Clone BO12192 Report

Search the DGRC for BO12192

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG6337-RA
Protein status:BO12192.pep: validated full length
Sequenced Size:1054

Clone Sequence Records

BO12192.3prime Sequence

819 bp (818 high quality bases) assembled on 2006-04-20

> BO12192.3prime
ATGGTCTAGAAAGCTTGCGGCAAGCGCACTGGGAAAGACGGCATTCTTGG
CAATGGGCTGATTGGACCTGCGCACGATCCTGATGTAACCCTCCTCGCCC
CACGTGTCGCCGAAGGAGTTCAGGCAGCGCCAGTAGTCCAGATTGGAGTC
CACGTCGTGATCGTAGCCCACGACCACCAGGAACTGTGAGCTCTTTGGAT
TGGTCAGGGCACGCGTCTCCTGGACATAGACGCCACTGGAGTACTGCATG
AATCCAAAGGTAGCCGGATTGTACTCGACTATGACGGGGAATCCATTCGA
TACGTAACGCATTACGGCGGCATCATCGTTGTCGGCCACCGTGGAATAGC
CGGCCAACTTCACGCCCACTGACACAGAGGATGGGGGCTGGCACATACCC
GGCGTTTTCAGGCTATTGTTATTCGGATAGTCCACCTCCGGATAGAGATA
CGCATCTGTCAGCTGGGTGAGATAGTTGAGGGCAGCCAGGGGCGTCTGGG
TGCTGCATCCGGTGCCCATGCCCGCACAGTCCAGCAGCTGCTGGGCGGAC
AAGGACGAGGGCAGAGGATTGGCTGTCTGCACGGCATTCATGATCTCCAC
GGCCTTGGCGGTGGCATAGGCCCAACTACTGCTGCAGTTCACGCCCTGAT
CCTCCACCGCCACGGTGAGTCCGAAATCCGTGATAATGTCAAAGCTGGCA
GATGCCGCTTGACTGGCCGGTGGATCACTGGCCGCCGAGGTCACCGTATT
CACGGCTTTGGGCAGCAGGGCTGCGAACTGGATGAGCCGGATGTCCGAGA
ACTGATTCACTGCCTCGCG

BO12192.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6337-PA 1023 CG6337-RA 220..1020 819..19 4005 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6337-RB 1402 CG6337-RB 254..1054 819..19 4005 100 Minus
CG6337-RA 1117 CG6337-RA 254..1054 819..19 4005 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13833923..13834723 19..819 4005 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:51:16 has no hits.

BO12192.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:56 Download gff for BO12192.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6337-PA 220..1023 15..819 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:51 Download gff for BO12192.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6337-PA 220..1023 15..819 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:50:01 Download gff for BO12192.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6337-RA 254..1058 14..819 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:07:56 Download gff for BO12192.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6337-RA 254..1058 14..819 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:07:56 Download gff for BO12192.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13833919..13834723 14..819 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:50:01 Download gff for BO12192.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9721424..9722228 14..819 99   Plus

BO12192.5prime Sequence

820 bp (818 high quality bases) assembled on 2006-04-20

> BO12192.5prime
GAAGTTATCAGTCGACATGTTCAAGTTGCTACTTTGCTGCCTTCTACTAA
CCATCGACAGTGGATGGGCCTTTAATCATGGCCAGGATCTAGTGGACTTT
CAAACTTACGAGGACAATTTCAACAAGACCTATGCCTCAACTTCGGCTCG
CAACTTCGCCAACTACTACTTCATCTACAACCGCAACCAGGTGGCGCAGC
ACAATGCCCAGGCCGATAGGAATCGCACCACCTACCGCGAGGCAGTGAAT
CAGTTCTCGGACATCCGGCTCATCCAGTTCGCAGCCCTGCTGCCCAAAGC
CGTGAATACGGTGACCTCGGCGGCCAGTGATCCACCGGCCAGTCAAGCGG
CATCTGCCAGCTTTGACATTATCACGGATTTCGGACTCACCGTGGCGGTG
GAGGATCAGGGCGTGAACTGCAGCAGTAGTTGGGCCTATGCCACCGCCAA
GGCCGTGGAGATCATGAATGCCGTGCAGACAGCCAATCCTCTGCCCTCGT
CCTTGTCCGCCCAGCAGCTGCTGGACTGTGCGGGCATGGGCACCGGATGC
AGCACCCAGACGCCCCTGGCTGCCCTCAACTATCTCACCCAGCTGACAGA
TGCGTATCTCTATCCGGAGGTGGACTATCCGAATAACAATAGCCTGAAAA
CGCCGGGTATGTGCCAGCCCCCATCCTCTGTGTCAGTGGGCGTGAAGTTG
GCCGGCTATTCCACGGTGGCCGACAACGATGATGCCGCCGTAATGCGTTA
CGTATCGAATGGATTCCCCGTCATAGTCGAGTACAATCCGGCTACCTTTG
GATTCATGCAGTACTCCAGT

BO12192.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG6337-PA 1023 CG6337-RA 1..804 17..820 4020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:52:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG6337-RB 1402 CG6337-RB 30..838 12..820 4030 99.9 Plus
CG6337-RA 1117 CG6337-RA 30..838 12..820 4030 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:52:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13834139..13834848 820..111 3550 100 Minus
2R 25286936 2R 13834966..13835067 113..12 495 99 Minus
Blast to na_te.dros performed on 2015-02-10 21:52:41 has no hits.

