Clone Sequence Records
BO12192.3prime Sequence
819 bp (818 high quality bases) assembled on 2006-04-20
> BO12192.3prime
ATGGTCTAGAAAGCTTGCGGCAAGCGCACTGGGAAAGACGGCATTCTTGG
CAATGGGCTGATTGGACCTGCGCACGATCCTGATGTAACCCTCCTCGCCC
CACGTGTCGCCGAAGGAGTTCAGGCAGCGCCAGTAGTCCAGATTGGAGTC
CACGTCGTGATCGTAGCCCACGACCACCAGGAACTGTGAGCTCTTTGGAT
TGGTCAGGGCACGCGTCTCCTGGACATAGACGCCACTGGAGTACTGCATG
AATCCAAAGGTAGCCGGATTGTACTCGACTATGACGGGGAATCCATTCGA
TACGTAACGCATTACGGCGGCATCATCGTTGTCGGCCACCGTGGAATAGC
CGGCCAACTTCACGCCCACTGACACAGAGGATGGGGGCTGGCACATACCC
GGCGTTTTCAGGCTATTGTTATTCGGATAGTCCACCTCCGGATAGAGATA
CGCATCTGTCAGCTGGGTGAGATAGTTGAGGGCAGCCAGGGGCGTCTGGG
TGCTGCATCCGGTGCCCATGCCCGCACAGTCCAGCAGCTGCTGGGCGGAC
AAGGACGAGGGCAGAGGATTGGCTGTCTGCACGGCATTCATGATCTCCAC
GGCCTTGGCGGTGGCATAGGCCCAACTACTGCTGCAGTTCACGCCCTGAT
CCTCCACCGCCACGGTGAGTCCGAAATCCGTGATAATGTCAAAGCTGGCA
GATGCCGCTTGACTGGCCGGTGGATCACTGGCCGCCGAGGTCACCGTATT
CACGGCTTTGGGCAGCAGGGCTGCGAACTGGATGAGCCGGATGTCCGAGA
ACTGATTCACTGCCTCGCG
BO12192.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6337-PA | 1023 | CG6337-RA | 220..1020 | 819..19 | 4005 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6337-RB | 1402 | CG6337-RB | 254..1054 | 819..19 | 4005 | 100 | Minus |
CG6337-RA | 1117 | CG6337-RA | 254..1054 | 819..19 | 4005 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13833923..13834723 | 19..819 | 4005 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:51:16 has no hits.
BO12192.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:56 Download gff for
BO12192.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6337-PA | 220..1023 | 15..819 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:51 Download gff for
BO12192.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6337-PA | 220..1023 | 15..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:50:01 Download gff for
BO12192.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6337-RA | 254..1058 | 14..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:07:56 Download gff for
BO12192.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6337-RA | 254..1058 | 14..819 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:07:56 Download gff for
BO12192.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13833919..13834723 | 14..819 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:50:01 Download gff for
BO12192.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9721424..9722228 | 14..819 | 99 | | Plus |
BO12192.5prime Sequence
820 bp (818 high quality bases) assembled on 2006-04-20
> BO12192.5prime
GAAGTTATCAGTCGACATGTTCAAGTTGCTACTTTGCTGCCTTCTACTAA
CCATCGACAGTGGATGGGCCTTTAATCATGGCCAGGATCTAGTGGACTTT
CAAACTTACGAGGACAATTTCAACAAGACCTATGCCTCAACTTCGGCTCG
CAACTTCGCCAACTACTACTTCATCTACAACCGCAACCAGGTGGCGCAGC
ACAATGCCCAGGCCGATAGGAATCGCACCACCTACCGCGAGGCAGTGAAT
CAGTTCTCGGACATCCGGCTCATCCAGTTCGCAGCCCTGCTGCCCAAAGC
CGTGAATACGGTGACCTCGGCGGCCAGTGATCCACCGGCCAGTCAAGCGG
CATCTGCCAGCTTTGACATTATCACGGATTTCGGACTCACCGTGGCGGTG
GAGGATCAGGGCGTGAACTGCAGCAGTAGTTGGGCCTATGCCACCGCCAA
GGCCGTGGAGATCATGAATGCCGTGCAGACAGCCAATCCTCTGCCCTCGT
CCTTGTCCGCCCAGCAGCTGCTGGACTGTGCGGGCATGGGCACCGGATGC
AGCACCCAGACGCCCCTGGCTGCCCTCAACTATCTCACCCAGCTGACAGA
TGCGTATCTCTATCCGGAGGTGGACTATCCGAATAACAATAGCCTGAAAA
CGCCGGGTATGTGCCAGCCCCCATCCTCTGTGTCAGTGGGCGTGAAGTTG
GCCGGCTATTCCACGGTGGCCGACAACGATGATGCCGCCGTAATGCGTTA
CGTATCGAATGGATTCCCCGTCATAGTCGAGTACAATCCGGCTACCTTTG
GATTCATGCAGTACTCCAGT
BO12192.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6337-PA | 1023 | CG6337-RA | 1..804 | 17..820 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:52:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6337-RB | 1402 | CG6337-RB | 30..838 | 12..820 | 4030 | 99.9 | Plus |
CG6337-RA | 1117 | CG6337-RA | 30..838 | 12..820 | 4030 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:52:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13834139..13834848 | 820..111 | 3550 | 100 | Minus |
2R | 25286936 | 2R | 13834966..13835067 | 113..12 | 495 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:52:41 has no hits.
