Clone Sequence Records
BO12196.3prime Sequence
329 bp (328 high quality bases) assembled on 2006-04-20
> BO12196.3prime
ATGGTCTAGAAAGCTTGCGACATTGTAGCCTACAATGTGACGCTTGCCGA
TGCACTCGCCGATGTAGAACCAGAAGATGACCTCGGCGGTCACCAGGGTG
TTAAGCCAGGCCTCGCGAACCGTGAGGTTCTTGTAGGCGCCGGTCTTGGC
TCCCTTGATGATGTTGCCCAGTCCTTGGCGAATGGCCGGAATATCGGCGG
GCGTCGGGGGCGTCAGTTCCACCTTGGCGTACTTCAGGAACACGTCCAGT
TGGGGCCTCGCCTGTGTGAGGAGCCTGTTCACAAGTCCTGATCCCTTGGT
AGCCAAACTCGCCATGTCGACTGATAACT
BO12196.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6105-PA | 300 | l(2)06225-RA | 1..297 | 315..19 | 1485 | 100 | Minus |
| CG6105-PB | 300 | l(2)06225-RB | 1..297 | 315..19 | 1485 | 100 | Minus |
| CG6105-PC | 300 | l(2)06225-RC | 1..297 | 315..19 | 1485 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:33:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)06225-RD | 733 | CG6105-RD | 54..361 | 315..7 | 1490 | 99 | Minus |
| l(2)06225-RB | 477 | CG6105-RB | 54..361 | 315..7 | 1490 | 99 | Minus |
| l(2)06225-RA | 497 | CG6105-RA | 74..381 | 315..7 | 1490 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:33:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10975905..10976161 | 19..275 | 1285 | 100 | Plus |
| 2L | 23513712 | 2L | 10976250..10976290 | 275..315 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 12:33:14 has no hits.
BO12196.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:04 Download gff for
BO12196.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6105-PA | 1..300 | 15..315 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:01 Download gff for
BO12196.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6105-PC | 1..300 | 15..315 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 00:01:23 Download gff for
BO12196.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)06225-RA | 74..381 | 7..315 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:05:54 Download gff for
BO12196.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)06225-RA | 74..381 | 7..315 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:05:54 Download gff for
BO12196.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10975894..10976161 | 7..275 | 98 | <- | Plus |
| 2L | 10976251..10976290 | 276..315 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 00:01:23 Download gff for
BO12196.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10975894..10976161 | 7..275 | 98 | <- | Plus |
| arm_2L | 10976251..10976290 | 276..315 | 100 | | Plus |
BO12196.5prime Sequence
329 bp (328 high quality bases) assembled on 2006-04-20
> BO12196.5prime
GAAGTTATCAGTCGACATGGCGAGTTTGGCTACCAAGGGATCAGGACTTG
TGAACAGGCTCCTCACACAGGCGAGGCCCCAACTGGACGTGTTCCTGAAG
TACGCCAAGGTGGAACTGACGCCCCCGACGCCCGCCGATATTCCGGCCAT
TCGCCAAGGACTGGGCAACATCATCAAGGGAGCCAAGACCGGCGCCTACA
AGAACCTCACGGTTCGCGAGGCCTGGCTTAACACCCTGGTGACCGCCGAG
GTCATCTTCTGGTTCTACATCGGCGAGTGCATCGGCAAGCGTCACATTGT
AGGCTACAATGTCGCAAGCTTTCTAGACC
BO12196.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:39:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6105-PA | 300 | l(2)06225-RA | 1..297 | 17..313 | 1485 | 100 | Plus |
| CG6105-PB | 300 | l(2)06225-RB | 1..297 | 17..313 | 1485 | 100 | Plus |
| CG6105-PC | 300 | l(2)06225-RC | 1..297 | 17..313 | 1485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:14:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)06225-RD | 733 | CG6105-RD | 54..361 | 17..325 | 1490 | 99 | Plus |
| l(2)06225-RB | 477 | CG6105-RB | 54..361 | 17..325 | 1490 | 99 | Plus |
| l(2)06225-RA | 497 | CG6105-RA | 74..381 | 17..325 | 1490 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:14:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10975905..10976161 | 313..57 | 1285 | 100 | Minus |
| 2L | 23513712 | 2L | 10976250..10976290 | 57..17 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 14:14:12 has no hits.
