEDLIQKEIEMQ
DRVQRSCSSLNITKLKQFWNQVPLQIKKETDASFLDH

BO12184.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:58
Subject Length Description Subject Range Query Range Score Percent Strand
Mis12-PA 181 CG18156-PA 1..181 1..181 915 100 Plus