Clone BO12190 Report

Search the DGRC for BO12190

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG31675-RA
Protein status:BO12190.pep: validated full length
Sequenced Size:478

Clone Sequence Records

BO12190.3prime Sequence

476 bp (475 high quality bases) assembled on 2006-04-20

> BO12190.3prime
ATGGTCTAGAAAGCTTGCGAGTAGTTGAGTTGCCAAGAGAAACAAGACCA
GACTGCCGAAGATTTTCCATTTATCCACTGGATGATTTTCCGATCCGTTG
CAGTAGTTCTCGCTGTCGCACACATGACAACTTGAGTTCTGCACCGCCGA
CAGGGTGGGGTCCATTTTGCACCACACATCGGTGGCATTTACCTCGCCGA
AGTAGCAGCCTCTGACGATCTTACGCACGCCGTTTTCCTTGAATACCCGT
TTCAAACAGGCCGTGGCATTCACGCTGAGCAGATCGTTCTCCAGGAATCG
CGGAGGAGCAATGAAGGCGCAGTCGTATTTAAAATGGTTCTCGACTTCGA
AGTCGTCGCCGCAACTAGCCTCGTAGACGGATTCGCAGGCATAGCACTTG
ATGGCGTAAGCTGAGGCCAGTAGCGAGATGAGCGCGCCAAACAAAAGTAA
ATAATGCTGCATGTCGACTGATAACT

BO12190.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG31675-PA 447 CG31675-RA 1..444 462..19 2220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG31675-RA 1151 CG31675-RA 392..835 462..19 2220 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20869116..20869334 237..19 1095 100 Minus
2L 23513712 2L 20868349..20868524 412..237 880 100 Minus
2L 23513712 2L 20868146..20868197 462..411 260 100 Minus
Blast to na_te.dros performed on 2015-01-31 12:33:24 has no hits.

BO12190.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:53 Download gff for BO12190.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31675-PA 1..447 16..462 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:46 Download gff for BO12190.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31675-PA 1..447 16..462 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 00:01:24 Download gff for BO12190.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31675-RA 384..841 13..470 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:05:56 Download gff for BO12190.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31675-RA 384..841 13..470 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:05:56 Download gff for BO12190.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20868138..20868197 411..470 95 -> Minus
2L 20868351..20868524 237..410 100 -> Minus
2L 20869117..20869340 13..236 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 00:01:24 Download gff for BO12190.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20868138..20868197 411..470 95 -> Minus
arm_2L 20868351..20868524 237..410 100 -> Minus
arm_2L 20869117..20869340 13..236 98   Minus

BO12190.5prime Sequence

476 bp (475 high quality bases) assembled on 2006-04-20

> BO12190.5prime
GAAGTTATCAGTCGACATGCAGCATTATTTACTTTTGTTTGGCGCGCTCA
TCTCGCTACTGGCCTCAGCTTACGCCATCAAGTGCTATGCCTGCGAATCC
GTCTACGAGGCTAGTTGCGGCGACGACTTCGAAGTCGAGAACCATTTTAA
ATACGACTGCGCCTTCATTGCTCCTCCGCGATTCCTGGAGAACGATCTGC
TCAGCGTGAATGCCACGGCCTGTTTGAAACGGGTATTCAAGGAAAACGGC
GTGCGTAAGATCGTCAGAGGCTGCTACTTCGGCGAGGTAAATGCCACCGA
TGTGTGGTGCAAAATGGACCCCACCCTGTCGGCGGTGCAGAACTCAAGTT
GTCATGTGTGCGACAGCGAGAACTACTGCAACGGATCGGAAAATCATCCA
GTGGATAAATGGAAAATCTTCGGCAGTCTGGTCTTGTTTCTCTTGGCAAC
TCAACTACTCGCAAGCTTTCTAGACC

BO12190.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG31675-PA 447 CG31675-RA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG31675-RA 1151 CG31675-RA 392..835 17..460 2220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20869116..20869334 242..460 1095 100 Plus
2L 23513712 2L 20868349..20868524 67..242 880 100 Plus
2L 23513712 2L 20868146..20868197 17..68 260 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:32:54 has no hits.