BO12196.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:29:05 Download gff for
BO12196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6105-PA | 1..300 | 17..317 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:03 Download gff for
BO12196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6105-PC | 1..300 | 17..317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 03:03:22 Download gff for
BO12196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)06225-RA | 74..381 | 17..325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:02:20 Download gff for
BO12196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)06225-RA | 74..381 | 17..325 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:02:20 Download gff for
BO12196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10975894..10976161 | 57..325 | 98 | <- | Minus |
| 2L | 10976251..10976290 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:03:22 Download gff for
BO12196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10975894..10976161 | 57..325 | 98 | <- | Minus |
| arm_2L | 10976251..10976290 | 17..56 | 100 | | Minus |
BO12196.complete Sequence
331 bp assembled on 2006-10-11
GenBank Submission: FJ632354
> BO12196.complete
GAAGTTATCAGTCGACATGGCGAGTTTGGCTACCAAGGGATCAGGACTTG
TGAACAGGCTCCTCACACAGGCGAGGCCCCAACTGGACGTGTTCCTGAAG
TACGCCAAGGTGGAACTGACGCCCCCGACGCCCGCCGATATTCCGGCCAT
TCGCCAAGGACTGGGCAACATCATCAAGGGAGCCAAGACCGGCGCCTACA
AGAACCTCACGGTTCGCGAGGCCTGGCTTAACACCCTGGTGACCGCCGAG
GTCATCTTCTGGTTCTACATCGGCGAGTGCATCGGCAAGCGTCACATTGT
AGGCTACAATGTCGCAAGCTTTCTAGACCAT
BO12196.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:50:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)06225-RD | 300 | CG6105-PD | 1..297 | 17..313 | 1485 | 100 | Plus |
| l(2)06225-RB | 300 | CG6105-PB | 1..297 | 17..313 | 1485 | 100 | Plus |
| l(2)06225-RA | 300 | CG6105-PA | 1..297 | 17..313 | 1485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:50:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)06225-RD | 733 | CG6105-RD | 54..350 | 17..313 | 1485 | 100 | Plus |
| l(2)06225-RB | 477 | CG6105-RB | 54..350 | 17..313 | 1485 | 100 | Plus |
| l(2)06225-RA | 497 | CG6105-RA | 74..370 | 17..313 | 1485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:50:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10975905..10976161 | 313..57 | 1285 | 100 | Minus |
| 2L | 23513712 | 2L | 10976250..10976290 | 57..17 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:50:01 has no hits.
BO12196.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:19 Download gff for
BO12196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)06225-RC | 1..300 | 17..317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:22 Download gff for
BO12196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)06225-RC | 434..741 | 17..325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:18 Download gff for
BO12196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)06225-RA | 74..370 | 17..315 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:19 Download gff for
BO12196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)06225-RC | 434..741 | 17..325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:05 Download gff for
BO12196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)06225-RA | 74..370 | 17..315 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:05 Download gff for
BO12196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10976251..10976290 | 17..56 | 100 | | Minus |
| 2L | 10975903..10976161 | 57..315 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:18 Download gff for
BO12196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10975903..10976161 | 57..315 | 99 | <- | Minus |
| arm_2L | 10976251..10976290 | 17..56 | 100 | | Minus |
BO12196.pep Sequence
Translation from 16 to 331
> BO12196.pep
MASLATKGSGLVNRLLTQARPQLDVFLKYAKVELTPPTPADIPAIRQGLG
NIIKGAKTGAYKNLTVREAWLNTLVTAEVIFWFYIGECIGKRHIVGYNVA
SFLDH
BO12196.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)06225-PD | 99 | CG6105-PD | 1..99 | 1..99 | 512 | 100 | Plus |
| l(2)06225-PB | 99 | CG6105-PB | 1..99 | 1..99 | 512 | 100 | Plus |
| l(2)06225-PA | 99 | CG6105-PA | 1..99 | 1..99 | 512 | 100 | Plus |
| CG7211-PA | 107 | CG7211-PA | 1..107 | 1..99 | 261 | 51.4 | Plus |