BO12192.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:28:57 Download gff for
BO12192.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6337-PA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:52 Download gff for
BO12192.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6337-PA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:47:43 Download gff for
BO12192.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6337-RA | 30..838 | 12..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:14 Download gff for
BO12192.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6337-RA | 30..838 | 12..820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:14 Download gff for
BO12192.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13834139..13834846 | 113..820 | 100 | <- | Minus |
2R | 13834967..13835067 | 12..112 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:47:43 Download gff for
BO12192.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9721644..9722351 | 113..820 | 100 | <- | Minus |
arm_2R | 9722472..9722572 | 12..112 | 99 | | Minus |
BO12192.complete Sequence
1054 bp assembled on 2006-10-11
GenBank Submission: FJ632352
> BO12192.complete
GAAGTTATCAGTCGACATGTTCAAGTTGCTACTTTGCTGCCTTCTACTAA
CCATCGACAGTGGATGGGCCTTTAATCATGGCCAGGATCTAGTGGACTTT
CAAACTTACGAGGACAATTTCAACAAGACCTATGCCTCAACTTCGGCTCG
CAACTTCGCCAACTACTACTTCATCTACAACCGCAACCAGGTGGCGCAGC
ACAATGCCCAGGCCGATAGGAATCGCACCACCTACCGCGAGGCAGTGAAT
CAGTTCTCGGACATCCGGCTCATCCAGTTCGCAGCCCTGCTGCCCAAAGC
CGTGAATACGGTGACCTCGGCGGCCAGTGATCCACCGGCCAGTCAAGCGG
CATCTGCCAGCTTTGACATTATCACGGATTTCGGACTCACCGTGGCGGTG
GAGGATCAGGGCGTGAACTGCAGCAGTAGTTGGGCCTATGCCACCGCCAA
GGCCGTGGAGATCATGAATGCCGTGCAGACAGCCAATCCTCTGCCCTCGT
CCTTGTCCGCCCAGCAGCTGCTGGACTGTGCGGGCATGGGCACCGGATGC
AGCACCCAGACGCCCCTGGCTGCCCTCAACTATCTCACCCAGCTGACAGA
TGCGTATCTCTATCCGGAGGTGGACTATCCGAATAACAATAGCCTGAAAA
CGCCGGGTATGTGCCAGCCCCCATCCTCTGTGTCAGTGGGCGTGAAGTTG
GCCGGCTATTCCACGGTGGCCGACAACGATGATGCCGCCGTAATGCGTTA
CGTATCGAATGGATTCCCCGTCATAGTCGAGTACAATCCGGCTACCTTTG
GATTCATGCAGTACTCCAGTGGCGTCTATGTCCAGGAGACGCGTGCCCTG
ACCAATCCAAAGAGCTCACAGTTCCTGGTGGTCGTGGGCTACGATCACGA
CGTGGACTCCAATCTGGACTACTGGCGCTGCCTGAACTCCTTCGGCGACA
CGTGGGGCGAGGAGGGTTACATCAGGATCGTGCGCAGGTCCAATCAGCCC
ATTGCCAAGAATGCCGTCTTTCCCAGTGCGCTTGCCGCAAGCTTTCTAGA
CCAT
BO12192.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:41:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6337-RB | 1023 | CG6337-PB | 1..1020 | 17..1036 | 5100 | 100 | Plus |
CG6337-RA | 1023 | CG6337-PA | 1..1020 | 17..1036 | 5100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:41:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6337-RB | 1402 | CG6337-RB | 30..1054 | 12..1036 | 5110 | 99.9 | Plus |
CG6337-RA | 1117 | CG6337-RA | 30..1054 | 12..1036 | 5110 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:41:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13833923..13834848 | 1036..111 | 4630 | 100 | Minus |
2R | 25286936 | 2R | 13834966..13835067 | 113..12 | 495 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:41:24 has no hits.
BO12192.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:13 Download gff for
BO12192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6337-RA | 1..1023 | 17..1040 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:51 Download gff for
BO12192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6337-RA | 22..1050 | 12..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:38 Download gff for
BO12192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6337-RA | 40..1054 | 22..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:20 Download gff for
BO12192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6337-RA | 40..1054 | 22..1038 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:20 Download gff for
BO12192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13833921..13834846 | 113..1038 | 99 | <- | Minus |
2R | 13834967..13835057 | 22..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:38 Download gff for
BO12192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9721426..9722351 | 113..1038 | 99 | <- | Minus |
arm_2R | 9722472..9722562 | 22..112 | 100 | | Minus |
BO12192.pep Sequence
Translation from 16 to 1054
> BO12192.pep
MFKLLLCCLLLTIDSGWAFNHGQDLVDFQTYEDNFNKTYASTSARNFANY
YFIYNRNQVAQHNAQADRNRTTYREAVNQFSDIRLIQFAALLPKAVNTVT
SAASDPPASQAASASFDIITDFGLTVAVEDQGVNCSSSWAYATAKAVEIM
NAVQTANPLPSSLSAQQLLDCAGMGTGCSTQTPLAALNYLTQLTDAYLYP
EVDYPNNNSLKTPGMCQPPSSVSVGVKLAGYSTVADNDDAAVMRYVSNGF
PVIVEYNPATFGFMQYSSGVYVQETRALTNPKSSQFLVVVGYDHDVDSNL
DYWRCLNSFGDTWGEEGYIRIVRRSNQPIAKNAVFPSALAASFLDH
BO12192.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6337-PB | 340 | CG6337-PB | 1..340 | 1..340 | 1777 | 100 | Plus |
CG6337-PA | 340 | CG6337-PA | 1..340 | 1..340 | 1777 | 100 | Plus |
CG11459-PB | 336 | CG11459-PB | 29..322 | 27..326 | 238 | 27.8 | Plus |
CG11459-PA | 336 | CG11459-PA | 29..322 | 27..326 | 238 | 27.8 | Plus |
CG6347-PA | 352 | CG6347-PA | 32..337 | 25..325 | 230 | 26.4 | Plus |