Clone Sequence Records
BO12190.3prime Sequence
476 bp (475 high quality bases) assembled on 2006-04-20
> BO12190.3prime
ATGGTCTAGAAAGCTTGCGAGTAGTTGAGTTGCCAAGAGAAACAAGACCA
GACTGCCGAAGATTTTCCATTTATCCACTGGATGATTTTCCGATCCGTTG
CAGTAGTTCTCGCTGTCGCACACATGACAACTTGAGTTCTGCACCGCCGA
CAGGGTGGGGTCCATTTTGCACCACACATCGGTGGCATTTACCTCGCCGA
AGTAGCAGCCTCTGACGATCTTACGCACGCCGTTTTCCTTGAATACCCGT
TTCAAACAGGCCGTGGCATTCACGCTGAGCAGATCGTTCTCCAGGAATCG
CGGAGGAGCAATGAAGGCGCAGTCGTATTTAAAATGGTTCTCGACTTCGA
AGTCGTCGCCGCAACTAGCCTCGTAGACGGATTCGCAGGCATAGCACTTG
ATGGCGTAAGCTGAGGCCAGTAGCGAGATGAGCGCGCCAAACAAAAGTAA
ATAATGCTGCATGTCGACTGATAACT
BO12190.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31675-PA | 447 | CG31675-RA | 1..444 | 462..19 | 2220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:33:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31675-RA | 1151 | CG31675-RA | 392..835 | 462..19 | 2220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:33:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20869116..20869334 | 237..19 | 1095 | 100 | Minus |
2L | 23513712 | 2L | 20868349..20868524 | 412..237 | 880 | 100 | Minus |
2L | 23513712 | 2L | 20868146..20868197 | 462..411 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 12:33:24 has no hits.
BO12190.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:53 Download gff for
BO12190.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31675-PA | 1..447 | 16..462 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:46 Download gff for
BO12190.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31675-PA | 1..447 | 16..462 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 00:01:24 Download gff for
BO12190.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31675-RA | 384..841 | 13..470 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:05:56 Download gff for
BO12190.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31675-RA | 384..841 | 13..470 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:05:56 Download gff for
BO12190.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20868138..20868197 | 411..470 | 95 | -> | Minus |
2L | 20868351..20868524 | 237..410 | 100 | -> | Minus |
2L | 20869117..20869340 | 13..236 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 00:01:24 Download gff for
BO12190.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20868138..20868197 | 411..470 | 95 | -> | Minus |
arm_2L | 20868351..20868524 | 237..410 | 100 | -> | Minus |
arm_2L | 20869117..20869340 | 13..236 | 98 | | Minus |
BO12190.5prime Sequence
476 bp (475 high quality bases) assembled on 2006-04-20
> BO12190.5prime
GAAGTTATCAGTCGACATGCAGCATTATTTACTTTTGTTTGGCGCGCTCA
TCTCGCTACTGGCCTCAGCTTACGCCATCAAGTGCTATGCCTGCGAATCC
GTCTACGAGGCTAGTTGCGGCGACGACTTCGAAGTCGAGAACCATTTTAA
ATACGACTGCGCCTTCATTGCTCCTCCGCGATTCCTGGAGAACGATCTGC
TCAGCGTGAATGCCACGGCCTGTTTGAAACGGGTATTCAAGGAAAACGGC
GTGCGTAAGATCGTCAGAGGCTGCTACTTCGGCGAGGTAAATGCCACCGA
TGTGTGGTGCAAAATGGACCCCACCCTGTCGGCGGTGCAGAACTCAAGTT
GTCATGTGTGCGACAGCGAGAACTACTGCAACGGATCGGAAAATCATCCA
GTGGATAAATGGAAAATCTTCGGCAGTCTGGTCTTGTTTCTCTTGGCAAC
TCAACTACTCGCAAGCTTTCTAGACC
BO12190.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31675-PA | 447 | CG31675-RA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:32:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31675-RA | 1151 | CG31675-RA | 392..835 | 17..460 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:32:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20869116..20869334 | 242..460 | 1095 | 100 | Plus |
2L | 23513712 | 2L | 20868349..20868524 | 67..242 | 880 | 100 | Plus |
2L | 23513712 | 2L | 20868146..20868197 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:32:54 has no hits.
