Clone Sequence Records
BO12189.3prime Sequence
842 bp (786 high quality bases) assembled on 2006-04-20
> BO12189.3prime
ATGGTCTAGAAAGCTTGCTTCGGATTCCTTAATTAATCTACTCGTTCGCC
ACGACTTGCCCAGGTGAAGCTCAGAGCTGCCCGAAAACCAGATGCGCTCG
TTGATCAAGTGCGAATGCAGATCCCCCAAGGCGGGCTCCACTTGGAACTT
TTGCTTGACGTAGCGATGCGTGAGCACATTGGTGAAGACCCAGGTCAATT
CGTGTTGACGTTGCAATCTCCGCATGCTTTCATGCAGTTCCAGAAGCATC
TCGTAACGATGGGCGCCATCCTCAAGCATTCGCAGAGTAAAAGCCAGGGA
GTCGATTACAATCAGCTTAATATCGGGATGATCGACGAGATGCCTGTGGC
AACTGAGCACAGTGGCCATTAATTGATCCAGTTTCGGGCACCTCACATAG
TGGATTTTCTGCAGCATTTTGTGAGCCTTAAATTCTGGAACTCTATGTGC
ATACTGCCTTTCCAGTTTCAGAGCTAGGCCCATTAATCTGTCAGGATGGA
AATCCTGCCTGGTGTCTATAAATAATGCACTGCCCTCCAATCCACCAGCT
GCCTTGGGAATTTGTACATTTAGGCAAAGTTGCAAGCACATTTGCGTCTT
TCCGGTGCCCGAATTGCCGATCAGTTCAACCAGGTGACCCAAGGATATTC
CACCTCCAAAGTGAGTGTCCAGGGCTTTCTTGCCCGTCAGGATCTTATTT
GAGGCACTTTGGGAAATGTCCCAGCAGGATTTATCAAATATTCGAAAGTT
TTCATGGGACACAGATGGTCTTCTTTCAATTGCTTCTGGTTGCGATGGCT
CCCAAACCCGAACAAATCTATGATTCATGTCGACTGATAACT
BO12189.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31069-PA | 813 | spn-D-RA | 1..810 | 828..19 | 4050 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:28:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spn-D-RA | 1026 | CG31069-RA | 89..898 | 828..19 | 4050 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:28:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27165880..27166102 | 809..587 | 1115 | 100 | Minus |
3R | 32079331 | 3R | 27166821..27166994 | 192..19 | 870 | 100 | Minus |
3R | 32079331 | 3R | 27166322..27166480 | 480..322 | 795 | 100 | Minus |
3R | 32079331 | 3R | 27166636..27166764 | 321..193 | 645 | 100 | Minus |
3R | 32079331 | 3R | 27166159..27166267 | 587..479 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:28:16 has no hits.
BO12189.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:51 Download gff for
BO12189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-D-PA | 1..813 | 16..828 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:43 Download gff for
BO12189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31069-PA | 1..813 | 16..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:55:19 Download gff for
BO12189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-D-RA | 81..905 | 12..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:30:45 Download gff for
BO12189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-D-RA | 81..905 | 12..835 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:30:45 Download gff for
BO12189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27166821..27167001 | 12..192 | 98 | | Minus |
3R | 27165881..27166102 | 587..808 | 100 | -> | Minus |
3R | 27166160..27166266 | 480..586 | 100 | -> | Minus |
3R | 27166323..27166480 | 322..479 | 100 | -> | Minus |
3R | 27166636..27166764 | 193..321 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:55:19 Download gff for
BO12189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22991603..22991824 | 587..808 | 100 | -> | Minus |
arm_3R | 22991882..22991988 | 480..586 | 100 | -> | Minus |
arm_3R | 22992045..22992202 | 322..479 | 100 | -> | Minus |
arm_3R | 22992358..22992486 | 193..321 | 100 | -> | Minus |
arm_3R | 22992543..22992723 | 12..192 | 98 | | Minus |
BO12189.5prime Sequence
842 bp (806 high quality bases) assembled on 2006-04-20
> BO12189.5prime
GAAGTTATCAGTCGACATGAATCATAGATTTGTTCGGGTTTGGGAGCCAT
CGCAACCAGAAGCAATTGAAAGAAGACCATCTGTGTCCCATGAAAACTTT
CGAATATTTGATAAATCCTGCTGGGACATTTCCCAAAGTGCCTCAAATAA
