Clone Sequence Records
BO12194.complete Sequence
962 bp assembled on 2009-07-30
GenBank Submission: KX796628
> BO12194.complete
GAAGTTATCAGGTCGACATGTCAAATAAAGTGGACAAGCTGCACAAGCAG
GCTTTACGCGAACAACAGAAGCGTATTAAGCCCGGAGAATGTATGAAATA
TGTGCGGATGGTCATAGATGCCGGATTTCTGGGCATTCCCGTGGGCCAGG
AGGCACTGCAGCAATTGAATGCGACGGGTTTGAAGTATGAAATAAGGAGC
TTGCCCGTGAGCCACTGCATCCTGTGGGAACGCAATGTTGGCCAGCAGAC
GATTGCTCTGGGCAGCAGTCCCACCGGCCTAGATGAAGCCTGGAAATCGG
AAAACCAAGTGGTCCAGTGGCTATCCGAAAGCAGCTTCCAACGGGCTGTA
AAGGATCAAAGTCTAGTTTGCCTGGGACCGCGCTTGCAGGACTCATTTCC
GGACTGCCAGTACACCATTGCCCTGCCAACGCTCCGTCACAGCAAGCATG
GCAGCTCATCCAGCCAGGACGCTCTGATTGAGATGCAGTTGCTCCAGGAG
CTACACGTGGAACAGCTAGATCAACCCGAAAGCCAGGATCTAGTGGCCCT
GCTGCAGCGCTATACAAAAGCAATAGCCGAAGCCCCCTATAAGAAGCAAC
GCAACGAGACATTGGGAGGCTTCAAGAAATACCTGGCCAACGACAAGAAG
CAGTGCGTCCGTGTGGATCAGGGAAACGGATACGGAAGACTCTGGCAGCA
GCATCTGAATCGACTGCCAATGGTCACGCTGGAAGTGGCCGAGTCCATAA
TAGCGCAGTATCCCTGTCCCAAGAAACTGATCGATCATTTCTCCAGCGAT
CCACTGGCTGTCCAAAGTCTCGCCGATTTGAAGATCAAGCGATGCAATGG
ACCACAGCCTCTTCACACCGAGCGACGTATTGGAAATGTTCTCAGCAACA
AACTGTATACATTGTATACTGCCAAGGATCCCAATACTCTAATTGCAAGC
TTTCTAGACCAT
BO12194.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:26:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mms4-RA | 930 | CG12936-PA | 1..927 | 18..944 | 4635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mms4-RA | 1138 | CG12936-RA | 48..974 | 18..944 | 4635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10811125..10812051 | 18..944 | 4635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:26:32 has no hits.
BO12194.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-31 08:53:29 Download gff for
BO12194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12936-RA | 30..958 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:41 Download gff for
BO12194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mms4-RA | 46..974 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:40 Download gff for
BO12194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mms4-RA | 46..974 | 17..946 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:40 Download gff for
BO12194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10811123..10812051 | 17..946 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:41 Download gff for
BO12194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6698628..6699556 | 17..946 | 99 | | Plus |
BO12194.3prime Sequence
889 bp (793 high quality bases) assembled on 2006-04-20
> BO12194.3prime
ATGGTCTAGAAAGCTTGCAATTAGAGTATTGGGATCCTTGGCAGTATACA
ATGTATACAGTTTGTTGCTGAGAACATTTCCAATACGTCGCTCGGTGTGA
AGAGGCTGTGGTCCATTGCATCGCTTGATCTTCAAATCGGCGAGACTTTG
GACAGCCAGTGGATCGCTGGAGAAATGATCGATCAGTTTCTTGGGACAGG
GATACTGCGCTATTATGGACTCGGCCACTTCCAGCGTGACCATTGGCAGT
CGATTCAGATGCTGCTGCCAGAGTCTTCCGTATCCGTTTCCCTGATCCAC
ACGGACGCACTGCTTCTTGTCGTTGGCCAGGTATTTCTTGAAGCCTCCCA
ATGTCTCGTTGCGTTGCTTCTTATAGGGGGCTTCGGCTATTGCTTTTGTA
TAGCGCTGCAGCAGGGCCACTAGATCCTGGCTTTCGGGTTGATCTAGCTG
TTCCACGTGTAGCTCCTGGAGCAACTGCATCTCAATCAGAGCGTCCTGGC
TGGATGAGCTGCCATGCTTGCTGTGACGGAGCGTTGGCAGGGCAATGGTG
TACTGGCAGTCCGGAAATGAGTCCTGCAAGCGCGGTCCCAGGCAAACTAG
ACTTTGATCCTTTACAGCCCGTTGGAAGCTGCTTTCGGATAGCCACTGGA
CCACTTGGTTTTCCGATTTCCAGGCTTCATCTAGGCCGGTGGGACTGCTG
CCCAGAGCAATCGTCTGCTGGCCAACATTGCGTTCCCACAGGATGCAGTG
GCTCACGGGCAAGCTCCTTATTTCATACTTCAAACCCGTCGCATTCAATT
GCTGCAGTGCCTCCTGGCCCACGGGAATGCCCAGAAATCCGGCATCTATG
ACCATCCGCACATATTTCATACATTCTCCGGGCTTAATA
BO12194.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12936-PA | 930 | CG12936-RA | 57..927 | 889..19 | 4355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:33:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mms4-RA | 1138 | CG12936-RA | 104..974 | 889..19 | 4355 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:33:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10811181..10812051 | 889..19 | 4355 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:33:18 has no hits.
