Clone BO12189 Report

Search the DGRC for BO12189

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:89
Vector:pDNR-Dual
Associated Gene/Transcriptspn-D-RA
Protein status:BO12189.pep: validated full length
Sequenced Size:844

Clone Sequence Records

BO12189.3prime Sequence

842 bp (786 high quality bases) assembled on 2006-04-20

> BO12189.3prime
ATGGTCTAGAAAGCTTGCTTCGGATTCCTTAATTAATCTACTCGTTCGCC
ACGACTTGCCCAGGTGAAGCTCAGAGCTGCCCGAAAACCAGATGCGCTCG
TTGATCAAGTGCGAATGCAGATCCCCCAAGGCGGGCTCCACTTGGAACTT
TTGCTTGACGTAGCGATGCGTGAGCACATTGGTGAAGACCCAGGTCAATT
CGTGTTGACGTTGCAATCTCCGCATGCTTTCATGCAGTTCCAGAAGCATC
TCGTAACGATGGGCGCCATCCTCAAGCATTCGCAGAGTAAAAGCCAGGGA
GTCGATTACAATCAGCTTAATATCGGGATGATCGACGAGATGCCTGTGGC
AACTGAGCACAGTGGCCATTAATTGATCCAGTTTCGGGCACCTCACATAG
TGGATTTTCTGCAGCATTTTGTGAGCCTTAAATTCTGGAACTCTATGTGC
ATACTGCCTTTCCAGTTTCAGAGCTAGGCCCATTAATCTGTCAGGATGGA
AATCCTGCCTGGTGTCTATAAATAATGCACTGCCCTCCAATCCACCAGCT
GCCTTGGGAATTTGTACATTTAGGCAAAGTTGCAAGCACATTTGCGTCTT
TCCGGTGCCCGAATTGCCGATCAGTTCAACCAGGTGACCCAAGGATATTC
CACCTCCAAAGTGAGTGTCCAGGGCTTTCTTGCCCGTCAGGATCTTATTT
GAGGCACTTTGGGAAATGTCCCAGCAGGATTTATCAAATATTCGAAAGTT
TTCATGGGACACAGATGGTCTTCTTTCAATTGCTTCTGGTTGCGATGGCT
CCCAAACCCGAACAAATCTATGATTCATGTCGACTGATAACT

BO12189.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG31069-PA 813 spn-D-RA 1..810 828..19 4050 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
spn-D-RA 1026 CG31069-RA 89..898 828..19 4050 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27165880..27166102 809..587 1115 100 Minus
3R 32079331 3R 27166821..27166994 192..19 870 100 Minus
3R 32079331 3R 27166322..27166480 480..322 795 100 Minus
3R 32079331 3R 27166636..27166764 321..193 645 100 Minus
3R 32079331 3R 27166159..27166267 587..479 545 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:28:16 has no hits.

BO12189.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:51 Download gff for BO12189.3prime
Subject Subject Range Query Range Percent Splice Strand
spn-D-PA 1..813 16..828 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:43 Download gff for BO12189.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31069-PA 1..813 16..828 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:55:19 Download gff for BO12189.3prime
Subject Subject Range Query Range Percent Splice Strand
spn-D-RA 81..905 12..835 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:30:45 Download gff for BO12189.3prime
Subject Subject Range Query Range Percent Splice Strand
spn-D-RA 81..905 12..835 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:30:45 Download gff for BO12189.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27166821..27167001 12..192 98   Minus
3R 27165881..27166102 587..808 100 -> Minus
3R 27166160..27166266 480..586 100 -> Minus
3R 27166323..27166480 322..479 100 -> Minus
3R 27166636..27166764 193..321 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:55:19 Download gff for BO12189.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22991603..22991824 587..808 100 -> Minus
arm_3R 22991882..22991988 480..586 100 -> Minus
arm_3R 22992045..22992202 322..479 100 -> Minus
arm_3R 22992358..22992486 193..321 100 -> Minus
arm_3R 22992543..22992723 12..192 98   Minus

