Clone Sequence Records
BO12184.3prime Sequence
575 bp (574 high quality bases) assembled on 2006-04-20
> BO12184.3prime
ATGGTCTAGAAAGCTTGCATCAGTCTCCTTCTTTATCTGCAGGGGCACTT
GATTCCAGAATTGCTTCAGCTTGGTGATGTTGAGGGAGGAGCAGCTTCGC
TGCACGCGATCCTGCATTTCGATCTCCTTCTGGATGAGATCCTCCATGGC
GGCGTACTTCTCCTCCTCGATCTTCAAATGCGCCAGCATGGCCATGTTCT
CTCTGTATTTGGCCTTCAGCTCCTCCAACCTGGCTGTCTTCTGCTCCTCC
TCTTCGCTGGTATACTGATTCTCGACGAACATGTGCTCCGGATGCAGCAC
ATGCGGTGGAACGTGGAACACTTTGCTGTCCAGTTCCCTGAGGGCTTTTA
GGCCCTTGGAGGCGGATGCCTGGAAACGACGCTCAACGGTCTCCTTCTCG
GCTTCCAGCAATTCCGCTGTGGCGGGTGTCTTGATCTTGTCGATGATCTG
ACCAATACCCTTCTTAATTATGTCCTGCACAATATGTTCGCGCTCTGCAG
ACAACTGTGCCGCTGTGAAATTGAAGAACTTCTGATCGTAGGCTAGGCTA
TTGAAGTCCATGTCGACTGATAACT
BO12184.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18156-PA | 546 | CG18156-RA | 1..543 | 561..19 | 2715 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:23:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mis12-RA | 839 | CG18156-RA | 115..657 | 561..19 | 2715 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:23:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6968509..6968801 | 199..491 | 1465 | 100 | Plus |
3L | 28110227 | 3L | 6968217..6968398 | 19..200 | 910 | 100 | Plus |
3L | 28110227 | 3L | 6968864..6968934 | 491..561 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:23:43 has no hits.
BO12184.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:41 Download gff for
BO12184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18156-PA | 1..546 | 15..561 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:27 Download gff for
BO12184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18156-PA | 1..546 | 15..561 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:45:37 Download gff for
BO12184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mis12-RA | 110..660 | 15..570 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:28:00 Download gff for
BO12184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mis12-RA | 110..660 | 15..570 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:28:00 Download gff for
BO12184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6968213..6968396 | 15..198 | 98 | <- | Plus |
3L | 6968509..6968801 | 199..491 | 100 | <- | Plus |
3L | 6968865..6968939 | 492..570 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:45:37 Download gff for
BO12184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6961313..6961496 | 15..198 | 98 | <- | Plus |
arm_3L | 6961609..6961901 | 199..491 | 100 | <- | Plus |
arm_3L | 6961965..6962039 | 492..570 | 94 | | Plus |
BO12184.5prime Sequence
575 bp (574 high quality bases) assembled on 2006-04-20
> BO12184.5prime
GAAGTTATCAGTCGACATGGACTTCAATAGCCTAGCCTACGATCAGAAGT
TCTTCAATTTCACAGCGGCACAGTTGTCTGCAGAGCGCGAACATATTGTG
CAGGACATAATTAAGAAGGGTATTGGTCAGATCATCGACAAGATCAAGAC
ACCCGCCACAGCGGAATTGCTGGAAGCCGAGAAGGAGACCGTTGAGCGTC
GTTTCCAGGCATCCGCCTCCAAGGGCCTAAAAGCCCTCAGGGAACTGGAC
AGCAAAGTGTTCCACGTTCCACCGCATGTGCTGCATCCGGAGCACATGTT
CGTCGAGAATCAGTATACCAGCGAAGAGGAGGAGCAGAAGACAGCCAGGT
TGGAGGAGCTGAAGGCCAAATACAGAGAGAACATGGCCATGCTGGCGCAT
TTGAAGATCGAGGAGGAGAAGTACGCCGCCATGGAGGATCTCATCCAGAA
GGAGATCGAAATGCAGGATCGCGTGCAGCGAAGCTGCTCCTCCCTCAACA
TCACCAAGCTGAAGCAATTCTGGAATCAAGTGCCCCTGCAGATAAAGAAG
GAGACTGATGCAAGCTTTCTAGACC
BO12184.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18156-PA | 546 | CG18156-RA | 1..543 | 17..559 | 2715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:53:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mis12-RA | 839 | CG18156-RA | 115..657 | 17..559 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:53:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6968509..6968801 | 379..87 | 1465 | 100 | Minus |
3L | 28110227 | 3L | 6968217..6968398 | 559..378 | 910 | 100 | Minus |
3L | 28110227 | 3L | 6968864..6968934 | 87..17 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:53:10 has no hits.
