Clone Sequence Records
BO12191.3prime Sequence
857 bp (785 high quality bases) assembled on 2006-04-20
> BO12191.3prime
ATGGTCTAGAAAGCTTGCATATACGCGATACTTGTAGAAATTGACAAAGG
ATATCGTTGCGTTCCAACCAATAATTGTGACGACCAGAAACAGTAGAAAG
ATGATGGGCAGGGCGATGAGAATGATGCGGGTGTTTTTCAGATGGGGAAT
GCAATTGTATCCCAGAAATGTGATGTACACATAATAGCCCATGCCCATCA
ACCAAAAGGTGTTGCCCAGAAATCGCGAGATGAACCACGTTTGGCTGATC
AGCCAGTTGTAGAAGAACAGCTGGATGAAGTGCAGCAGCATCAGTGGCGG
AAAGAAGGCATTTAGATGGACATCGAAGGCATAGCCCCACTCGATATCCG
GCTCCAGGCTATTTGTGCGCAGATACCGATTCGTCACCGCCCAGAAGAAC
GAGGCTATTATGATGCCCACGAAAATACAGTCCACGAATACCACATAGAA
TATGAACGAGATGCTCTGCCAGAAAGACAGTCCCAGCACATACGCAAAGC
CCAGGGAGGTGACACATAGGCAGACGACCAGGAGGACCAGAAAGGCCGGA
TCGTCGCGGGCGAACTGTGACTTGGTCTGTTTCCGGTAGTTGAAGTTCCG
GTACACCTTTTGGGGCGCCACAAAGAGGTAGAGCATCTGCCACAGGGCAA
ACTCGAAGTCCATTTGATTGAACTTGAGCAGACGTCGCAGGTATTTGTAG
CTCTTGGTGGTCGCCGAGAGGCAGTCCCTCCGGTGGTTGGCGGGTGGCGG
TAATGGCGAATGGAGACGCGAGGCACTCGAGTAGCCGGAAACCACCGACG
GCGTCGGCGATTGTGTATACTTAACGTGGCTATATTGAGTCATGTCGACT
GATAACT
BO12191.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9773-PA | 828 | CG9773-RA | 1..825 | 843..19 | 4125 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:40:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9773-RA | 1021 | CG9773-RA | 96..920 | 843..19 | 4125 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:40:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8675572..8675933 | 152..513 | 1810 | 100 | Plus |
| 3R | 32079331 | 3R | 8676188..8676518 | 513..843 | 1655 | 100 | Plus |
| 3R | 32079331 | 3R | 8675384..8675517 | 19..152 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:40:16 has no hits.
BO12191.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:55 Download gff for
BO12191.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9773-PA | 1..828 | 18..843 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:48 Download gff for
BO12191.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9773-PA | 1..828 | 18..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:07:29 Download gff for
BO12191.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9773-RA | 96..920 | 19..843 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:22:56 Download gff for
BO12191.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9773-RA | 96..920 | 19..843 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:22:56 Download gff for
BO12191.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8675384..8675517 | 19..152 | 100 | <- | Plus |
| 3R | 8675573..8675932 | 153..512 | 100 | <- | Plus |
| 3R | 8676188..8676518 | 513..843 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:07:29 Download gff for
BO12191.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4501106..4501239 | 19..152 | 100 | <- | Plus |
| arm_3R | 4501295..4501654 | 153..512 | 100 | <- | Plus |
| arm_3R | 4501910..4502240 | 513..843 | 100 | | Plus |
BO12191.5prime Sequence
857 bp (856 high quality bases) assembled on 2006-04-20
> BO12191.5prime
GAAGTTATCAGTCGACATGACTCAATATAGCCACGTTAAGTATACACAAT
CGCCGACGCCGTCGGTGGTTTCCGGCTACTCGAGTGCCTCGCGTCTCCAT
TCGCCATTACCGCCACCCGCCAACCACCGGAGGGACTGCCTCTCGGCGAC
CACCAAGAGCTACAAATACCTGCGACGTCTGCTCAAGTTCAATCAAATGG
ACTTCGAGTTTGCCCTGTGGCAGATGCTCTACCTCTTTGTGGCGCCCCAA
AAGGTGTACCGGAACTTCAACTACCGGAAACAGACCAAGTCACAGTTCGC
CCGCGACGATCCGGCCTTTCTGGTCCTCCTGGTCGTCTGCCTATGTGTCA
CCTCCCTGGGCTTTGCGTATGTGCTGGGACTGTCTTTCTGGCAGAGCATC
TCGTTCATATTCTATGTGGTATTCGTGGACTGTATTTTCGTGGGCATCAT
AATAGCCTCGTTCTTCTGGGCGGTGACGAATCGGTATCTGCGCACAAATA
GCCTGGAGCCGGATATCGAGTGGGGCTATGCCTTCGATGTCCATCTAAAT
GCCTTCTTTCCGCCACTGATGCTGCTGCACTTCATCCAGCTGTTCTTCTA
CAACTGGCTGATCAGCCAAACGTGGTTCATCTCGCGATTTCTGGGCAACA
CCTTTTGGTTGATGGGCATGGGCTATTATGTGTACATCACATTTCTGGGA
TACAATTGCATTCCCCATCTGAAAAACACCCGCATCATTCTCATCGCCCT
GCCCATCATCTTTCTACTGTTTCTGGTCGTCACAATTATTGGTTGGAACG
CAACGATATCCTTTGTCAATTTCTACAAGTATCGCGTATATGCAAGCTTT
CTAGACC
BO12191.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9773-PA | 828 | CG9773-RA | 1..825 | 17..841 | 4125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:34:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9773-RA | 1021 | CG9773-RA | 96..920 | 17..841 | 4125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:34:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8675572..8675933 | 708..347 | 1810 | 100 | Minus |
| 3R | 32079331 | 3R | 8676188..8676518 | 347..17 | 1655 | 100 | Minus |
| 3R | 32079331 | 3R | 8675384..8675517 | 841..708 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:34:41 has no hits.