BO12190.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:54 Download gff for
BO12190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31675-PA | 1..447 | 17..463 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:47 Download gff for
BO12190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31675-PA | 1..447 | 17..463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:50:15 Download gff for
BO12190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31675-RA | 384..841 | 9..466 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:27 Download gff for
BO12190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31675-RA | 384..841 | 9..466 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:27 Download gff for
BO12190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20868138..20868197 | 9..68 | 95 | -> | Plus |
2L | 20868351..20868524 | 69..242 | 100 | -> | Plus |
2L | 20869117..20869340 | 243..466 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:50:15 Download gff for
BO12190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20868138..20868197 | 9..68 | 95 | -> | Plus |
arm_2L | 20868351..20868524 | 69..242 | 100 | -> | Plus |
arm_2L | 20869117..20869340 | 243..466 | 98 | | Plus |
BO12190.complete Sequence
478 bp assembled on 2006-10-11
GenBank Submission: FJ632350
> BO12190.complete
GAAGTTATCAGTCGACATGCAGCATTATTTACTTTTGTTTGGCGCGCTCA
TCTCGCTACTGGCCTCAGCTTACGCCATCAAGTGCTATGCCTGCGAATCC
GTCTACGAGGCTAGTTGCGGCGACGACTTCGAAGTCGAGAACCATTTTAA
ATACGACTGCGCCTTCATTGCTCCTCCGCGATTCCTGGAGAACGATCTGC
TCAGCGTGAATGCCACGGCCTGTTTGAAACGGGTATTCAAGGAAAACGGC
GTGCGTAAGATCGTCAGAGGCTGCTACTTCGGCGAGGTAAATGCCACCGA
TGTGTGGTGCAAAATGGACCCCACCCTGTCGGCGGTGCAGAACTCAAGTT
GTCATGTGTGCGACAGCGAGAACTACTGCAACGGATCGGAAAATCATCCA
GTGGATAAATGGAAAATCTTCGGCAGTCTGGTCTTGTTTCTCTTGGCAAC
TCAACTACTCGCAAGCTTTCTAGACCAT
BO12190.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:57:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31675-RA | 447 | CG31675-PA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:57:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31675-RA | 1151 | CG31675-RA | 392..835 | 17..460 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:57:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20869116..20869334 | 242..460 | 1095 | 100 | Plus |
2L | 23513712 | 2L | 20868349..20868524 | 67..242 | 880 | 100 | Plus |
2L | 23513712 | 2L | 20868146..20868197 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:57:22 has no hits.
BO12190.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:11 Download gff for
BO12190.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31675-RA | 1..447 | 17..463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:47 Download gff for
BO12190.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31675-RA | 382..839 | 9..466 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:26 Download gff for
BO12190.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31675-RA | 392..835 | 17..462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:11 Download gff for
BO12190.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31675-RA | 382..839 | 9..466 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:45 Download gff for
BO12190.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31675-RA | 392..835 | 17..462 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:45 Download gff for
BO12190.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20868146..20868197 | 17..68 | 100 | -> | Plus |
2L | 20868351..20868524 | 69..242 | 100 | -> | Plus |
2L | 20869117..20869334 | 243..462 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:26 Download gff for
BO12190.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20868146..20868197 | 17..68 | 100 | -> | Plus |
arm_2L | 20868351..20868524 | 69..242 | 100 | -> | Plus |
arm_2L | 20869117..20869334 | 243..462 | 99 | | Plus |
BO12190.pep Sequence
Translation from 16 to 478
> BO12190.pep
MQHYLLLFGALISLLASAYAIKCYACESVYEASCGDDFEVENHFKYDCAF
IAPPRFLENDLLSVNATACLKRVFKENGVRKIVRGCYFGEVNATDVWCKM
DPTLSAVQNSSCHVCDSENYCNGSENHPVDKWKIFGSLVLFLLATQLLAS
FLDH
BO12190.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31675-PA | 148 | CG31675-PA | 1..148 | 1..148 | 801 | 100 | Plus |
CG9336-PA | 148 | CG9336-PA | 9..148 | 6..149 | 271 | 40.7 | Plus |
CG9338-PB | 147 | CG9338-PB | 8..147 | 5..149 | 262 | 38.6 | Plus |
CG9338-PA | 147 | CG9338-PA | 8..147 | 5..149 | 262 | 38.6 | Plus |
CG9336-PB | 115 | CG9336-PB | 4..115 | 34..149 | 199 | 37.6 | Plus |