Clone BO12194 Report

Search the DGRC for BO12194

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:94
Vector:pDNR-Dual
Associated Gene/Transcriptmms4-RA
Protein status:BO12194.pep: Imported from assembly
Sequenced Size:962

Clone Sequence Records

BO12194.complete Sequence

962 bp assembled on 2009-07-30

GenBank Submission: KX796628

> BO12194.complete
GAAGTTATCAGGTCGACATGTCAAATAAAGTGGACAAGCTGCACAAGCAG
GCTTTACGCGAACAACAGAAGCGTATTAAGCCCGGAGAATGTATGAAATA
TGTGCGGATGGTCATAGATGCCGGATTTCTGGGCATTCCCGTGGGCCAGG
AGGCACTGCAGCAATTGAATGCGACGGGTTTGAAGTATGAAATAAGGAGC
TTGCCCGTGAGCCACTGCATCCTGTGGGAACGCAATGTTGGCCAGCAGAC
GATTGCTCTGGGCAGCAGTCCCACCGGCCTAGATGAAGCCTGGAAATCGG
AAAACCAAGTGGTCCAGTGGCTATCCGAAAGCAGCTTCCAACGGGCTGTA
AAGGATCAAAGTCTAGTTTGCCTGGGACCGCGCTTGCAGGACTCATTTCC
GGACTGCCAGTACACCATTGCCCTGCCAACGCTCCGTCACAGCAAGCATG
GCAGCTCATCCAGCCAGGACGCTCTGATTGAGATGCAGTTGCTCCAGGAG
CTACACGTGGAACAGCTAGATCAACCCGAAAGCCAGGATCTAGTGGCCCT
GCTGCAGCGCTATACAAAAGCAATAGCCGAAGCCCCCTATAAGAAGCAAC
GCAACGAGACATTGGGAGGCTTCAAGAAATACCTGGCCAACGACAAGAAG
CAGTGCGTCCGTGTGGATCAGGGAAACGGATACGGAAGACTCTGGCAGCA
GCATCTGAATCGACTGCCAATGGTCACGCTGGAAGTGGCCGAGTCCATAA
TAGCGCAGTATCCCTGTCCCAAGAAACTGATCGATCATTTCTCCAGCGAT
CCACTGGCTGTCCAAAGTCTCGCCGATTTGAAGATCAAGCGATGCAATGG
ACCACAGCCTCTTCACACCGAGCGACGTATTGGAAATGTTCTCAGCAACA
AACTGTATACATTGTATACTGCCAAGGATCCCAATACTCTAATTGCAAGC
TTTCTAGACCAT

BO12194.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
mms4-RA 930 CG12936-PA 1..927 18..944 4635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
mms4-RA 1138 CG12936-RA 48..974 18..944 4635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10811125..10812051 18..944 4635 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:26:32 has no hits.

BO12194.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-31 08:53:29 Download gff for BO12194.complete
Subject Subject Range Query Range Percent Splice Strand
CG12936-RA 30..958 17..946 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:41 Download gff for BO12194.complete
Subject Subject Range Query Range Percent Splice Strand
mms4-RA 46..974 17..946 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:40 Download gff for BO12194.complete
Subject Subject Range Query Range Percent Splice Strand
mms4-RA 46..974 17..946 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:40 Download gff for BO12194.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10811123..10812051 17..946 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:41 Download gff for BO12194.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6698628..6699556 17..946 99   Plus

BO12194.3prime Sequence

889 bp (793 high quality bases) assembled on 2006-04-20

> BO12194.3prime
ATGGTCTAGAAAGCTTGCAATTAGAGTATTGGGATCCTTGGCAGTATACA
ATGTATACAGTTTGTTGCTGAGAACATTTCCAATACGTCGCTCGGTGTGA
AGAGGCTGTGGTCCATTGCATCGCTTGATCTTCAAATCGGCGAGACTTTG
GACAGCCAGTGGATCGCTGGAGAAATGATCGATCAGTTTCTTGGGACAGG
GATACTGCGCTATTATGGACTCGGCCACTTCCAGCGTGACCATTGGCAGT
CGATTCAGATGCTGCTGCCAGAGTCTTCCGTATCCGTTTCCCTGATCCAC
ACGGACGCACTGCTTCTTGTCGTTGGCCAGGTATTTCTTGAAGCCTCCCA
ATGTCTCGTTGCGTTGCTTCTTATAGGGGGCTTCGGCTATTGCTTTTGTA
TAGCGCTGCAGCAGGGCCACTAGATCCTGGCTTTCGGGTTGATCTAGCTG
TTCCACGTGTAGCTCCTGGAGCAACTGCATCTCAATCAGAGCGTCCTGGC
TGGATGAGCTGCCATGCTTGCTGTGACGGAGCGTTGGCAGGGCAATGGTG
TACTGGCAGTCCGGAAATGAGTCCTGCAAGCGCGGTCCCAGGCAAACTAG
ACTTTGATCCTTTACAGCCCGTTGGAAGCTGCTTTCGGATAGCCACTGGA
CCACTTGGTTTTCCGATTTCCAGGCTTCATCTAGGCCGGTGGGACTGCTG
CCCAGAGCAATCGTCTGCTGGCCAACATTGCGTTCCCACAGGATGCAGTG
GCTCACGGGCAAGCTCCTTATTTCATACTTCAAACCCGTCGCATTCAATT
GCTGCAGTGCCTCCTGGCCCACGGGAATGCCCAGAAATCCGGCATCTATG
ACCATCCGCACATATTTCATACATTCTCCGGGCTTAATA

BO12194.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG12936-PA 930 CG12936-RA 57..927 889..19 4355 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
mms4-RA 1138 CG12936-RA 104..974 889..19 4355 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:33:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10811181..10812051 889..19 4355 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:33:18 has no hits.

