Clone Sequence Records
BO12195.3prime Sequence
843 bp (841 high quality bases) assembled on 2006-04-20
> BO12195.3prime
ATGGTCTAGAAAGCTTGCCGCCAGCTTGCCATTGTGCGCCTCGCGATATT
TGGACAGCTTGTCCATGTACTCGTCATGCTGCTCCAAGGTGGCCAGCAGG
CCCTCCGTATTGACTGGCGATTCCTCTGGTCCGTAGTTAATCAACTGATC
GTTCAGCGTGGTCATTGTGCCGCCCAATGCGTGCAGAATAGCATCGCCGG
CGCAAATGTCCCACTTCTTGATCTTCGACGTGTGCAAATAGGCGGTGGCA
TTGTTGGCCACCACCTGGAGCACCTTGTAGCCAGCTCCCGCCGCCGTCAG
CAGGCTGACATTCTCGCCAAAGATGCCCCTCGCCAGATCCTTGGCACCTG
CCGTGTGGGATCGCGAGACTGTAATGATGGGCGCCTGATTGTTTGGCGAA
TGCTGCGGATGCAGATTGGATAGGTACTCAGACATCGAGTTGCCCACCCA
CGCCCACGCGGTTTGTCCATTGAACGGGCTGTGGATCACGCCAATGATGG
GCCTTCCGGCCACTGCCACGCACACCATGGTGGTCACGTACTCGTATAGC
TCCTCGGTGAACTCCTTGGTGGCATCCAACGGATCTACCCAAACAGTGAC
ATCCTGGGCATTTACGGTCACATCCGGTATCTGTGCGGTCTCGTGGAGGA
CCGTTGGATCTAGATCATAGCCGTGTGCCTGCTTGCAGTGCTCCTTGTCC
TCCTCGGAGAAGATTTGTACGCGGGGAAAGATTCGCTGCAGGCCCTGCTT
CATCACACAATGTGACCGGCCGTCGGCATCCGTGAAGGGATCATTGACGC
CCTCGTCCGTCTTGCCCTTGCTGCGCTCCTTCAGCTGGCGACT
BO12195.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15743-PA | 1068 | CG15743-RA | 241..1065 | 843..19 | 4125 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:23:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15743-RB | 1450 | CG15743-RB | 376..1200 | 843..19 | 4125 | 100 | Minus |
CG15743-RC | 1959 | CG15743-RC | 885..1709 | 843..19 | 4125 | 100 | Minus |
CG15743-RA | 1650 | CG15743-RA | 576..1400 | 843..19 | 4125 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:23:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13286951..13287491 | 559..19 | 2690 | 99.8 | Minus |
X | 23542271 | X | 13286591..13286879 | 843..555 | 1445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:23:38 has no hits.
BO12195.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:02 Download gff for
BO12195.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15743-PA | 241..1068 | 18..843 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:59 Download gff for
BO12195.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15743-PA | 241..1068 | 18..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:12 Download gff for
BO12195.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15743-RA | 576..1400 | 19..843 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:15:55 Download gff for
BO12195.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15743-RA | 576..1400 | 19..843 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:15:55 Download gff for
BO12195.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13286591..13286879 | 555..843 | 100 | -> | Minus |
X | 13286956..13287491 | 19..554 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:12 Download gff for
BO12195.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13180624..13180912 | 555..843 | 100 | -> | Minus |
arm_X | 13180989..13181524 | 19..554 | 100 | | Minus |
BO12195.5prime Sequence
868 bp (828 high quality bases) assembled on 2006-04-20
> BO12195.5prime
GAAGTTATCAGTCGACATGAGCGAAGACAAGATGAACGGACGCTCCATTC
GCATCAACCGGCTGCCGGCCACCATTGTGGCCATCCTGCTGACCTTTGTC
CTGGTCTACTTCCTCAATTTCCATCAGGAGGAGCGGCCAGCGATCTACGG
CATGCTGCGCAGTGAGAATCCCAGCCGCGTCAATCTACGCAAGATGCTAA
TAGCCGCCATACAGGCCGCCCAGCGTGGCGGTCTCGAGGTACTGGACGTG
GCCCGGAGTCGCCAGCTGAAGGAGCGCAGCAAGGGCAAGACGGACGAGGG
CGTCAATGATCCCTTCACGGATGCCGACGGCCGGTCACATTGTGTGATGA