BO12190.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:54 Download gff for BO12190.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31675-PA 1..447 17..463 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:47 Download gff for BO12190.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31675-PA 1..447 17..463 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:50:15 Download gff for BO12190.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31675-RA 384..841 9..466 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:27 Download gff for BO12190.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31675-RA 384..841 9..466 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:27 Download gff for BO12190.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20868138..20868197 9..68 95 -> Plus
2L 20868351..20868524 69..242 100 -> Plus
2L 20869117..20869340 243..466 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:50:15 Download gff for BO12190.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20868138..20868197 9..68 95 -> Plus
arm_2L 20868351..20868524 69..242 100 -> Plus
arm_2L 20869117..20869340 243..466 98   Plus

BO12190.complete Sequence

478 bp assembled on 2006-10-11

GenBank Submission: FJ632350

> BO12190.complete
GAAGTTATCAGTCGACATGCAGCATTATTTACTTTTGTTTGGCGCGCTCA
TCTCGCTACTGGCCTCAGCTTACGCCATCAAGTGCTATGCCTGCGAATCC
GTCTACGAGGCTAGTTGCGGCGACGACTTCGAAGTCGAGAACCATTTTAA
ATACGACTGCGCCTTCATTGCTCCTCCGCGATTCCTGGAGAACGATCTGC
TCAGCGTGAATGCCACGGCCTGTTTGAAACGGGTATTCAAGGAAAACGGC
GTGCGTAAGATCGTCAGAGGCTGCTACTTCGGCGAGGTAAATGCCACCGA
TGTGTGGTGCAAAATGGACCCCACCCTGTCGGCGGTGCAGAACTCAAGTT
GTCATGTGTGCGACAGCGAGAACTACTGCAACGGATCGGAAAATCATCCA
GTGGATAAATGGAAAATCTTCGGCAGTCTGGTCTTGTTTCTCTTGGCAAC
TCAACTACTCGCAAGCTTTCTAGACCAT

BO12190.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31675-RA 447 CG31675-PA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:57:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG31675-RA 1151 CG31675-RA 392..835 17..460 2220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20869116..20869334 242..460 1095 100 Plus
2L 23513712 2L 20868349..20868524 67..242 880 100 Plus
2L 23513712 2L 20868146..20868197 17..68 260 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:57:22 has no hits.

BO12190.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:11 Download gff for BO12190.complete
Subject Subject Range Query Range Percent Splice Strand
CG31675-RA 1..447 17..463 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:47 Download gff for BO12190.complete
Subject Subject Range Query Range Percent Splice Strand
CG31675-RA 382..839 9..466 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:26 Download gff for BO12190.complete
Subject Subject Range Query Range Percent Splice Strand
CG31675-RA 392..835 17..462 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:11 Download gff for BO12190.complete
Subject Subject Range Query Range Percent Splice Strand
CG31675-RA 382..839 9..466 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:45 Download gff for BO12190.complete
Subject Subject Range Query Range Percent Splice Strand
CG31675-RA 392..835 17..462 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:45 Download gff for BO12190.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20868146..20868197 17..68 100 -> Plus
2L 20868351..20868524 69..242 100 -> Plus
2L 20869117..20869334 243..462 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:26 Download gff for BO12190.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20868146..20868197 17..68 100 -> Plus
arm_2L 20868351..20868524 69..242 100 -> Plus
arm_2L 20869117..20869334 243..462 99   Plus

BO12190.pep Sequence

Translation from 16 to 478

> BO12190.pep
MQHYLLLFGALISLLASAYAIKCYACESVYEASCGDDFEVENHFKYDCAF
IAPPRFLENDLLSVNATACLKRVFKENGVRKIVRGCYFGEVNATDVWCKM
DPTLSAVQNSSCHVCDSENYCNGSENHPVDKWKIFGSLVLFLLATQLLAS
FLDH

BO12190.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG31675-PA 148 CG31675-PA 1..148 1..148 801 100 Plus
CG9336-PA 148 CG9336-PA 9..148 6..149 271 40.7 Plus
CG9338-PB 147 CG9338-PB 8..147 5..149 262 38.6 Plus
CG9338-PA 147 CG9338-PA 8..147 5..149 262 38.6 Plus
CG9336-PB 115 CG9336-PB 4..115 34..149 199 37.6 Plus