BO12189.5prime Sequence

842 bp (806 high quality bases) assembled on 2006-04-20

> BO12189.5prime
GAAGTTATCAGTCGACATGAATCATAGATTTGTTCGGGTTTGGGAGCCAT
CGCAACCAGAAGCAATTGAAAGAAGACCATCTGTGTCCCATGAAAACTTT
CGAATATTTGATAAATCCTGCTGGGACATTTCCCAAAGTGCCTCAAATAA
GATCCTGACGGGCAAGAAAGCCCTGGACACTCACTTTGGAGGTGGAATAT
CCTTGGGTCACCTGGTTGAACTGATCGGCAATTCGGGCACCGGAAAGACG
CAAATGTGCTTGCAACTTTGCCTAAATGTACAAATTCCCAAGGCAGCTGG
TGGATTGGAGGGCAGTGCATTATTTATAGACACCAGGCAGGATTTCCATC
CTGACAGATTAATGGGCCTAGCTCTGAAACTGGAAAGGCAGTATGCACAT
AGAGTTCCAGAATTTAAGGCTCACAAAATGCTGCAGAAAATCCACTATGT
GAGGTGCCCGAAACTGGATCAATTAATGGCCACTGTGCTCAGTTGCCACA
GGCATCTCGTCGATCATCCCGATATTAAGCTGATTGTAATCGACTCCCTG
GCTTTTACTCTGCGAATGCTTGAGGATGGCGCCCATCGTTACGAGATGCT
TCTGGAACTGCATGAAAGCATGCGGAGATTGCAACGTCAACACGAATTGA
CCTGGGTCTTCACCAATGTGCTCACGCATCGCTACGTCAAGCAAAAGTTC
CAAGTGGAGCCCGCCTTGGGGGATCTGCATTCGCACTTGATCAACGAGCG
CATCTGGTTTTCGGGCAGCTCTGAGCTTCACCTGGGCAAGTCGTGGCGAA
CGAGTAGATTAATTAAGGAATCCGAAGCAAGCTTTCTAGACC

BO12189.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG31069-PA 813 spn-D-RA 1..810 17..826 4050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
spn-D-RA 1026 CG31069-RA 89..898 17..826 4050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27165880..27166102 36..258 1115 100 Plus
3R 32079331 3R 27166821..27166994 653..826 870 100 Plus
3R 32079331 3R 27166322..27166480 365..523 795 100 Plus
3R 32079331 3R 27166636..27166764 524..652 645 100 Plus
3R 32079331 3R 27166159..27166267 258..366 545 100 Plus
Blast to na_te.dros performed on 2015-02-04 03:29:47 has no hits.

BO12189.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:52 Download gff for BO12189.5prime
Subject Subject Range Query Range Percent Splice Strand
spn-D-PA 1..813 17..829 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:45 Download gff for BO12189.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31069-PA 1..813 17..829 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:54:04 Download gff for BO12189.5prime
Subject Subject Range Query Range Percent Splice Strand
spn-D-RA 81..905 10..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:29:34 Download gff for BO12189.5prime
Subject Subject Range Query Range Percent Splice Strand
spn-D-RA 81..905 10..833 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:29:34 Download gff for BO12189.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27166160..27166266 259..365 100 -> Plus
3R 27165881..27166102 37..258 100 -> Plus
3R 27166323..27166480 366..523 100 -> Plus
3R 27166636..27166764 524..652 100 -> Plus
3R 27166821..27167001 653..833 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:54:04 Download gff for BO12189.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22991603..22991824 37..258 100 -> Plus
arm_3R 22991882..22991988 259..365 100 -> Plus
arm_3R 22992045..22992202 366..523 100 -> Plus
arm_3R 22992358..22992486 524..652 100 -> Plus
arm_3R 22992543..22992723 653..833 98   Plus