GATCCTGACGGGCAAGAAAGCCCTGGACACTCACTTTGGAGGTGGAATAT
CCTTGGGTCACCTGGTTGAACTGATCGGCAATTCGGGCACCGGAAAGACG
CAAATGTGCTTGCAACTTTGCCTAAATGTACAAATTCCCAAGGCAGCTGG
TGGATTGGAGGGCAGTGCATTATTTATAGACACCAGGCAGGATTTCCATC
CTGACAGATTAATGGGCCTAGCTCTGAAACTGGAAAGGCAGTATGCACAT
AGAGTTCCAGAATTTAAGGCTCACAAAATGCTGCAGAAAATCCACTATGT
GAGGTGCCCGAAACTGGATCAATTAATGGCCACTGTGCTCAGTTGCCACA
GGCATCTCGTCGATCATCCCGATATTAAGCTGATTGTAATCGACTCCCTG
GCTTTTACTCTGCGAATGCTTGAGGATGGCGCCCATCGTTACGAGATGCT
TCTGGAACTGCATGAAAGCATGCGGAGATTGCAACGTCAACACGAATTGA
CCTGGGTCTTCACCAATGTGCTCACGCATCGCTACGTCAAGCAAAAGTTC
CAAGTGGAGCCCGCCTTGGGGGATCTGCATTCGCACTTGATCAACGAGCG
CATCTGGTTTTCGGGCAGCTCTGAGCTTCACCTGGGCAAGTCGTGGCGAA
CGAGTAGATTAATTAAGGAATCCGAAGCAAGCTTTCTAGACC
BO12189.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31069-PA | 813 | spn-D-RA | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:29:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spn-D-RA | 1026 | CG31069-RA | 89..898 | 17..826 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:29:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27165880..27166102 | 36..258 | 1115 | 100 | Plus |
3R | 32079331 | 3R | 27166821..27166994 | 653..826 | 870 | 100 | Plus |
3R | 32079331 | 3R | 27166322..27166480 | 365..523 | 795 | 100 | Plus |
3R | 32079331 | 3R | 27166636..27166764 | 524..652 | 645 | 100 | Plus |
3R | 32079331 | 3R | 27166159..27166267 | 258..366 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:29:47 has no hits.
BO12189.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:52 Download gff for
BO12189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-D-PA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:45 Download gff for
BO12189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31069-PA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:54:04 Download gff for
BO12189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-D-RA | 81..905 | 10..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:29:34 Download gff for
BO12189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-D-RA | 81..905 | 10..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:29:34 Download gff for
BO12189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27166160..27166266 | 259..365 | 100 | -> | Plus |
3R | 27165881..27166102 | 37..258 | 100 | -> | Plus |
3R | 27166323..27166480 | 366..523 | 100 | -> | Plus |
3R | 27166636..27166764 | 524..652 | 100 | -> | Plus |
3R | 27166821..27167001 | 653..833 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:54:04 Download gff for
BO12189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22991603..22991824 | 37..258 | 100 | -> | Plus |
arm_3R | 22991882..22991988 | 259..365 | 100 | -> | Plus |
arm_3R | 22992045..22992202 | 366..523 | 100 | -> | Plus |
arm_3R | 22992358..22992486 | 524..652 | 100 | -> | Plus |
arm_3R | 22992543..22992723 | 653..833 | 98 | | Plus |
BO12189.complete Sequence
844 bp assembled on 2006-10-11
GenBank Submission: FJ632349
> BO12189.complete
GAAGTTATCAGTCGACATGAATCATAGATTTGTTCGGGTTTGGGAGCCAT
CGCAACCAGAAGCAATTGAAAGAAGACCATCTGTGTCCCATGAAAACTTT
CGAATATTTGATAAATCCTGCTGGGACATTTCCCAAAGTGCCTCAAATAA
GATCCTGACGGGCAAGAAAGCCCTGGACACTCACTTTGGAGGTGGAATAT
CCTTGGGTCACCTGGTTGAACTGATCGGCAATTCGGGCACCGGAAAGACG
CAAATGTGCTTGCAACTTTGCCTAAATGTACAAATTCCCAAGGCAGCTGG
TGGATTGGAGGGCAGTGCATTATTTATAGACACCAGGCAGGATTTCCATC
CTGACAGATTAATGGGCCTAGCTCTGAAACTGGAAAGGCAGTATGCACAT
AGAGTTCCAGAATTTAAGGCTCACAAAATGCTGCAGAAAATCCACTATGT
GAGGTGCCCGAAACTGGATCAATTAATGGCCACTGTGCTCAGTTGCCACA