BO12191.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:56 Download gff for
BO12191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9773-PA | 1..828 | 17..842 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:49 Download gff for
BO12191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9773-PA | 1..828 | 17..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:13:11 Download gff for
BO12191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9773-RA | 96..920 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:21:21 Download gff for
BO12191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9773-RA | 96..920 | 17..841 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:21:21 Download gff for
BO12191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8675384..8675517 | 708..841 | 100 | <- | Minus |
| 3R | 8675573..8675932 | 348..707 | 100 | <- | Minus |
| 3R | 8676188..8676518 | 17..347 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:13:11 Download gff for
BO12191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4501106..4501239 | 708..841 | 100 | <- | Minus |
| arm_3R | 4501295..4501654 | 348..707 | 100 | <- | Minus |
| arm_3R | 4501910..4502240 | 17..347 | 100 | | Minus |
BO12191.complete Sequence
859 bp assembled on 2006-10-11
GenBank Submission: FJ632351
> BO12191.complete
GAAGTTATCAGTCGACATGACTCAATATAGCCACGTTAAGTATACACAAT
CGCCGACGCCGTCGGTGGTTTCCGGCTACTCGAGTGCCTCGCGTCTCCAT
TCGCCATTACCGCCACCCGCCAACCACCGGAGGGACTGCCTCTCGGCGAC
CACCAAGAGCTACAAATACCTGCGACGTCTGCTCAAGTTCAATCAAATGG
ACTTCGAGTTTGCCCTGTGGCAGATGCTCTACCTCTTTGTGGCGCCCCAA
AAGGTGTACCGGAACTTCAACTACCGGAAACAGACCAAGTCACAGTTCGC
CCGCGACGATCCGGCCTTTCTGGTCCTCCTGGTCGTCTGCCTATGTGTCA
CCTCCCTGGGCTTTGCGTATGTGCTGGGACTGTCTTTCTGGCAGAGCATC
TCGTTCATATTCTATGTGGTATTCGTGGACTGTATTTTCGTGGGCATCAT
AATAGCCTCGTTCTTCTGGGCGGTGACGAATCGGTATCTGCGCACAAATA
GCCTGGAGCCGGATATCGAGTGGGGCTATGCCTTCGATGTCCATCTAAAT
GCCTTCTTTCCGCCACTGATGCTGCTGCACTTCATCCAGCTGTTCTTCTA
CAACTGGCTGATCAGCCAAACGTGGTTCATCTCGCGATTTCTGGGCAACA
CCTTTTGGTTGATGGGCATGGGCTATTATGTGTACATCACATTTCTGGGA
TACAATTGCATTCCCCATCTGAAAAACACCCGCATCATTCTCATCGCCCT
GCCCATCATCTTTCTACTGTTTCTGGTCGTCACAATTATTGGTTGGAACG
CAACGATATCCTTTGTCAATTTCTACAAGTATCGCGTATATGCAAGCTTT
CTAGACCAT
BO12191.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:27:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9773-RA | 828 | CG9773-PA | 1..825 | 17..841 | 4125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:27:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9773-RA | 1021 | CG9773-RA | 96..920 | 17..841 | 4125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:27:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8675572..8675933 | 708..347 | 1810 | 100 | Minus |
| 3R | 32079331 | 3R | 8676188..8676518 | 347..17 | 1655 | 100 | Minus |
| 3R | 32079331 | 3R | 8675384..8675517 | 841..708 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:27:42 has no hits.
BO12191.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:12 Download gff for
BO12191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9773-RA | 1..828 | 17..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:49 Download gff for
BO12191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9773-RA | 71..895 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:46 Download gff for
BO12191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9773-RA | 96..920 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:12 Download gff for
BO12191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9773-RA | 71..895 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:20 Download gff for
BO12191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9773-RA | 96..920 | 17..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:20 Download gff for
BO12191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8675382..8675517 | 708..843 | 98 | <- | Minus |
| 3R | 8675573..8675932 | 348..707 | 100 | <- | Minus |
| 3R | 8676188..8676518 | 17..347 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:46 Download gff for
BO12191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4501104..4501239 | 708..843 | 98 | <- | Minus |
| arm_3R | 4501295..4501654 | 348..707 | 100 | <- | Minus |
| arm_3R | 4501910..4502240 | 17..347 | 100 | | Minus |
BO12191.pep Sequence
Translation from 16 to 859
> BO12191.pep
MTQYSHVKYTQSPTPSVVSGYSSASRLHSPLPPPANHRRDCLSATTKSYK
YLRRLLKFNQMDFEFALWQMLYLFVAPQKVYRNFNYRKQTKSQFARDDPA
FLVLLVVCLCVTSLGFAYVLGLSFWQSISFIFYVVFVDCIFVGIIIASFF
WAVTNRYLRTNSLEPDIEWGYAFDVHLNAFFPPLMLLHFIQLFFYNWLIS
QTWFISRFLGNTFWLMGMGYYVYITFLGYNCIPHLKNTRIILIALPIIFL
LFLVVTIIGWNATISFVNFYKYRVYASFLDH
BO12191.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9773-PA | 275 | CG9773-PA | 1..275 | 1..275 | 1478 | 100 | Plus |
