Clone BO12186 Report

Search the DGRC for BO12186

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG13298-RA
Protein status:BO12186.pep: validated full length
Sequenced Size:397

Clone Sequence Records

BO12186.3prime Sequence

395 bp (394 high quality bases) assembled on 2006-04-20

> BO12186.3prime
ATGGTCTAGAAAGCTTGCAGGAGCTTCAGGCGTCTTCAGATTGTACTTGG
CCTTAATGTTGTTCAGTTCCTCCTGTTTCTTGTCCATGTCCACGCGCTTG
AAGGCCTTGTTGGATTGGTAGTAGAGCACCACCAGATAGCGATTGCACAC
ATTAAAACCCGATAAATGGTCACAGGCGTTCTTGGCATCGAAAATGTCCT
CGTAGACGACAAAGGCGGTGCCACGCGTTTCCGGAGTGTTGCCTACGCGT
ATCTGTCGAATGGCTCCAAATTTGCCGAATATGTCGTACATCTCGTCCGA
GGTGATTTTGTACGGCAGGTTCCGCACGTACAATATCCGATTCACCTCTG
GCGGCAGGCGGATATGGTTGCGCTTGTTCATGTCGACTGATAACT

BO12186.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13298-PA 366 CG13298-RA 1..363 381..19 1790 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG13298-RA 920 CG13298-RA 195..560 384..19 1815 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6192484..6192709 19..244 1130 100 Plus
3L 28110227 3L 6192776..6192894 245..363 580 99.2 Plus
Blast to na_te.dros performed on 2015-02-13 09:22:53 has no hits.

BO12186.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:45 Download gff for BO12186.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13298-PA 1..366 18..381 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:34 Download gff for BO12186.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13298-PA 1..366 18..381 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 15:53:07 Download gff for BO12186.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13298-RA 195..560 19..384 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:58:40 Download gff for BO12186.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13298-RA 195..560 19..384 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:58:40 Download gff for BO12186.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6192484..6192709 19..244 100 <- Plus
3L 6192776..6192894 245..363 99 <- Plus
3L 6192965..6192985 364..384 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:53:07 Download gff for BO12186.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6185584..6185809 19..244 100 <- Plus
arm_3L 6185876..6185994 245..363 99 <- Plus
arm_3L 6186065..6186085 364..384 100   Plus

BO12186.5prime Sequence

395 bp (394 high quality bases) assembled on 2006-04-20

> BO12186.5prime
GAAGTTATCAGTCGACATGAACAAGCGCAACCATATCCGCCTGCCGCCAG
AGGTGAATCGGCTATTGTACGTGCGGAACCTGCCGTACAAAATCACCTCG
GACGAGATGTACGACATATTCGGCAAATTTGGAGCCATTCGACAGATACG
CGTAGGCAACACTCCGGAAACGCGTGGCACCGCCTTTGTCGTCTACGAGG
ACATTTTCGATGCCAAGAACGCCTGTGACCATTTATCGGGTTTTAATGTG
TGCAATCGCTATCTGGTGGTGCTCTACTACCAATCCAACAAGGCCTTCAA
GCGCGTGGACATGGACAAGAAACAGGAGGAACTGAACAACATTAAGGCCA
AGTACAATCTGAAGACGCCTGAAGCTCCTGCAAGCTTTCTAGACC

BO12186.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13298-PA 366 CG13298-RA 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG13298-RA 920 CG13298-RA 195..560 14..379 1830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6192484..6192709 379..154 1130 100 Minus
3L 28110227 3L 6192776..6192894 153..35 595 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:34:17 has no hits.

BO12186.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:46 Download gff for BO12186.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13298-PA 1..366 17..380 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:36 Download gff for BO12186.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13298-PA 1..366 17..380 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:43:24 Download gff for BO12186.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13298-RA 195..560 14..379 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:02:59 Download gff for BO12186.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13298-RA 195..560 14..379 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:02:59 Download gff for BO12186.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6192484..6192709 154..379 100 <- Minus
3L 6192776..6192894 35..153 100 <- Minus
3L 6192965..6192985 14..34 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:43:24 Download gff for BO12186.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6185584..6185809 154..379 100 <- Minus
arm_3L 6185876..6185994 35..153 100 <- Minus
arm_3L 6186065..6186085 14..34 100   Minus

BO12186.complete Sequence

397 bp assembled on 2006-10-11

GenBank Submission: FJ632348

> BO12186.complete
GAAGTTATCAGTCGACATGAACAAGCGCAACCATATCCGCCTGCCGCCAG
AGGTGAATCGGCTATTGTACGTGCGGAACCTGCCGTACAAAATCACCTCG
GACGAGATGTACGACATATTCGGCAAATTTGGAGCCATTCGACAGATACG
CGTAGGCAACACTCCGGAAACGCGTGGCACCGCCTTTGTCGTCTACGAGG
ACATTTTCGATGCCAAGAACGCCTGTGACCATTTATCGGGTTTTAATGTG
TGCAATCGCTATCTGGTGGTGCTCTACTACCAATCCAACAAGGCCTTCAA
GCGCGTGGACATGGACAAGAAACAGGAGGAACTGAACAACATTAAGGCCA
AGTACAATCTGAAGACGCCTGAAGCTCCTGCAAGCTTTCTAGACCAT

BO12186.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG13298-RA 366 CG13298-PA 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG13298-RA 920 CG13298-RA 195..560 14..379 1830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6192484..6192709 379..154 1130 100 Minus
3L 28110227 3L 6192776..6192894 153..35 595 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:09:19 has no hits.

BO12186.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:09 Download gff for BO12186.complete
Subject Subject Range Query Range Percent Splice Strand
CG13298-RA 1..366 17..380 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:29 Download gff for BO12186.complete
Subject Subject Range Query Range Percent Splice Strand
CG13298-RA 202..567 14..379 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:24 Download gff for BO12186.complete
Subject Subject Range Query Range Percent Splice Strand
CG13298-RA 198..560 17..381 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:09 Download gff for BO12186.complete
Subject Subject Range Query Range Percent Splice Strand
CG13298-RA 202..567 14..379 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:25 Download gff for BO12186.complete
Subject Subject Range Query Range Percent Splice Strand
CG13298-RA 198..560 17..381 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:25 Download gff for BO12186.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6192482..6192709 154..381 99 <- Minus
3L 6192776..6192894 35..153 100 <- Minus
3L 6192965..6192982 17..34 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:24 Download gff for BO12186.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6185582..6185809 154..381 99 <- Minus
arm_3L 6185876..6185994 35..153 100 <- Minus
arm_3L 6186065..6186082 17..34 100   Minus

BO12186.pep Sequence

Translation from 16 to 397

> BO12186.pep
MNKRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTP
ETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFKRVDMD
KKQEELNNIKAKYNLKTPEAPASFLDH

BO12186.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG13298-PA 121 CG13298-PA 1..121 1..121 642 100 Plus