BO12192.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:57 Download gff for BO12192.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6337-PA 1..804 17..820 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:52 Download gff for BO12192.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6337-PA 1..804 17..820 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:47:43 Download gff for BO12192.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6337-RA 30..838 12..820 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:14 Download gff for BO12192.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6337-RA 30..838 12..820 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:14 Download gff for BO12192.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13834139..13834846 113..820 100 <- Minus
2R 13834967..13835067 12..112 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:47:43 Download gff for BO12192.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9721644..9722351 113..820 100 <- Minus
arm_2R 9722472..9722572 12..112 99   Minus

BO12192.complete Sequence

1054 bp assembled on 2006-10-11

GenBank Submission: FJ632352

> BO12192.complete
GAAGTTATCAGTCGACATGTTCAAGTTGCTACTTTGCTGCCTTCTACTAA
CCATCGACAGTGGATGGGCCTTTAATCATGGCCAGGATCTAGTGGACTTT
CAAACTTACGAGGACAATTTCAACAAGACCTATGCCTCAACTTCGGCTCG
CAACTTCGCCAACTACTACTTCATCTACAACCGCAACCAGGTGGCGCAGC
ACAATGCCCAGGCCGATAGGAATCGCACCACCTACCGCGAGGCAGTGAAT
CAGTTCTCGGACATCCGGCTCATCCAGTTCGCAGCCCTGCTGCCCAAAGC
CGTGAATACGGTGACCTCGGCGGCCAGTGATCCACCGGCCAGTCAAGCGG
CATCTGCCAGCTTTGACATTATCACGGATTTCGGACTCACCGTGGCGGTG
GAGGATCAGGGCGTGAACTGCAGCAGTAGTTGGGCCTATGCCACCGCCAA
GGCCGTGGAGATCATGAATGCCGTGCAGACAGCCAATCCTCTGCCCTCGT
CCTTGTCCGCCCAGCAGCTGCTGGACTGTGCGGGCATGGGCACCGGATGC
AGCACCCAGACGCCCCTGGCTGCCCTCAACTATCTCACCCAGCTGACAGA
TGCGTATCTCTATCCGGAGGTGGACTATCCGAATAACAATAGCCTGAAAA
CGCCGGGTATGTGCCAGCCCCCATCCTCTGTGTCAGTGGGCGTGAAGTTG
GCCGGCTATTCCACGGTGGCCGACAACGATGATGCCGCCGTAATGCGTTA
CGTATCGAATGGATTCCCCGTCATAGTCGAGTACAATCCGGCTACCTTTG
GATTCATGCAGTACTCCAGTGGCGTCTATGTCCAGGAGACGCGTGCCCTG
ACCAATCCAAAGAGCTCACAGTTCCTGGTGGTCGTGGGCTACGATCACGA
CGTGGACTCCAATCTGGACTACTGGCGCTGCCTGAACTCCTTCGGCGACA
CGTGGGGCGAGGAGGGTTACATCAGGATCGTGCGCAGGTCCAATCAGCCC
ATTGCCAAGAATGCCGTCTTTCCCAGTGCGCTTGCCGCAAGCTTTCTAGA
CCAT

BO12192.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG6337-RB 1023 CG6337-PB 1..1020 17..1036 5100 100 Plus
CG6337-RA 1023 CG6337-PA 1..1020 17..1036 5100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6337-RB 1402 CG6337-RB 30..1054 12..1036 5110 99.9 Plus
CG6337-RA 1117 CG6337-RA 30..1054 12..1036 5110 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13833923..13834848 1036..111 4630 100 Minus
2R 25286936 2R 13834966..13835067 113..12 495 99 Minus
Blast to na_te.dros performed on 2014-11-28 00:41:24 has no hits.

BO12192.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:13 Download gff for BO12192.complete
Subject Subject Range Query Range Percent Splice Strand
CG6337-RA 1..1023 17..1040 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:51 Download gff for BO12192.complete
Subject Subject Range Query Range Percent Splice Strand
CG6337-RA 22..1050 12..1041 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:38 Download gff for BO12192.complete
Subject Subject Range Query Range Percent Splice Strand
CG6337-RA 40..1054 22..1038 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:20 Download gff for BO12192.complete
Subject Subject Range Query Range Percent Splice Strand
CG6337-RA 40..1054 22..1038 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:20 Download gff for BO12192.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13833921..13834846 113..1038 99 <- Minus
2R 13834967..13835057 22..112 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:38 Download gff for BO12192.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9721426..9722351 113..1038 99 <- Minus
arm_2R 9722472..9722562 22..112 100   Minus

BO12192.pep Sequence

Translation from 16 to 1054

> BO12192.pep
MFKLLLCCLLLTIDSGWAFNHGQDLVDFQTYEDNFNKTYASTSARNFANY
YFIYNRNQVAQHNAQADRNRTTYREAVNQFSDIRLIQFAALLPKAVNTVT
SAASDPPASQAASASFDIITDFGLTVAVEDQGVNCSSSWAYATAKAVEIM
NAVQTANPLPSSLSAQQLLDCAGMGTGCSTQTPLAALNYLTQLTDAYLYP
EVDYPNNNSLKTPGMCQPPSSVSVGVKLAGYSTVADNDDAAVMRYVSNGF
PVIVEYNPATFGFMQYSSGVYVQETRALTNPKSSQFLVVVGYDHDVDSNL
DYWRCLNSFGDTWGEEGYIRIVRRSNQPIAKNAVFPSALAASFLDH

BO12192.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG6337-PB 340 CG6337-PB 1..340 1..340 1777 100 Plus
CG6337-PA 340 CG6337-PA 1..340 1..340 1777 100 Plus
CG11459-PB 336 CG11459-PB 29..322 27..326 238 27.8 Plus
CG11459-PA 336 CG11459-PA 29..322 27..326 238 27.8 Plus
CG6347-PA 352 CG6347-PA 32..337 25..325 230 26.4 Plus