Clone Sequence Records
BO12186.3prime Sequence
395 bp (394 high quality bases) assembled on 2006-04-20
> BO12186.3prime
ATGGTCTAGAAAGCTTGCAGGAGCTTCAGGCGTCTTCAGATTGTACTTGG
CCTTAATGTTGTTCAGTTCCTCCTGTTTCTTGTCCATGTCCACGCGCTTG
AAGGCCTTGTTGGATTGGTAGTAGAGCACCACCAGATAGCGATTGCACAC
ATTAAAACCCGATAAATGGTCACAGGCGTTCTTGGCATCGAAAATGTCCT
CGTAGACGACAAAGGCGGTGCCACGCGTTTCCGGAGTGTTGCCTACGCGT
ATCTGTCGAATGGCTCCAAATTTGCCGAATATGTCGTACATCTCGTCCGA
GGTGATTTTGTACGGCAGGTTCCGCACGTACAATATCCGATTCACCTCTG
GCGGCAGGCGGATATGGTTGCGCTTGTTCATGTCGACTGATAACT
BO12186.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13298-PA | 366 | CG13298-RA | 1..363 | 381..19 | 1790 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:22:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13298-RA | 920 | CG13298-RA | 195..560 | 384..19 | 1815 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:22:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6192484..6192709 | 19..244 | 1130 | 100 | Plus |
3L | 28110227 | 3L | 6192776..6192894 | 245..363 | 580 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:22:53 has no hits.
BO12186.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:45 Download gff for
BO12186.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13298-PA | 1..366 | 18..381 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:34 Download gff for
BO12186.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13298-PA | 1..366 | 18..381 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 15:53:07 Download gff for
BO12186.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13298-RA | 195..560 | 19..384 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:58:40 Download gff for
BO12186.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13298-RA | 195..560 | 19..384 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:58:40 Download gff for
BO12186.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6192484..6192709 | 19..244 | 100 | <- | Plus |
3L | 6192776..6192894 | 245..363 | 99 | <- | Plus |
3L | 6192965..6192985 | 364..384 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:53:07 Download gff for
BO12186.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6185584..6185809 | 19..244 | 100 | <- | Plus |
arm_3L | 6185876..6185994 | 245..363 | 99 | <- | Plus |
arm_3L | 6186065..6186085 | 364..384 | 100 | | Plus |
BO12186.5prime Sequence
395 bp (394 high quality bases) assembled on 2006-04-20
> BO12186.5prime
GAAGTTATCAGTCGACATGAACAAGCGCAACCATATCCGCCTGCCGCCAG
AGGTGAATCGGCTATTGTACGTGCGGAACCTGCCGTACAAAATCACCTCG
GACGAGATGTACGACATATTCGGCAAATTTGGAGCCATTCGACAGATACG
CGTAGGCAACACTCCGGAAACGCGTGGCACCGCCTTTGTCGTCTACGAGG
ACATTTTCGATGCCAAGAACGCCTGTGACCATTTATCGGGTTTTAATGTG
TGCAATCGCTATCTGGTGGTGCTCTACTACCAATCCAACAAGGCCTTCAA
GCGCGTGGACATGGACAAGAAACAGGAGGAACTGAACAACATTAAGGCCA
AGTACAATCTGAAGACGCCTGAAGCTCCTGCAAGCTTTCTAGACC
BO12186.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13298-PA | 366 | CG13298-RA | 1..363 | 17..379 | 1815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:34:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13298-RA | 920 | CG13298-RA | 195..560 | 14..379 | 1830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:34:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6192484..6192709 | 379..154 | 1130 | 100 | Minus |
3L | 28110227 | 3L | 6192776..6192894 | 153..35 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:34:17 has no hits.
BO12186.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:46 Download gff for
BO12186.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13298-PA | 1..366 | 17..380 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:36 Download gff for
BO12186.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13298-PA | 1..366 | 17..380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:43:24 Download gff for
BO12186.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13298-RA | 195..560 | 14..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:02:59 Download gff for
BO12186.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13298-RA | 195..560 | 14..379 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:02:59 Download gff for
BO12186.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6192484..6192709 | 154..379 | 100 | <- | Minus |
3L | 6192776..6192894 | 35..153 | 100 | <- | Minus |
3L | 6192965..6192985 | 14..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:43:24 Download gff for
BO12186.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6185584..6185809 | 154..379 | 100 | <- | Minus |
arm_3L | 6185876..6185994 | 35..153 | 100 | <- | Minus |
arm_3L | 6186065..6186085 | 14..34 | 100 | | Minus |
BO12186.complete Sequence
397 bp assembled on 2006-10-11
GenBank Submission: FJ632348
> BO12186.complete
GAAGTTATCAGTCGACATGAACAAGCGCAACCATATCCGCCTGCCGCCAG
AGGTGAATCGGCTATTGTACGTGCGGAACCTGCCGTACAAAATCACCTCG
GACGAGATGTACGACATATTCGGCAAATTTGGAGCCATTCGACAGATACG
CGTAGGCAACACTCCGGAAACGCGTGGCACCGCCTTTGTCGTCTACGAGG
ACATTTTCGATGCCAAGAACGCCTGTGACCATTTATCGGGTTTTAATGTG
TGCAATCGCTATCTGGTGGTGCTCTACTACCAATCCAACAAGGCCTTCAA
GCGCGTGGACATGGACAAGAAACAGGAGGAACTGAACAACATTAAGGCCA
AGTACAATCTGAAGACGCCTGAAGCTCCTGCAAGCTTTCTAGACCAT
BO12186.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13298-RA | 366 | CG13298-PA | 1..363 | 17..379 | 1815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13298-RA | 920 | CG13298-RA | 195..560 | 14..379 | 1830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:09:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6192484..6192709 | 379..154 | 1130 | 100 | Minus |
3L | 28110227 | 3L | 6192776..6192894 | 153..35 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:09:19 has no hits.
BO12186.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:09 Download gff for
BO12186.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13298-RA | 1..366 | 17..380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:29 Download gff for
BO12186.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13298-RA | 202..567 | 14..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:24 Download gff for
BO12186.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13298-RA | 198..560 | 17..381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:09 Download gff for
BO12186.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13298-RA | 202..567 | 14..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:25 Download gff for
BO12186.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13298-RA | 198..560 | 17..381 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:25 Download gff for
BO12186.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6192482..6192709 | 154..381 | 99 | <- | Minus |
3L | 6192776..6192894 | 35..153 | 100 | <- | Minus |
3L | 6192965..6192982 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:24 Download gff for
BO12186.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6185582..6185809 | 154..381 | 99 | <- | Minus |
arm_3L | 6185876..6185994 | 35..153 | 100 | <- | Minus |
arm_3L | 6186065..6186082 | 17..34 | 100 | | Minus |
BO12186.pep Sequence
Translation from 16 to 397
> BO12186.pep
MNKRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTP
ETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFKRVDMD
KKQEELNNIKAKYNLKTPEAPASFLDH
BO12186.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13298-PA | 121 | CG13298-PA | 1..121 | 1..121 | 642 | 100 | Plus |