BO12194.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:00 Download gff for BO12194.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12936-PA 58..930 18..888 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:56 Download gff for BO12194.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12936-PA 58..930 18..888 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:29:14 Download gff for BO12194.3prime
Subject Subject Range Query Range Percent Splice Strand
mms4-RA 105..974 19..888 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:37 Download gff for BO12194.3prime
Subject Subject Range Query Range Percent Splice Strand
mms4-RA 105..974 19..888 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:37 Download gff for BO12194.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10811182..10812051 19..888 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:29:14 Download gff for BO12194.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6698687..6699556 19..888 100   Minus

BO12194.5prime Sequence

860 bp (824 high quality bases) assembled on 2006-04-20

> BO12194.5prime
GAAGTTATCAGGTCGACATGTCAAATAAAGTGGACAAGCTGCACAAGCAG
GCTTTACGCGAACAACAGAAGCGTATTAAGCCCGGAGAATGTATGAAATA
TGTGCGGATGGTCATAGATGCCGGATTTCTGGGCATTCCCGTGGGCCAGG
AGGCACTGCAGCAATTGAATGCGACGGGTTTGAAGTATGAAATAAGGAGC
TTGCCCGTGAGCCACTGCATCCTGTGGGAACGCAATGTTGGCCAGCAGAC
GATTGCTCTGGGCAGCAGTCCCACCGGCCTAGATGAAGCCTGGAAATCGG
AAAACCAAGTGGTCCAGTGGCTATCCGAAAGCAGCTTCCAACGGGCTGTA
AAGGATCAAAGTCTAGTTTGCCTGGGACCGCGCTTGCAGGACTCATTTCC
GGACTGCCAGTACACCATTGCCCTGCCAACGCTCCGTCACAGCAAGCATG
GCAGCTCATCCAGCCAGGACGCTCTGATTGAGATGCAGTTGCTCCAGGAG
CTACACGTGGAACAGCTAGATCAACCCGAAAGCCAGGATCTAGTGGCCCT
GCTGCAGCGCTATACAAAAGCAATAGCCGAAGCCCCCTATAAGAAGCAAC
GCAACGAGACATTGGGAGGCTTCAAGAAATACCTGGCCAACGACAAGAAG
CAGTGCGTCCGTGTGGATCAGGGAAACGGATACGGAAGACTCTGGCAGCA
GCATCTGAATCGACTGCCAATGGTCACGCTGGAAGTGGCCGAGTCCATAA
TAGCGCAGTATCCCTGTCCCAAGAAACTGATCGATCATTTCTCCAGCGAT
CCACTGGCTGTCCAAAGTCTCGCCGATTTGAAGATCAAGCGATGCAATGG
ACCACAGCCT

BO12194.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12936-PA 930 CG12936-RA 1..843 18..860 4215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
mms4-RA 1138 CG12936-RA 48..890 18..860 4215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:24:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10811125..10811967 18..860 4215 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:24:45 has no hits.

BO12194.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:01 Download gff for BO12194.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12936-PA 1..843 18..860 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:57 Download gff for BO12194.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12936-PA 1..843 18..860 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:23:17 Download gff for BO12194.5prime
Subject Subject Range Query Range Percent Splice Strand
mms4-RA 48..890 18..860 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:09 Download gff for BO12194.5prime
Subject Subject Range Query Range Percent Splice Strand
mms4-RA 48..890 18..860 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:09 Download gff for BO12194.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10811125..10811967 18..860 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:23:17 Download gff for BO12194.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6698630..6699472 18..860 100   Plus

BO12194.pep Sequence

Translation from 17 to 962

> BO12194.pep
MSNKVDKLHKQALREQQKRIKPGECMKYVRMVIDAGFLGIPVGQEALQQL
NATGLKYEIRSLPVSHCILWERNVGQQTIALGSSPTGLDEAWKSENQVVQ
WLSESSFQRAVKDQSLVCLGPRLQDSFPDCQYTIALPTLRHSKHGSSSSQ
DALIEMQLLQELHVEQLDQPESQDLVALLQRYTKAIAEAPYKKQRNETLG
GFKKYLANDKKQCVRVDQGNGYGRLWQQHLNRLPMVTLEVAESIIAQYPC
PKKLIDHFSSDPLAVQSLADLKIKRCNGPQPLHTERRIGNVLSNKLYTLY
TAKDPNTLIASFLDH

BO12194.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
mms4-PA 309 CG12936-PA 1..309 1..309 1609 100 Plus