GGCATCTCGTCGATCATCCCGATATTAAGCTGATTGTAATCGACTCCCTG
GCTTTTACTCTGCGAATGCTTGAGGATGGCGCCCATCGTTACGAGATGCT
TCTGGAACTGCATGAAAGCATGCGGAGATTGCAACGTCAACACGAATTGA
CCTGGGTCTTCACCAATGTGCTCACGCATCGCTACGTCAAGCAAAAGTTC
CAAGTGGAGCCCGCCTTGGGGGATCTGCATTCGCACTTGATCAACGAGCG
CATCTGGTTTTCGGGCAGCTCTGAGCTTCACCTGGGCAAGTCGTGGCGAA
CGAGTAGATTAATTAAGGAATCCGAAGCAAGCTTTCTAGACCAT
BO12189.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:10:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spn-D-RA | 813 | CG31069-PA | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spn-D-RA | 1026 | CG31069-RA | 89..898 | 17..826 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27165880..27166102 | 36..258 | 1115 | 100 | Plus |
3R | 32079331 | 3R | 27166821..27166994 | 653..826 | 870 | 100 | Plus |
3R | 32079331 | 3R | 27166322..27166480 | 365..523 | 795 | 100 | Plus |
3R | 32079331 | 3R | 27166636..27166764 | 524..652 | 645 | 100 | Plus |
3R | 32079331 | 3R | 27166159..27166267 | 258..366 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:10:54 has no hits.
BO12189.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:10 Download gff for
BO12189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-D-RA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:46 Download gff for
BO12189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-D-RA | 79..903 | 10..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:06 Download gff for
BO12189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-D-RA | 89..898 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:10 Download gff for
BO12189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-D-RA | 79..903 | 10..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:39 Download gff for
BO12189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-D-RA | 89..898 | 17..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:39 Download gff for
BO12189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27165804..27165823 | 17..36 | 100 | -> | Plus |
3R | 27165881..27166102 | 37..258 | 100 | -> | Plus |
3R | 27166160..27166266 | 259..365 | 100 | -> | Plus |
3R | 27166323..27166480 | 366..523 | 100 | -> | Plus |
3R | 27166636..27166764 | 524..652 | 100 | -> | Plus |
3R | 27166821..27166994 | 653..828 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:06 Download gff for
BO12189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22991526..22991545 | 17..36 | 100 | -> | Plus |
arm_3R | 22991603..22991824 | 37..258 | 100 | -> | Plus |
arm_3R | 22991882..22991988 | 259..365 | 100 | -> | Plus |
arm_3R | 22992045..22992202 | 366..523 | 100 | -> | Plus |
arm_3R | 22992358..22992486 | 524..652 | 100 | -> | Plus |
arm_3R | 22992543..22992716 | 653..828 | 98 | | Plus |
BO12189.pep Sequence
Translation from 16 to 844
> BO12189.pep
MNHRFVRVWEPSQPEAIERRPSVSHENFRIFDKSCWDISQSASNKILTGK
KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGS
ALFIDTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKMLQKIHYVRCPKL
DQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLRMLEDGAHRYEMLLELHE
SMRRLQRQHELTWVFTNVLTHRYVKQKFQVEPALGDLHSHLINERIWFSG
SSELHLGKSWRTSRLIKESEASFLDH
BO12189.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spn-D-PA | 270 | CG31069-PA | 1..270 | 1..270 | 1429 | 100 | Plus |
spn-B-PA | 341 | CG3325-PA | 86..289 | 44..255 | 188 | 28.8 | Plus |
spn-A-PB | 279 | CG7948-PB | 41..266 | 45..273 | 175 | 29.2 | Plus |
spn-A-PA | 336 | CG7948-PA | 98..323 | 45..273 | 175 | 29.2 | Plus |