AGCAGGGCCTGCAGCGAATCTTTCCCCGCGTACAAATCTTCTCCGAGGAG
GACAAGGAGCACTGCAAGCAGGCACACGGCTATGATCTAGATCCAACGGT
CCTCCACGAGACCGCACAGATACCGGATGTGACCGTAAATGCCCAGGATG
TCACTGTTTGGGTAGATCCGTTGGATGCCACCAAGGAGTTCACCGAGGAG
CTATACGAGTACGTGACCACCATGGTGTGCGTGGCAGTGGCCGGAAGGCC
CATCATTGGCGTGATCCACAGCCCGTTCAATGGACAAACCGCGTGGGCGT
GGGTGGGCAACTCGATGTCTGAGTACCTATCCAATCTGCATCCGCAGCAT
TCGCCAAACAATCAGGCGCCCATCATTACAGTCTCGCGATCCCACACGGC
AGGTGCCAAGGATCTGGCGAGGGGCATCTTTGGCGAGAATGTCAGCCTGC
TGACGGCGGCGGGAGCTGGCTACAAGGTGCTCCCGGTGGTGGCCAACAAT
GCCACCGCCTATTTGCAC
BO12195.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15743-PA | 1068 | CG15743-RA | 1..852 | 17..868 | 4235 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:22:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15743-RB | 1450 | CG15743-RB | 136..987 | 17..868 | 4245 | 99.9 | Plus |
CG15743-RC | 1959 | CG15743-RC | 645..1496 | 17..868 | 4245 | 99.9 | Plus |
CG15743-RA | 1650 | CG15743-RA | 336..1187 | 17..868 | 4245 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:21:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13286351..13286879 | 17..545 | 2645 | 100 | Plus |
X | 23542271 | X | 13286951..13287278 | 541..868 | 1610 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:21:59 has no hits.
BO12195.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:03 Download gff for
BO12195.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15743-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:00 Download gff for
BO12195.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15743-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:22:38 Download gff for
BO12195.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15743-RA | 336..1187 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:50 Download gff for
BO12195.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15743-RA | 336..1187 | 17..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:50 Download gff for
BO12195.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13286351..13286879 | 17..545 | 100 | -> | Plus |
X | 13286956..13287278 | 546..868 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:22:38 Download gff for
BO12195.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13180384..13180912 | 17..545 | 100 | -> | Plus |
arm_X | 13180989..13181311 | 546..868 | 99 | | Plus |
BO12195.complete Sequence
1099 bp assembled on 2006-10-11
GenBank Submission: FJ632353
> BO12195.complete
GAAGTTATCAGTCGACATGAGCGAAGACAAGATGAACGGACGCTCCATTC
GCATCAACCGGCTGCCGGCCACCATTGTGGCCATCCTGCTGACCTTTGTC
CTGGTCTACTTCCTCAATTTCCATCAGGAGGAGCGGCCAGCGATCTACGG
CATGCTGCGCAGTGAGAATCCCAGCCGCGTCAATCTACGCAAGATGCTAA
TAGCCGCCATACAGGCCGCCCAGCGTGGCGGTCTCGAGGTACTGGACGTG
GCCCGGAGTCGCCAGCTGAAGGAGCGCAGCAAGGGCAAGACGGACGAGGG
CGTCAATGATCCCTTCACGGATGCCGACGGCCGGTCACATTGTGTGATGA
AGCAGGGCCTGCAGCGAATCTTTCCCCGCGTACAAATCTTCTCCGAGGAG
GACAAGGAGCACTGCAAGCAGGCACACGGCTATGATCTAGATCCAACGGT
CCTCCACGAGACCGCACAGATACCGGATGTGACCGTAAATGCCCAGGATG
TCACTGTTTGGGTAGATCCGTTGGATGCCACCAAGGAGTTCACCGAGGAG
CTATACGAGTACGTGACCACCATGGTGTGCGTGGCAGTGGCCGGAAGGCC
CATCATTGGCGTGATCCACAGCCCGTTCAATGGACAAACCGCGTGGGCGT
GGGTGGGCAACTCGATGTCTGAGTACCTATCCAATCTGCATCCGCAGCAT
TCGCCAAACAATCAGGCGCCCATCATTACAGTCTCGCGATCCCACACGGC
AGGTGCCAAGGATCTGGCGAGGGGCATCTTTGGCGAGAATGTCAGCCTGC