BO12184.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:42 Download gff for
BO12184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18156-PA | 1..546 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:29 Download gff for
BO12184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18156-PA | 1..546 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:43:04 Download gff for
BO12184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mis12-RA | 110..660 | 8..563 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:26:09 Download gff for
BO12184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mis12-RA | 110..660 | 8..563 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:26:09 Download gff for
BO12184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6968509..6968801 | 87..379 | 100 | <- | Minus |
3L | 6968865..6968939 | 8..86 | 94 | | Minus |
3L | 6968213..6968396 | 380..563 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:43:04 Download gff for
BO12184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6961313..6961496 | 380..563 | 98 | <- | Minus |
arm_3L | 6961609..6961901 | 87..379 | 100 | <- | Minus |
arm_3L | 6961965..6962039 | 8..86 | 94 | | Minus |
BO12184.complete Sequence
577 bp assembled on 2006-10-11
GenBank Submission: FJ632347
> BO12184.complete
GAAGTTATCAGTCGACATGGACTTCAATAGCCTAGCCTACGATCAGAAGT
TCTTCAATTTCACAGCGGCACAGTTGTCTGCAGAGCGCGAACATATTGTG
CAGGACATAATTAAGAAGGGTATTGGTCAGATCATCGACAAGATCAAGAC
ACCCGCCACAGCGGAATTGCTGGAAGCCGAGAAGGAGACCGTTGAGCGTC
GTTTCCAGGCATCCGCCTCCAAGGGCCTAAAAGCCCTCAGGGAACTGGAC
AGCAAAGTGTTCCACGTTCCACCGCATGTGCTGCATCCGGAGCACATGTT
CGTCGAGAATCAGTATACCAGCGAAGAGGAGGAGCAGAAGACAGCCAGGT
TGGAGGAGCTGAAGGCCAAATACAGAGAGAACATGGCCATGCTGGCGCAT
TTGAAGATCGAGGAGGAGAAGTACGCCGCCATGGAGGATCTCATCCAGAA
GGAGATCGAAATGCAGGATCGCGTGCAGCGAAGCTGCTCCTCCCTCAACA
TCACCAAGCTGAAGCAATTCTGGAATCAAGTGCCCCTGCAGATAAAGAAG
GAGACTGATGCAAGCTTTCTAGACCAT
BO12184.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:10:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mis12-RA | 546 | CG18156-PA | 1..543 | 17..559 | 2715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mis12-RA | 839 | CG18156-RA | 115..657 | 17..559 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:10:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6968509..6968801 | 379..87 | 1465 | 100 | Minus |
3L | 28110227 | 3L | 6968217..6968398 | 559..378 | 910 | 100 | Minus |
3L | 28110227 | 3L | 6968864..6968934 | 87..17 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:10:07 has no hits.
BO12184.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:06 Download gff for
BO12184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mis12-RA | 1..546 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:44 Download gff for
BO12184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mis12-RA | 104..654 | 8..563 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:34 Download gff for
BO12184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mis12-RA | 115..657 | 17..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:06 Download gff for
BO12184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mis12-RA | 104..654 | 8..563 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:44 Download gff for
BO12184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mis12-RA | 115..657 | 17..561 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:44 Download gff for
BO12184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6968215..6968396 | 380..561 | 98 | <- | Minus |
3L | 6968509..6968801 | 87..379 | 100 | <- | Minus |
3L | 6968865..6968934 | 17..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:34 Download gff for
BO12184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6961315..6961496 | 380..561 | 98 | <- | Minus |
arm_3L | 6961609..6961901 | 87..379 | 100 | <- | Minus |
arm_3L | 6961965..6962034 | 17..86 | 100 | | Minus |
BO12184.pep Sequence
Translation from 16 to 577
> BO12184.pep
MDFNSLAYDQKFFNFTAAQLSAEREHIVQDIIKKGIGQIIDKIKTPATAE
LLEAEKETVERRFQASASKGLKALRELDSKVFHVPPHVLHPEHMFVENQY
TSEEEEQKTARLEELKAKYRENMAMLAHLKIEEEKYAAMEDLIQKEIEMQ
DRVQRSCSSLNITKLKQFWNQVPLQIKKETDASFLDH
BO12184.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mis12-PA | 181 | CG18156-PA | 1..181 | 1..181 | 915 | 100 | Plus |