BO12194.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:00 Download gff for
BO12194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12936-PA | 58..930 | 18..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:56 Download gff for
BO12194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12936-PA | 58..930 | 18..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:29:14 Download gff for
BO12194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mms4-RA | 105..974 | 19..888 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:37 Download gff for
BO12194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mms4-RA | 105..974 | 19..888 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:37 Download gff for
BO12194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10811182..10812051 | 19..888 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:29:14 Download gff for
BO12194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6698687..6699556 | 19..888 | 100 | | Minus |
BO12194.5prime Sequence
860 bp (824 high quality bases) assembled on 2006-04-20
> BO12194.5prime
GAAGTTATCAGGTCGACATGTCAAATAAAGTGGACAAGCTGCACAAGCAG
GCTTTACGCGAACAACAGAAGCGTATTAAGCCCGGAGAATGTATGAAATA
TGTGCGGATGGTCATAGATGCCGGATTTCTGGGCATTCCCGTGGGCCAGG
AGGCACTGCAGCAATTGAATGCGACGGGTTTGAAGTATGAAATAAGGAGC
TTGCCCGTGAGCCACTGCATCCTGTGGGAACGCAATGTTGGCCAGCAGAC
GATTGCTCTGGGCAGCAGTCCCACCGGCCTAGATGAAGCCTGGAAATCGG
AAAACCAAGTGGTCCAGTGGCTATCCGAAAGCAGCTTCCAACGGGCTGTA
AAGGATCAAAGTCTAGTTTGCCTGGGACCGCGCTTGCAGGACTCATTTCC
GGACTGCCAGTACACCATTGCCCTGCCAACGCTCCGTCACAGCAAGCATG
GCAGCTCATCCAGCCAGGACGCTCTGATTGAGATGCAGTTGCTCCAGGAG
CTACACGTGGAACAGCTAGATCAACCCGAAAGCCAGGATCTAGTGGCCCT
GCTGCAGCGCTATACAAAAGCAATAGCCGAAGCCCCCTATAAGAAGCAAC
GCAACGAGACATTGGGAGGCTTCAAGAAATACCTGGCCAACGACAAGAAG
CAGTGCGTCCGTGTGGATCAGGGAAACGGATACGGAAGACTCTGGCAGCA
GCATCTGAATCGACTGCCAATGGTCACGCTGGAAGTGGCCGAGTCCATAA
TAGCGCAGTATCCCTGTCCCAAGAAACTGATCGATCATTTCTCCAGCGAT
CCACTGGCTGTCCAAAGTCTCGCCGATTTGAAGATCAAGCGATGCAATGG
ACCACAGCCT
BO12194.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12936-PA | 930 | CG12936-RA | 1..843 | 18..860 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:24:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mms4-RA | 1138 | CG12936-RA | 48..890 | 18..860 | 4215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:24:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10811125..10811967 | 18..860 | 4215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:24:45 has no hits.
BO12194.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:01 Download gff for
BO12194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12936-PA | 1..843 | 18..860 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:57 Download gff for
BO12194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12936-PA | 1..843 | 18..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:23:17 Download gff for
BO12194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mms4-RA | 48..890 | 18..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:09 Download gff for
BO12194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mms4-RA | 48..890 | 18..860 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:09 Download gff for
BO12194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10811125..10811967 | 18..860 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:23:17 Download gff for
BO12194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6698630..6699472 | 18..860 | 100 | | Plus |
BO12194.pep Sequence
Translation from 17 to 962
> BO12194.pep
MSNKVDKLHKQALREQQKRIKPGECMKYVRMVIDAGFLGIPVGQEALQQL
NATGLKYEIRSLPVSHCILWERNVGQQTIALGSSPTGLDEAWKSENQVVQ
WLSESSFQRAVKDQSLVCLGPRLQDSFPDCQYTIALPTLRHSKHGSSSSQ
DALIEMQLLQELHVEQLDQPESQDLVALLQRYTKAIAEAPYKKQRNETLG
GFKKYLANDKKQCVRVDQGNGYGRLWQQHLNRLPMVTLEVAESIIAQYPC
PKKLIDHFSSDPLAVQSLADLKIKRCNGPQPLHTERRIGNVLSNKLYTLY
TAKDPNTLIASFLDH
BO12194.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:29:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mms4-PA | 309 | CG12936-PA | 1..309 | 1..309 | 1609 | 100 | Plus |