BO12189.complete Sequence

844 bp assembled on 2006-10-11

GenBank Submission: FJ632349

> BO12189.complete
GAAGTTATCAGTCGACATGAATCATAGATTTGTTCGGGTTTGGGAGCCAT
CGCAACCAGAAGCAATTGAAAGAAGACCATCTGTGTCCCATGAAAACTTT
CGAATATTTGATAAATCCTGCTGGGACATTTCCCAAAGTGCCTCAAATAA
GATCCTGACGGGCAAGAAAGCCCTGGACACTCACTTTGGAGGTGGAATAT
CCTTGGGTCACCTGGTTGAACTGATCGGCAATTCGGGCACCGGAAAGACG
CAAATGTGCTTGCAACTTTGCCTAAATGTACAAATTCCCAAGGCAGCTGG
TGGATTGGAGGGCAGTGCATTATTTATAGACACCAGGCAGGATTTCCATC
CTGACAGATTAATGGGCCTAGCTCTGAAACTGGAAAGGCAGTATGCACAT
AGAGTTCCAGAATTTAAGGCTCACAAAATGCTGCAGAAAATCCACTATGT
GAGGTGCCCGAAACTGGATCAATTAATGGCCACTGTGCTCAGTTGCCACA
GGCATCTCGTCGATCATCCCGATATTAAGCTGATTGTAATCGACTCCCTG
GCTTTTACTCTGCGAATGCTTGAGGATGGCGCCCATCGTTACGAGATGCT
TCTGGAACTGCATGAAAGCATGCGGAGATTGCAACGTCAACACGAATTGA
CCTGGGTCTTCACCAATGTGCTCACGCATCGCTACGTCAAGCAAAAGTTC
CAAGTGGAGCCCGCCTTGGGGGATCTGCATTCGCACTTGATCAACGAGCG
CATCTGGTTTTCGGGCAGCTCTGAGCTTCACCTGGGCAAGTCGTGGCGAA
CGAGTAGATTAATTAAGGAATCCGAAGCAAGCTTTCTAGACCAT

BO12189.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:10:55
Subject Length Description Subject Range Query Range Score Percent Strand
spn-D-RA 813 CG31069-PA 1..810 17..826 4050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
spn-D-RA 1026 CG31069-RA 89..898 17..826 4050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27165880..27166102 36..258 1115 100 Plus
3R 32079331 3R 27166821..27166994 653..826 870 100 Plus
3R 32079331 3R 27166322..27166480 365..523 795 100 Plus
3R 32079331 3R 27166636..27166764 524..652 645 100 Plus
3R 32079331 3R 27166159..27166267 258..366 545 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:10:54 has no hits.

BO12189.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:10 Download gff for BO12189.complete
Subject Subject Range Query Range Percent Splice Strand
spn-D-RA 1..813 17..829 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:46 Download gff for BO12189.complete
Subject Subject Range Query Range Percent Splice Strand
spn-D-RA 79..903 10..833 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:06 Download gff for BO12189.complete
Subject Subject Range Query Range Percent Splice Strand
spn-D-RA 89..898 17..828 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:10 Download gff for BO12189.complete
Subject Subject Range Query Range Percent Splice Strand
spn-D-RA 79..903 10..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:39 Download gff for BO12189.complete
Subject Subject Range Query Range Percent Splice Strand
spn-D-RA 89..898 17..828 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:39 Download gff for BO12189.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27165804..27165823 17..36 100 -> Plus
3R 27165881..27166102 37..258 100 -> Plus
3R 27166160..27166266 259..365 100 -> Plus
3R 27166323..27166480 366..523 100 -> Plus
3R 27166636..27166764 524..652 100 -> Plus
3R 27166821..27166994 653..828 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:06 Download gff for BO12189.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22991526..22991545 17..36 100 -> Plus
arm_3R 22991603..22991824 37..258 100 -> Plus
arm_3R 22991882..22991988 259..365 100 -> Plus
arm_3R 22992045..22992202 366..523 100 -> Plus
arm_3R 22992358..22992486 524..652 100 -> Plus
arm_3R 22992543..22992716 653..828 98   Plus

BO12189.pep Sequence

Translation from 16 to 844

> BO12189.pep
MNHRFVRVWEPSQPEAIERRPSVSHENFRIFDKSCWDISQSASNKILTGK
KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGS
ALFIDTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKMLQKIHYVRCPKL
DQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLRMLEDGAHRYEMLLELHE
SMRRLQRQHELTWVFTNVLTHRYVKQKFQVEPALGDLHSHLINERIWFSG
SSELHLGKSWRTSRLIKESEASFLDH

BO12189.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:56
Subject Length Description Subject Range Query Range Score Percent Strand
spn-D-PA 270 CG31069-PA 1..270 1..270 1429 100 Plus
spn-B-PA 341 CG3325-PA 86..289 44..255 188 28.8 Plus
spn-A-PB 279 CG7948-PB 41..266 45..273 175 29.2 Plus
spn-A-PA 336 CG7948-PA 98..323 45..273 175 29.2 Plus