TGACGGCGGCGGGAGCTGGCTACAAGGTGCTCCAGGTGGTGGCCAACAAT
GCCACCGCCTATTTGCACACGTCGAAGATCAAGAAGTGGGACATTTGCGC
CGGCGATGCTATTCTGCACGCATTGGGCGGCACAATGACCACGCTGAACG
ATCAGTTGATTAACTACGGACCAGAGGAATCGCCAGTCAATACGGAGGGC
CTGCTGGCCACCTTGGAGCAGCATGACGAGTACATGGACAAGCTGTCCAA
ATATCGCGAGGCGCACAATGGCAAGCTGGCGGCAAGCTTTCTAGACCAT
BO12195.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:48:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15743-RB | 1068 | CG15743-PB | 1..1065 | 17..1081 | 5325 | 100 | Plus |
CG15743-RC | 1068 | CG15743-PC | 1..1065 | 17..1081 | 5325 | 100 | Plus |
CG15743-RA | 1068 | CG15743-PA | 1..1065 | 17..1081 | 5325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:48:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15743-RB | 1450 | CG15743-RB | 136..1200 | 17..1081 | 5325 | 100 | Plus |
CG15743-RC | 1959 | CG15743-RC | 645..1709 | 17..1081 | 5325 | 100 | Plus |
CG15743-RA | 1650 | CG15743-RA | 336..1400 | 17..1081 | 5325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:48:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13286951..13287491 | 541..1081 | 2690 | 99.8 | Plus |
X | 23542271 | X | 13286351..13286879 | 17..545 | 2645 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:48:47 has no hits.
BO12195.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:14 Download gff for
BO12195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15743-RA | 1..1068 | 17..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:52 Download gff for
BO12195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15743-RA | 322..1386 | 17..1081 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:13 Download gff for
BO12195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15743-RA | 336..1400 | 17..1083 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:14 Download gff for
BO12195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15743-RA | 322..1386 | 17..1081 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:33 Download gff for
BO12195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15743-RA | 336..1400 | 17..1083 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:33 Download gff for
BO12195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13286351..13286879 | 17..545 | 100 | -> | Plus |
X | 13286956..13287491 | 546..1083 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:13 Download gff for
BO12195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13180384..13180912 | 17..545 | 100 | -> | Plus |
arm_X | 13180989..13181524 | 546..1083 | 99 | | Plus |
BO12195.pep Sequence
Translation from 16 to 1099
> BO12195.pep
MSEDKMNGRSIRINRLPATIVAILLTFVLVYFLNFHQEERPAIYGMLRSE
NPSRVNLRKMLIAAIQAAQRGGLEVLDVARSRQLKERSKGKTDEGVNDPF
TDADGRSHCVMKQGLQRIFPRVQIFSEEDKEHCKQAHGYDLDPTVLHETA
QIPDVTVNAQDVTVWVDPLDATKEFTEELYEYVTTMVCVAVAGRPIIGVI
HSPFNGQTAWAWVGNSMSEYLSNLHPQHSPNNQAPIITVSRSHTAGAKDL
ARGIFGENVSLLTAAGAGYKVLQVVANNATAYLHTSKIKKWDICAGDAIL
HALGGTMTTLNDQLINYGPEESPVNTEGLLATLEQHDEYMDKLSKYREAH
NGKLAASFLDH
BO12195.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15743-PB | 355 | CG15743-PB | 1..355 | 1..355 | 1846 | 100 | Plus |
CG15743-PC | 355 | CG15743-PC | 1..355 | 1..355 | 1846 | 100 | Plus |
CG15743-PA | 355 | CG15743-PA | 1..355 | 1..355 | 1846 | 100 | Plus |
CG7789-PA | 306 | CG7789-PA | 8..295 | 57..343 | 360 | 33.1 | Plus |